Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_15155

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntccmA and OKGIIK_15150 overlap by 4 nucleotidesOKGIIK_15150 and OKGIIK_15155 are separated by 21 nucleotidesOKGIIK_15155 and splB are separated by 39 nucleotides OKGIIK_15145: ccmA - ABC transporter ATP-binding protein, at 3,292,932 to 3,293,825 ccmA OKGIIK_15150: OKGIIK_15150 - hypothetical protein, at 3,293,822 to 3,294,796 _15150 OKGIIK_15155: OKGIIK_15155 - hypothetical protein, at 3,294,818 to 3,295,297 _15155 OKGIIK_15160: splB - DNA repair photolyase, at 3,295,337 to 3,296,455 splB Position (kb) 3294 3295 3296Strain fitness (log2 ratio) -2 -1 0 1 2at 3293.847 kb on + strandat 3293.847 kb on + strandat 3293.848 kb on - strandat 3293.848 kb on - strandat 3293.848 kb on - strandat 3293.848 kb on - strandat 3293.848 kb on - strandat 3293.855 kb on + strandat 3293.889 kb on + strandat 3293.889 kb on + strandat 3293.889 kb on + strandat 3293.889 kb on + strandat 3293.889 kb on + strandat 3293.889 kb on + strandat 3293.889 kb on + strandat 3293.889 kb on + strandat 3293.889 kb on + strandat 3293.890 kb on - strandat 3293.890 kb on - strandat 3293.890 kb on - strandat 3293.890 kb on - strandat 3293.890 kb on - strandat 3293.890 kb on - strandat 3293.890 kb on - strandat 3293.890 kb on - strandat 3293.890 kb on - strandat 3293.890 kb on - strandat 3293.890 kb on - strandat 3293.978 kb on + strand, within OKGIIK_15150at 3293.978 kb on + strand, within OKGIIK_15150at 3293.978 kb on + strand, within OKGIIK_15150at 3293.978 kb on + strand, within OKGIIK_15150at 3293.979 kb on - strand, within OKGIIK_15150at 3293.979 kb on - strand, within OKGIIK_15150at 3293.979 kb on - strand, within OKGIIK_15150at 3293.979 kb on - strand, within OKGIIK_15150at 3293.979 kb on - strand, within OKGIIK_15150at 3293.979 kb on - strand, within OKGIIK_15150at 3293.979 kb on - strand, within OKGIIK_15150at 3293.979 kb on - strand, within OKGIIK_15150at 3293.979 kb on - strand, within OKGIIK_15150at 3294.101 kb on + strand, within OKGIIK_15150at 3294.102 kb on - strand, within OKGIIK_15150at 3294.227 kb on + strand, within OKGIIK_15150at 3294.228 kb on - strand, within OKGIIK_15150at 3294.228 kb on - strand, within OKGIIK_15150at 3294.587 kb on + strand, within OKGIIK_15150at 3294.588 kb on - strand, within OKGIIK_15150at 3294.588 kb on - strand, within OKGIIK_15150at 3294.657 kb on + strand, within OKGIIK_15150at 3294.657 kb on + strand, within OKGIIK_15150at 3294.657 kb on + strand, within OKGIIK_15150at 3294.658 kb on - strand, within OKGIIK_15150at 3294.658 kb on - strand, within OKGIIK_15150at 3294.658 kb on - strand, within OKGIIK_15150at 3294.658 kb on - strand, within OKGIIK_15150at 3294.658 kb on - strand, within OKGIIK_15150at 3294.658 kb on - strand, within OKGIIK_15150at 3294.680 kb on + strand, within OKGIIK_15150at 3294.680 kb on + strand, within OKGIIK_15150at 3294.681 kb on - strand, within OKGIIK_15150at 3294.681 kb on - strand, within OKGIIK_15150at 3294.706 kb on + strandat 3294.706 kb on + strandat 3294.706 kb on + strandat 3294.706 kb on + strandat 3294.706 kb on + strandat 3294.706 kb on + strandat 3294.706 kb on + strandat 3294.706 kb on + strandat 3294.706 kb on + strandat 3294.707 kb on - strandat 3294.707 kb on - strandat 3294.714 kb on + strandat 3294.714 kb on + strandat 3294.714 kb on + strandat 3294.714 kb on + strandat 3294.714 kb on + strandat 3294.714 kb on + strandat 3294.714 kb on + strandat 3294.714 kb on + strandat 3294.714 kb on + strandat 3294.715 kb on - strandat 3294.715 kb on - strandat 3294.715 kb on - strandat 3294.715 kb on - strandat 3294.715 kb on - strandat 3294.715 kb on - strandat 3294.715 kb on - strandat 3294.715 kb on - strandat 3294.715 kb on - strandat 3294.715 kb on - strandat 3294.715 kb on - strandat 3294.724 kb on + strandat 3294.933 kb on + strand, within OKGIIK_15155at 3294.934 kb on - strand, within OKGIIK_15155at 3294.934 kb on - strand, within OKGIIK_15155at 3294.996 kb on + strand, within OKGIIK_15155at 3294.996 kb on + strand, within OKGIIK_15155at 3294.996 kb on + strand, within OKGIIK_15155at 3294.996 kb on + strand, within OKGIIK_15155at 3294.996 kb on + strand, within OKGIIK_15155at 3294.996 kb on + strand, within OKGIIK_15155at 3294.997 kb on - strand, within OKGIIK_15155at 3294.997 kb on - strand, within OKGIIK_15155at 3294.997 kb on - strand, within OKGIIK_15155at 3295.126 kb on + strand, within OKGIIK_15155at 3295.126 kb on + strand, within OKGIIK_15155at 3295.126 kb on + strand, within OKGIIK_15155at 3295.126 kb on + strand, within OKGIIK_15155at 3295.126 kb on + strand, within OKGIIK_15155at 3295.126 kb on + strand, within OKGIIK_15155at 3295.126 kb on + strand, within OKGIIK_15155at 3295.126 kb on + strand, within OKGIIK_15155at 3295.126 kb on + strand, within OKGIIK_15155at 3295.127 kb on - strand, within OKGIIK_15155at 3295.127 kb on - strand, within OKGIIK_15155at 3295.127 kb on - strand, within OKGIIK_15155at 3295.127 kb on - strand, within OKGIIK_15155at 3295.127 kb on - strand, within OKGIIK_15155at 3295.127 kb on - strand, within OKGIIK_15155at 3295.127 kb on - strand, within OKGIIK_15155at 3295.127 kb on - strand, within OKGIIK_15155at 3295.127 kb on - strand, within OKGIIK_15155at 3295.127 kb on - strand, within OKGIIK_15155at 3295.512 kb on + strand, within splBat 3295.512 kb on + strand, within splBat 3295.636 kb on - strand, within splBat 3295.636 kb on - strand, within splBat 3295.636 kb on - strand, within splBat 3295.676 kb on + strand, within splBat 3296.004 kb on + strand, within splBat 3296.005 kb on - strand, within splBat 3296.026 kb on + strand, within splBat 3296.026 kb on + strand, within splBat 3296.142 kb on + strand, within splBat 3296.142 kb on + strand, within splBat 3296.142 kb on + strand, within splBat 3296.142 kb on + strand, within splBat 3296.142 kb on + strand, within splBat 3296.142 kb on + strand, within splBat 3296.142 kb on + strand, within splBat 3296.142 kb on + strand, within splBat 3296.142 kb on + strand, within splBat 3296.143 kb on - strand, within splBat 3296.143 kb on - strand, within splBat 3296.143 kb on - strand, within splBat 3296.143 kb on - strand, within splBat 3296.143 kb on - strand, within splBat 3296.169 kb on + strand, within splBat 3296.170 kb on - strand, within splBat 3296.170 kb on - strand, within splBat 3296.170 kb on - strand, within splBat 3296.170 kb on - strand, within splBat 3296.170 kb on - strand, within splBat 3296.170 kb on - strand, within splBat 3296.170 kb on - strand, within splBat 3296.170 kb on - strand, within splB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
3,293,847 + +0.2
3,293,847 + -1.3
3,293,848 - -0.2
3,293,848 - -0.3
3,293,848 - -2.4
3,293,848 - +0.2
3,293,848 - +1.7
3,293,855 + +0.7
3,293,889 + -0.3
3,293,889 + -0.8
3,293,889 + +1.2
3,293,889 + -1.7
3,293,889 + -0.4
3,293,889 + +0.2
3,293,889 + -0.2
3,293,889 + +0.8
3,293,889 + -0.2
3,293,890 - +0.8
3,293,890 - -0.5
3,293,890 - +0.1
3,293,890 - -0.5
3,293,890 - -1.5
3,293,890 - -1.0
3,293,890 - -1.1
3,293,890 - -0.2
3,293,890 - +1.0
3,293,890 - +1.2
3,293,890 - +0.2
3,293,978 + OKGIIK_15150 0.16 +1.7
3,293,978 + OKGIIK_15150 0.16 -0.1
3,293,978 + OKGIIK_15150 0.16 +1.4
3,293,978 + OKGIIK_15150 0.16 +0.2
3,293,979 - OKGIIK_15150 0.16 -0.6
3,293,979 - OKGIIK_15150 0.16 +0.9
3,293,979 - OKGIIK_15150 0.16 +0.4
3,293,979 - OKGIIK_15150 0.16 -1.3
3,293,979 - OKGIIK_15150 0.16 -1.8
3,293,979 - OKGIIK_15150 0.16 +0.2
3,293,979 - OKGIIK_15150 0.16 -0.1
3,293,979 - OKGIIK_15150 0.16 +0.3
3,293,979 - OKGIIK_15150 0.16 -0.2
3,294,101 + OKGIIK_15150 0.29 -0.1
3,294,102 - OKGIIK_15150 0.29 -0.3
3,294,227 + OKGIIK_15150 0.42 +0.8
3,294,228 - OKGIIK_15150 0.42 +0.3
3,294,228 - OKGIIK_15150 0.42 +0.2
3,294,587 + OKGIIK_15150 0.78 +0.3
3,294,588 - OKGIIK_15150 0.79 +0.5
3,294,588 - OKGIIK_15150 0.79 -0.1
3,294,657 + OKGIIK_15150 0.86 +0.8
3,294,657 + OKGIIK_15150 0.86 -0.0
3,294,657 + OKGIIK_15150 0.86 -1.8
3,294,658 - OKGIIK_15150 0.86 +0.1
3,294,658 - OKGIIK_15150 0.86 -1.1
3,294,658 - OKGIIK_15150 0.86 -0.7
3,294,658 - OKGIIK_15150 0.86 -0.8
3,294,658 - OKGIIK_15150 0.86 -0.3
3,294,658 - OKGIIK_15150 0.86 -1.2
3,294,680 + OKGIIK_15150 0.88 -2.1
3,294,680 + OKGIIK_15150 0.88 -0.3
3,294,681 - OKGIIK_15150 0.88 +0.3
3,294,681 - OKGIIK_15150 0.88 -1.5
3,294,706 + -0.1
3,294,706 + -0.6
3,294,706 + +0.0
3,294,706 + -0.9
3,294,706 + -1.6
3,294,706 + +0.4
3,294,706 + +1.2
3,294,706 + +0.1
3,294,706 + +1.2
3,294,707 - -0.8
3,294,707 - -0.4
3,294,714 + -0.8
3,294,714 + +0.0
3,294,714 + +1.2
3,294,714 + -0.0
3,294,714 + -1.1
3,294,714 + +0.8
3,294,714 + +0.2
3,294,714 + -0.4
3,294,714 + +0.7
3,294,715 - +0.5
3,294,715 - +0.3
3,294,715 - -1.6
3,294,715 - +1.2
3,294,715 - -0.2
3,294,715 - +0.3
3,294,715 - -0.8
3,294,715 - +1.2
3,294,715 - +0.1
3,294,715 - +0.5
3,294,715 - -0.8
3,294,724 + -2.0
3,294,933 + OKGIIK_15155 0.24 +1.0
3,294,934 - OKGIIK_15155 0.24 -1.8
3,294,934 - OKGIIK_15155 0.24 -0.0
3,294,996 + OKGIIK_15155 0.37 -0.1
3,294,996 + OKGIIK_15155 0.37 -1.1
3,294,996 + OKGIIK_15155 0.37 +0.9
3,294,996 + OKGIIK_15155 0.37 -1.4
3,294,996 + OKGIIK_15155 0.37 +2.7
3,294,996 + OKGIIK_15155 0.37 -1.4
3,294,997 - OKGIIK_15155 0.37 -0.4
3,294,997 - OKGIIK_15155 0.37 -1.6
3,294,997 - OKGIIK_15155 0.37 +0.4
3,295,126 + OKGIIK_15155 0.64 +0.2
3,295,126 + OKGIIK_15155 0.64 -0.1
3,295,126 + OKGIIK_15155 0.64 -1.4
3,295,126 + OKGIIK_15155 0.64 -1.4
3,295,126 + OKGIIK_15155 0.64 -1.1
3,295,126 + OKGIIK_15155 0.64 +2.0
3,295,126 + OKGIIK_15155 0.64 -0.4
3,295,126 + OKGIIK_15155 0.64 -0.3
3,295,126 + OKGIIK_15155 0.64 -2.0
3,295,127 - OKGIIK_15155 0.64 -1.1
3,295,127 - OKGIIK_15155 0.64 -0.4
3,295,127 - OKGIIK_15155 0.64 -1.3
3,295,127 - OKGIIK_15155 0.64 +0.4
3,295,127 - OKGIIK_15155 0.64 +1.2
3,295,127 - OKGIIK_15155 0.64 -0.4
3,295,127 - OKGIIK_15155 0.64 -1.6
3,295,127 - OKGIIK_15155 0.64 -0.8
3,295,127 - OKGIIK_15155 0.64 -0.5
3,295,127 - OKGIIK_15155 0.64 -0.6
3,295,512 + splB OKGIIK_15160 0.16 +1.2
3,295,512 + splB OKGIIK_15160 0.16 +0.7
3,295,636 - splB OKGIIK_15160 0.27 -0.8
3,295,636 - splB OKGIIK_15160 0.27 -1.2
3,295,636 - splB OKGIIK_15160 0.27 +0.1
3,295,676 + splB OKGIIK_15160 0.30 -2.0
3,296,004 + splB OKGIIK_15160 0.60 -0.8
3,296,005 - splB OKGIIK_15160 0.60 -0.8
3,296,026 + splB OKGIIK_15160 0.62 -1.4
3,296,026 + splB OKGIIK_15160 0.62 -1.4
3,296,142 + splB OKGIIK_15160 0.72 +1.0
3,296,142 + splB OKGIIK_15160 0.72 +0.7
3,296,142 + splB OKGIIK_15160 0.72 +0.2
3,296,142 + splB OKGIIK_15160 0.72 -0.3
3,296,142 + splB OKGIIK_15160 0.72 +1.0
3,296,142 + splB OKGIIK_15160 0.72 -0.3
3,296,142 + splB OKGIIK_15160 0.72 +0.5
3,296,142 + splB OKGIIK_15160 0.72 -2.4
3,296,142 + splB OKGIIK_15160 0.72 +0.0
3,296,143 - splB OKGIIK_15160 0.72 -0.3
3,296,143 - splB OKGIIK_15160 0.72 +0.8
3,296,143 - splB OKGIIK_15160 0.72 +1.6
3,296,143 - splB OKGIIK_15160 0.72 +0.7
3,296,143 - splB OKGIIK_15160 0.72 -0.2
3,296,169 + splB OKGIIK_15160 0.74 +0.9
3,296,170 - splB OKGIIK_15160 0.74 +0.7
3,296,170 - splB OKGIIK_15160 0.74 -0.9
3,296,170 - splB OKGIIK_15160 0.74 -0.5
3,296,170 - splB OKGIIK_15160 0.74 -1.1
3,296,170 - splB OKGIIK_15160 0.74 -0.9
3,296,170 - splB OKGIIK_15160 0.74 -1.1
3,296,170 - splB OKGIIK_15160 0.74 +1.2
3,296,170 - splB OKGIIK_15160 0.74 +0.1

Or see this region's nucleotide sequence