Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_06280

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcusA and OKGIIK_06275 overlap by 4 nucleotidesOKGIIK_06275 and OKGIIK_06280 are separated by 133 nucleotidesOKGIIK_06280 and OKGIIK_06285 overlap by 1 nucleotides OKGIIK_06270: cusA - CusA/CzcA family heavy metal efflux RND transporter, at 1,377,372 to 1,380,506 cusA OKGIIK_06275: OKGIIK_06275 - Transcriptional regulator, at 1,380,503 to 1,380,832 _06275 OKGIIK_06280: OKGIIK_06280 - Cobalt-zinc-cadmium resistance protein CzcD, at 1,380,966 to 1,381,586 _06280 OKGIIK_06285: OKGIIK_06285 - Cation diffusion facilitator family transporter, at 1,381,586 to 1,382,491 _06285 Position (kb) 1380 1381 1382Strain fitness (log2 ratio) -2 -1 0 1 2at 1380.042 kb on + strand, within cusAat 1380.042 kb on + strand, within cusAat 1380.043 kb on - strand, within cusAat 1380.061 kb on + strand, within cusAat 1380.105 kb on - strand, within cusAat 1380.141 kb on + strand, within cusAat 1380.141 kb on + strand, within cusAat 1380.141 kb on + strand, within cusAat 1380.141 kb on + strand, within cusAat 1380.142 kb on - strand, within cusAat 1380.451 kb on - strandat 1380.514 kb on - strandat 1380.514 kb on - strandat 1380.641 kb on + strand, within OKGIIK_06275at 1380.897 kb on + strandat 1380.927 kb on + strandat 1380.927 kb on + strandat 1380.927 kb on + strandat 1380.974 kb on + strandat 1380.975 kb on - strandat 1380.975 kb on - strandat 1381.061 kb on + strand, within OKGIIK_06280at 1381.062 kb on - strand, within OKGIIK_06280at 1381.062 kb on - strand, within OKGIIK_06280at 1381.092 kb on + strand, within OKGIIK_06280at 1381.150 kb on + strand, within OKGIIK_06280at 1381.152 kb on + strand, within OKGIIK_06280at 1381.152 kb on + strand, within OKGIIK_06280at 1381.152 kb on + strand, within OKGIIK_06280at 1381.153 kb on - strand, within OKGIIK_06280at 1381.153 kb on - strand, within OKGIIK_06280at 1381.153 kb on - strand, within OKGIIK_06280at 1381.566 kb on + strandat 1381.663 kb on + strandat 1381.663 kb on + strandat 1381.663 kb on + strandat 1381.663 kb on + strandat 1381.663 kb on + strandat 1381.664 kb on - strandat 1381.664 kb on - strandat 1381.699 kb on + strand, within OKGIIK_06285at 1381.700 kb on - strand, within OKGIIK_06285at 1381.817 kb on + strand, within OKGIIK_06285at 1381.817 kb on + strand, within OKGIIK_06285at 1381.817 kb on + strand, within OKGIIK_06285at 1381.817 kb on + strand, within OKGIIK_06285at 1381.817 kb on + strand, within OKGIIK_06285at 1381.818 kb on - strand, within OKGIIK_06285at 1381.818 kb on - strand, within OKGIIK_06285at 1381.818 kb on - strand, within OKGIIK_06285at 1381.823 kb on + strand, within OKGIIK_06285at 1381.886 kb on + strand, within OKGIIK_06285at 1381.886 kb on + strand, within OKGIIK_06285at 1382.042 kb on + strand, within OKGIIK_06285at 1382.042 kb on + strand, within OKGIIK_06285at 1382.042 kb on + strand, within OKGIIK_06285at 1382.105 kb on + strand, within OKGIIK_06285at 1382.120 kb on + strand, within OKGIIK_06285at 1382.121 kb on - strand, within OKGIIK_06285at 1382.121 kb on - strand, within OKGIIK_06285at 1382.121 kb on - strand, within OKGIIK_06285at 1382.121 kb on - strand, within OKGIIK_06285at 1382.121 kb on - strand, within OKGIIK_06285at 1382.301 kb on + strand, within OKGIIK_06285at 1382.301 kb on + strand, within OKGIIK_06285at 1382.301 kb on + strand, within OKGIIK_06285at 1382.301 kb on + strand, within OKGIIK_06285at 1382.301 kb on + strand, within OKGIIK_06285at 1382.301 kb on + strand, within OKGIIK_06285at 1382.301 kb on + strand, within OKGIIK_06285at 1382.301 kb on + strand, within OKGIIK_06285at 1382.301 kb on + strand, within OKGIIK_06285at 1382.301 kb on + strand, within OKGIIK_06285at 1382.302 kb on - strand, within OKGIIK_06285at 1382.302 kb on - strand, within OKGIIK_06285

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,380,042 + cusA OKGIIK_06270 0.85 -0.9
1,380,042 + cusA OKGIIK_06270 0.85 +0.4
1,380,043 - cusA OKGIIK_06270 0.85 +0.0
1,380,061 + cusA OKGIIK_06270 0.86 +0.4
1,380,105 - cusA OKGIIK_06270 0.87 +0.3
1,380,141 + cusA OKGIIK_06270 0.88 +0.5
1,380,141 + cusA OKGIIK_06270 0.88 +0.9
1,380,141 + cusA OKGIIK_06270 0.88 +0.2
1,380,141 + cusA OKGIIK_06270 0.88 -0.6
1,380,142 - cusA OKGIIK_06270 0.88 +1.5
1,380,451 - -1.3
1,380,514 - -0.5
1,380,514 - +0.4
1,380,641 + OKGIIK_06275 0.42 +0.2
1,380,897 + -0.5
1,380,927 + +0.2
1,380,927 + -1.8
1,380,927 + +1.1
1,380,974 + -1.9
1,380,975 - +0.4
1,380,975 - -0.6
1,381,061 + OKGIIK_06280 0.15 +0.5
1,381,062 - OKGIIK_06280 0.15 -2.1
1,381,062 - OKGIIK_06280 0.15 +0.0
1,381,092 + OKGIIK_06280 0.20 +0.5
1,381,150 + OKGIIK_06280 0.30 +0.2
1,381,152 + OKGIIK_06280 0.30 -1.4
1,381,152 + OKGIIK_06280 0.30 -1.3
1,381,152 + OKGIIK_06280 0.30 -0.5
1,381,153 - OKGIIK_06280 0.30 +0.5
1,381,153 - OKGIIK_06280 0.30 +0.3
1,381,153 - OKGIIK_06280 0.30 -1.5
1,381,566 + +0.0
1,381,663 + +0.2
1,381,663 + -0.8
1,381,663 + +0.6
1,381,663 + -0.3
1,381,663 + -1.3
1,381,664 - -1.0
1,381,664 - +0.5
1,381,699 + OKGIIK_06285 0.12 -1.1
1,381,700 - OKGIIK_06285 0.13 -2.3
1,381,817 + OKGIIK_06285 0.25 +0.2
1,381,817 + OKGIIK_06285 0.25 -1.5
1,381,817 + OKGIIK_06285 0.25 -0.4
1,381,817 + OKGIIK_06285 0.25 +0.5
1,381,817 + OKGIIK_06285 0.25 -0.9
1,381,818 - OKGIIK_06285 0.26 -0.8
1,381,818 - OKGIIK_06285 0.26 +0.5
1,381,818 - OKGIIK_06285 0.26 -0.4
1,381,823 + OKGIIK_06285 0.26 -1.2
1,381,886 + OKGIIK_06285 0.33 -1.1
1,381,886 + OKGIIK_06285 0.33 +0.3
1,382,042 + OKGIIK_06285 0.50 +0.0
1,382,042 + OKGIIK_06285 0.50 +0.7
1,382,042 + OKGIIK_06285 0.50 -1.3
1,382,105 + OKGIIK_06285 0.57 +0.1
1,382,120 + OKGIIK_06285 0.59 -1.3
1,382,121 - OKGIIK_06285 0.59 +0.8
1,382,121 - OKGIIK_06285 0.59 -0.5
1,382,121 - OKGIIK_06285 0.59 -2.2
1,382,121 - OKGIIK_06285 0.59 -0.4
1,382,121 - OKGIIK_06285 0.59 -0.3
1,382,301 + OKGIIK_06285 0.79 -0.5
1,382,301 + OKGIIK_06285 0.79 -1.5
1,382,301 + OKGIIK_06285 0.79 -1.1
1,382,301 + OKGIIK_06285 0.79 -1.6
1,382,301 + OKGIIK_06285 0.79 +0.2
1,382,301 + OKGIIK_06285 0.79 +2.3
1,382,301 + OKGIIK_06285 0.79 +2.1
1,382,301 + OKGIIK_06285 0.79 -0.2
1,382,301 + OKGIIK_06285 0.79 -1.8
1,382,301 + OKGIIK_06285 0.79 -0.5
1,382,302 - OKGIIK_06285 0.79 -1.2
1,382,302 - OKGIIK_06285 0.79 +0.1

Or see this region's nucleotide sequence