Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_12920

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_12915 and ctpA are separated by 119 nucleotidesctpA and rpoH are separated by 85 nucleotides OKGIIK_12915: OKGIIK_12915 - Peptidase M23, at 2,786,775 to 2,787,995 _12915 OKGIIK_12920: ctpA - C-terminal processing protease CtpA/Prc, contains a PDZ domain, at 2,788,115 to 2,789,509 ctpA OKGIIK_12925: rpoH - RNA polymerase sigma factor RpoH, at 2,789,595 to 2,790,458 rpoH Position (kb) 2788 2789 2790Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2787.168 kb on + strand, within OKGIIK_12915at 2787.168 kb on + strand, within OKGIIK_12915at 2787.168 kb on + strand, within OKGIIK_12915at 2787.169 kb on - strand, within OKGIIK_12915at 2787.169 kb on - strand, within OKGIIK_12915at 2787.169 kb on - strand, within OKGIIK_12915at 2787.169 kb on - strand, within OKGIIK_12915at 2787.169 kb on - strand, within OKGIIK_12915at 2787.169 kb on - strand, within OKGIIK_12915at 2787.246 kb on + strand, within OKGIIK_12915at 2787.246 kb on + strand, within OKGIIK_12915at 2787.247 kb on - strand, within OKGIIK_12915at 2787.247 kb on - strand, within OKGIIK_12915at 2787.255 kb on + strand, within OKGIIK_12915at 2787.255 kb on + strand, within OKGIIK_12915at 2787.255 kb on + strand, within OKGIIK_12915at 2787.255 kb on + strand, within OKGIIK_12915at 2787.255 kb on + strand, within OKGIIK_12915at 2787.256 kb on - strand, within OKGIIK_12915at 2787.256 kb on - strand, within OKGIIK_12915at 2787.256 kb on - strand, within OKGIIK_12915at 2787.641 kb on + strand, within OKGIIK_12915at 2787.687 kb on + strand, within OKGIIK_12915at 2787.687 kb on + strand, within OKGIIK_12915at 2787.687 kb on + strand, within OKGIIK_12915at 2787.687 kb on + strand, within OKGIIK_12915at 2787.688 kb on - strand, within OKGIIK_12915at 2787.688 kb on - strand, within OKGIIK_12915at 2787.688 kb on - strand, within OKGIIK_12915at 2787.688 kb on - strand, within OKGIIK_12915at 2787.759 kb on + strand, within OKGIIK_12915at 2787.759 kb on + strand, within OKGIIK_12915at 2787.759 kb on + strand, within OKGIIK_12915at 2787.759 kb on + strand, within OKGIIK_12915at 2787.759 kb on + strand, within OKGIIK_12915at 2787.760 kb on - strand, within OKGIIK_12915at 2787.760 kb on - strand, within OKGIIK_12915at 2787.760 kb on - strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.828 kb on + strand, within OKGIIK_12915at 2787.829 kb on - strand, within OKGIIK_12915at 2787.829 kb on - strand, within OKGIIK_12915at 2787.829 kb on - strand, within OKGIIK_12915at 2787.829 kb on - strand, within OKGIIK_12915at 2787.829 kb on - strand, within OKGIIK_12915at 2787.829 kb on - strand, within OKGIIK_12915at 2787.829 kb on - strand, within OKGIIK_12915at 2787.829 kb on - strand, within OKGIIK_12915at 2787.829 kb on - strand, within OKGIIK_12915at 2787.829 kb on - strand, within OKGIIK_12915at 2787.829 kb on - strand, within OKGIIK_12915at 2787.829 kb on - strand, within OKGIIK_12915at 2787.930 kb on + strandat 2787.930 kb on + strandat 2787.930 kb on + strandat 2787.930 kb on + strandat 2787.930 kb on + strandat 2787.930 kb on + strandat 2787.930 kb on + strandat 2787.931 kb on - strandat 2787.931 kb on - strandat 2787.931 kb on - strandat 2787.931 kb on - strandat 2787.931 kb on - strandat 2788.031 kb on + strandat 2788.031 kb on + strandat 2788.032 kb on - strandat 2788.032 kb on - strandat 2788.032 kb on - strandat 2788.032 kb on - strandat 2788.032 kb on - strandat 2788.032 kb on - strandat 2788.334 kb on + strand, within ctpAat 2788.334 kb on + strand, within ctpAat 2788.355 kb on + strand, within ctpAat 2788.355 kb on + strand, within ctpAat 2788.355 kb on + strand, within ctpAat 2788.355 kb on + strand, within ctpAat 2788.355 kb on + strand, within ctpAat 2788.355 kb on + strand, within ctpAat 2788.355 kb on + strand, within ctpAat 2788.355 kb on + strand, within ctpAat 2788.355 kb on + strand, within ctpAat 2788.356 kb on - strand, within ctpAat 2788.356 kb on - strand, within ctpAat 2788.356 kb on - strand, within ctpAat 2788.356 kb on - strand, within ctpAat 2788.436 kb on + strand, within ctpAat 2788.436 kb on + strand, within ctpAat 2788.436 kb on + strand, within ctpAat 2788.436 kb on + strand, within ctpAat 2788.436 kb on + strand, within ctpAat 2788.437 kb on - strand, within ctpAat 2788.437 kb on - strand, within ctpAat 2788.437 kb on - strand, within ctpAat 2788.437 kb on - strand, within ctpAat 2788.487 kb on + strand, within ctpAat 2788.487 kb on + strand, within ctpAat 2788.487 kb on + strand, within ctpAat 2788.487 kb on + strand, within ctpAat 2788.487 kb on + strand, within ctpAat 2788.487 kb on + strand, within ctpAat 2788.787 kb on + strand, within ctpAat 2788.787 kb on + strand, within ctpAat 2788.787 kb on + strand, within ctpAat 2788.787 kb on + strand, within ctpAat 2788.787 kb on + strand, within ctpAat 2788.787 kb on + strand, within ctpAat 2788.787 kb on + strand, within ctpAat 2788.788 kb on - strand, within ctpAat 2788.788 kb on - strand, within ctpAat 2788.788 kb on - strand, within ctpAat 2788.788 kb on - strand, within ctpAat 2788.788 kb on - strand, within ctpAat 2788.788 kb on - strand, within ctpAat 2788.793 kb on + strand, within ctpAat 2788.793 kb on + strand, within ctpAat 2788.793 kb on + strand, within ctpAat 2788.793 kb on + strand, within ctpAat 2788.793 kb on + strand, within ctpAat 2788.793 kb on + strand, within ctpAat 2788.794 kb on - strand, within ctpAat 2788.794 kb on - strand, within ctpAat 2788.794 kb on - strand, within ctpAat 2788.794 kb on - strand, within ctpAat 2788.794 kb on - strand, within ctpAat 2789.203 kb on - strand, within ctpAat 2789.222 kb on + strand, within ctpAat 2789.222 kb on + strand, within ctpAat 2789.223 kb on - strand, within ctpAat 2789.223 kb on - strand, within ctpAat 2789.223 kb on - strand, within ctpAat 2789.223 kb on - strand, within ctpAat 2789.223 kb on - strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.225 kb on + strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.226 kb on - strand, within ctpAat 2789.435 kb on + strandat 2789.436 kb on - strandat 2789.436 kb on - strandat 2789.436 kb on - strandat 2789.590 kb on + strandat 2789.590 kb on + strandat 2789.590 kb on + strandat 2789.590 kb on + strandat 2790.477 kb on - strandat 2790.477 kb on - strandat 2790.477 kb on - strandat 2790.477 kb on - strandat 2790.477 kb on - strandat 2790.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,787,168 + OKGIIK_12915 0.32 -0.3
2,787,168 + OKGIIK_12915 0.32 +0.5
2,787,168 + OKGIIK_12915 0.32 -1.3
2,787,169 - OKGIIK_12915 0.32 +0.5
2,787,169 - OKGIIK_12915 0.32 +0.4
2,787,169 - OKGIIK_12915 0.32 +0.2
2,787,169 - OKGIIK_12915 0.32 +0.5
2,787,169 - OKGIIK_12915 0.32 -1.0
2,787,169 - OKGIIK_12915 0.32 +0.9
2,787,246 + OKGIIK_12915 0.39 -0.1
2,787,246 + OKGIIK_12915 0.39 -1.0
2,787,247 - OKGIIK_12915 0.39 -0.6
2,787,247 - OKGIIK_12915 0.39 -0.1
2,787,255 + OKGIIK_12915 0.39 +0.4
2,787,255 + OKGIIK_12915 0.39 +0.1
2,787,255 + OKGIIK_12915 0.39 +1.7
2,787,255 + OKGIIK_12915 0.39 -1.5
2,787,255 + OKGIIK_12915 0.39 +1.4
2,787,256 - OKGIIK_12915 0.39 -0.5
2,787,256 - OKGIIK_12915 0.39 -0.9
2,787,256 - OKGIIK_12915 0.39 -1.3
2,787,641 + OKGIIK_12915 0.71 -0.2
2,787,687 + OKGIIK_12915 0.75 +0.5
2,787,687 + OKGIIK_12915 0.75 -0.4
2,787,687 + OKGIIK_12915 0.75 -0.8
2,787,687 + OKGIIK_12915 0.75 +0.0
2,787,688 - OKGIIK_12915 0.75 +0.9
2,787,688 - OKGIIK_12915 0.75 +0.0
2,787,688 - OKGIIK_12915 0.75 +0.4
2,787,688 - OKGIIK_12915 0.75 +1.2
2,787,759 + OKGIIK_12915 0.81 -0.4
2,787,759 + OKGIIK_12915 0.81 -0.6
2,787,759 + OKGIIK_12915 0.81 -1.1
2,787,759 + OKGIIK_12915 0.81 -0.8
2,787,759 + OKGIIK_12915 0.81 +1.2
2,787,760 - OKGIIK_12915 0.81 +0.4
2,787,760 - OKGIIK_12915 0.81 +0.4
2,787,760 - OKGIIK_12915 0.81 +0.1
2,787,828 + OKGIIK_12915 0.86 +0.4
2,787,828 + OKGIIK_12915 0.86 -1.0
2,787,828 + OKGIIK_12915 0.86 -1.8
2,787,828 + OKGIIK_12915 0.86 +0.0
2,787,828 + OKGIIK_12915 0.86 -1.0
2,787,828 + OKGIIK_12915 0.86 -2.1
2,787,828 + OKGIIK_12915 0.86 -0.6
2,787,828 + OKGIIK_12915 0.86 +1.8
2,787,828 + OKGIIK_12915 0.86 -0.2
2,787,828 + OKGIIK_12915 0.86 +0.5
2,787,828 + OKGIIK_12915 0.86 +0.7
2,787,828 + OKGIIK_12915 0.86 +0.0
2,787,828 + OKGIIK_12915 0.86 +0.1
2,787,828 + OKGIIK_12915 0.86 +0.8
2,787,829 - OKGIIK_12915 0.86 -0.5
2,787,829 - OKGIIK_12915 0.86 -0.4
2,787,829 - OKGIIK_12915 0.86 +0.4
2,787,829 - OKGIIK_12915 0.86 -2.2
2,787,829 - OKGIIK_12915 0.86 +0.5
2,787,829 - OKGIIK_12915 0.86 +0.2
2,787,829 - OKGIIK_12915 0.86 -1.2
2,787,829 - OKGIIK_12915 0.86 -0.1
2,787,829 - OKGIIK_12915 0.86 -0.6
2,787,829 - OKGIIK_12915 0.86 -1.2
2,787,829 - OKGIIK_12915 0.86 -1.0
2,787,829 - OKGIIK_12915 0.86 -0.3
2,787,930 + +0.9
2,787,930 + -0.7
2,787,930 + +0.4
2,787,930 + -0.2
2,787,930 + -1.2
2,787,930 + +0.0
2,787,930 + -1.2
2,787,931 - +0.7
2,787,931 - -1.2
2,787,931 - +0.5
2,787,931 - +0.8
2,787,931 - -0.6
2,788,031 + -0.2
2,788,031 + -0.2
2,788,032 - +0.6
2,788,032 - -0.0
2,788,032 - +0.4
2,788,032 - -0.8
2,788,032 - -1.2
2,788,032 - +0.2
2,788,334 + ctpA OKGIIK_12920 0.16 +0.0
2,788,334 + ctpA OKGIIK_12920 0.16 -0.6
2,788,355 + ctpA OKGIIK_12920 0.17 -1.0
2,788,355 + ctpA OKGIIK_12920 0.17 +2.2
2,788,355 + ctpA OKGIIK_12920 0.17 -1.6
2,788,355 + ctpA OKGIIK_12920 0.17 -0.1
2,788,355 + ctpA OKGIIK_12920 0.17 -0.7
2,788,355 + ctpA OKGIIK_12920 0.17 -1.2
2,788,355 + ctpA OKGIIK_12920 0.17 -0.5
2,788,355 + ctpA OKGIIK_12920 0.17 -0.4
2,788,355 + ctpA OKGIIK_12920 0.17 -1.1
2,788,356 - ctpA OKGIIK_12920 0.17 -0.6
2,788,356 - ctpA OKGIIK_12920 0.17 -0.5
2,788,356 - ctpA OKGIIK_12920 0.17 -1.2
2,788,356 - ctpA OKGIIK_12920 0.17 -1.0
2,788,436 + ctpA OKGIIK_12920 0.23 -0.8
2,788,436 + ctpA OKGIIK_12920 0.23 -2.1
2,788,436 + ctpA OKGIIK_12920 0.23 +0.1
2,788,436 + ctpA OKGIIK_12920 0.23 -0.7
2,788,436 + ctpA OKGIIK_12920 0.23 -1.5
2,788,437 - ctpA OKGIIK_12920 0.23 -1.3
2,788,437 - ctpA OKGIIK_12920 0.23 -0.5
2,788,437 - ctpA OKGIIK_12920 0.23 +1.1
2,788,437 - ctpA OKGIIK_12920 0.23 -0.4
2,788,487 + ctpA OKGIIK_12920 0.27 -0.8
2,788,487 + ctpA OKGIIK_12920 0.27 -1.5
2,788,487 + ctpA OKGIIK_12920 0.27 +0.4
2,788,487 + ctpA OKGIIK_12920 0.27 -1.8
2,788,487 + ctpA OKGIIK_12920 0.27 -0.6
2,788,487 + ctpA OKGIIK_12920 0.27 -1.0
2,788,787 + ctpA OKGIIK_12920 0.48 +0.4
2,788,787 + ctpA OKGIIK_12920 0.48 +0.4
2,788,787 + ctpA OKGIIK_12920 0.48 +0.4
2,788,787 + ctpA OKGIIK_12920 0.48 -1.0
2,788,787 + ctpA OKGIIK_12920 0.48 +1.0
2,788,787 + ctpA OKGIIK_12920 0.48 -1.2
2,788,787 + ctpA OKGIIK_12920 0.48 -2.5
2,788,788 - ctpA OKGIIK_12920 0.48 +0.0
2,788,788 - ctpA OKGIIK_12920 0.48 -0.6
2,788,788 - ctpA OKGIIK_12920 0.48 -0.6
2,788,788 - ctpA OKGIIK_12920 0.48 -1.5
2,788,788 - ctpA OKGIIK_12920 0.48 -1.2
2,788,788 - ctpA OKGIIK_12920 0.48 -1.2
2,788,793 + ctpA OKGIIK_12920 0.49 -1.3
2,788,793 + ctpA OKGIIK_12920 0.49 -2.0
2,788,793 + ctpA OKGIIK_12920 0.49 -0.8
2,788,793 + ctpA OKGIIK_12920 0.49 +0.2
2,788,793 + ctpA OKGIIK_12920 0.49 -0.2
2,788,793 + ctpA OKGIIK_12920 0.49 -0.2
2,788,794 - ctpA OKGIIK_12920 0.49 -1.6
2,788,794 - ctpA OKGIIK_12920 0.49 -1.5
2,788,794 - ctpA OKGIIK_12920 0.49 -2.1
2,788,794 - ctpA OKGIIK_12920 0.49 -0.8
2,788,794 - ctpA OKGIIK_12920 0.49 -1.6
2,789,203 - ctpA OKGIIK_12920 0.78 +1.4
2,789,222 + ctpA OKGIIK_12920 0.79 +0.4
2,789,222 + ctpA OKGIIK_12920 0.79 -2.2
2,789,223 - ctpA OKGIIK_12920 0.79 -2.7
2,789,223 - ctpA OKGIIK_12920 0.79 +0.4
2,789,223 - ctpA OKGIIK_12920 0.79 -1.8
2,789,223 - ctpA OKGIIK_12920 0.79 -1.5
2,789,223 - ctpA OKGIIK_12920 0.79 +0.4
2,789,225 + ctpA OKGIIK_12920 0.80 -1.0
2,789,225 + ctpA OKGIIK_12920 0.80 +0.8
2,789,225 + ctpA OKGIIK_12920 0.80 -0.3
2,789,225 + ctpA OKGIIK_12920 0.80 +1.0
2,789,225 + ctpA OKGIIK_12920 0.80 +0.1
2,789,225 + ctpA OKGIIK_12920 0.80 +0.2
2,789,225 + ctpA OKGIIK_12920 0.80 -1.0
2,789,225 + ctpA OKGIIK_12920 0.80 +0.4
2,789,225 + ctpA OKGIIK_12920 0.80 -1.1
2,789,225 + ctpA OKGIIK_12920 0.80 -1.0
2,789,225 + ctpA OKGIIK_12920 0.80 -0.6
2,789,225 + ctpA OKGIIK_12920 0.80 -2.9
2,789,225 + ctpA OKGIIK_12920 0.80 -1.5
2,789,225 + ctpA OKGIIK_12920 0.80 -0.1
2,789,225 + ctpA OKGIIK_12920 0.80 -0.6
2,789,226 - ctpA OKGIIK_12920 0.80 -0.6
2,789,226 - ctpA OKGIIK_12920 0.80 -0.6
2,789,226 - ctpA OKGIIK_12920 0.80 -0.6
2,789,226 - ctpA OKGIIK_12920 0.80 -1.6
2,789,226 - ctpA OKGIIK_12920 0.80 +0.0
2,789,226 - ctpA OKGIIK_12920 0.80 -0.6
2,789,226 - ctpA OKGIIK_12920 0.80 +0.4
2,789,226 - ctpA OKGIIK_12920 0.80 +1.0
2,789,226 - ctpA OKGIIK_12920 0.80 -1.7
2,789,226 - ctpA OKGIIK_12920 0.80 +1.8
2,789,226 - ctpA OKGIIK_12920 0.80 -0.9
2,789,226 - ctpA OKGIIK_12920 0.80 -3.2
2,789,226 - ctpA OKGIIK_12920 0.80 -0.8
2,789,226 - ctpA OKGIIK_12920 0.80 +0.8
2,789,226 - ctpA OKGIIK_12920 0.80 +0.7
2,789,226 - ctpA OKGIIK_12920 0.80 +0.9
2,789,435 + -2.7
2,789,436 - -0.2
2,789,436 - -1.8
2,789,436 - -0.6
2,789,590 + -0.5
2,789,590 + -0.4
2,789,590 + -0.2
2,789,590 + -1.0
2,790,477 - +0.3
2,790,477 - +0.5
2,790,477 - +0.1
2,790,477 - +0.1
2,790,477 - -1.6
2,790,489 + -0.8

Or see this region's nucleotide sequence