Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03835

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_03830 and OKGIIK_03835 are separated by 38 nucleotidesOKGIIK_03835 and ylaK overlap by 4 nucleotides OKGIIK_03830: OKGIIK_03830 - Methyltransf-25 domain-containing protein, at 844,264 to 845,370 _03830 OKGIIK_03835: OKGIIK_03835 - Bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 845,409 to 846,215 _03835 OKGIIK_03840: ylaK - phosphate starvation-inducible protein PhoH, at 846,212 to 847,594 ylaK Position (kb) 845 846 847Strain fitness (log2 ratio) -2 -1 0 1at 844.607 kb on + strand, within OKGIIK_03830at 844.607 kb on + strand, within OKGIIK_03830at 844.648 kb on - strand, within OKGIIK_03830at 844.648 kb on - strand, within OKGIIK_03830at 845.186 kb on + strand, within OKGIIK_03830at 845.219 kb on + strand, within OKGIIK_03830at 845.219 kb on + strand, within OKGIIK_03830at 845.219 kb on + strand, within OKGIIK_03830at 845.219 kb on + strand, within OKGIIK_03830at 845.220 kb on - strand, within OKGIIK_03830at 845.220 kb on - strand, within OKGIIK_03830at 845.220 kb on - strand, within OKGIIK_03830at 845.365 kb on + strandat 845.366 kb on - strandat 845.366 kb on - strandat 845.366 kb on - strandat 845.366 kb on - strandat 845.380 kb on + strandat 845.381 kb on - strandat 845.381 kb on - strandat 845.449 kb on + strandat 845.449 kb on + strandat 845.449 kb on + strandat 845.449 kb on + strandat 845.449 kb on + strandat 845.449 kb on + strandat 845.449 kb on + strandat 845.450 kb on - strandat 845.476 kb on + strandat 845.476 kb on + strandat 845.476 kb on + strandat 845.476 kb on + strandat 845.476 kb on + strandat 845.476 kb on + strandat 845.476 kb on + strandat 845.476 kb on + strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.482 kb on - strandat 845.620 kb on + strand, within OKGIIK_03835at 845.620 kb on + strand, within OKGIIK_03835at 845.620 kb on + strand, within OKGIIK_03835at 845.620 kb on + strand, within OKGIIK_03835at 845.620 kb on + strand, within OKGIIK_03835at 845.620 kb on + strand, within OKGIIK_03835at 845.620 kb on + strand, within OKGIIK_03835at 845.620 kb on + strand, within OKGIIK_03835at 845.621 kb on - strand, within OKGIIK_03835at 845.621 kb on - strand, within OKGIIK_03835at 845.621 kb on - strand, within OKGIIK_03835at 845.621 kb on - strand, within OKGIIK_03835at 845.621 kb on - strand, within OKGIIK_03835at 845.621 kb on - strand, within OKGIIK_03835at 845.623 kb on + strand, within OKGIIK_03835at 845.624 kb on - strand, within OKGIIK_03835at 845.866 kb on - strand, within OKGIIK_03835at 846.030 kb on + strand, within OKGIIK_03835at 846.030 kb on + strand, within OKGIIK_03835at 846.030 kb on + strand, within OKGIIK_03835at 846.030 kb on + strand, within OKGIIK_03835at 846.030 kb on + strand, within OKGIIK_03835at 846.030 kb on + strand, within OKGIIK_03835at 846.030 kb on + strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.031 kb on - strand, within OKGIIK_03835at 846.312 kb on + strandat 846.312 kb on + strandat 846.312 kb on + strandat 846.312 kb on + strandat 846.313 kb on - strandat 846.313 kb on - strandat 846.313 kb on - strandat 846.313 kb on - strandat 846.313 kb on - strandat 846.342 kb on + strandat 846.342 kb on + strandat 846.342 kb on + strandat 846.342 kb on + strandat 846.343 kb on - strandat 846.463 kb on - strand, within ylaKat 846.463 kb on - strand, within ylaKat 846.463 kb on - strand, within ylaKat 846.963 kb on + strand, within ylaKat 846.963 kb on + strand, within ylaKat 846.963 kb on + strand, within ylaKat 846.963 kb on + strand, within ylaKat 846.963 kb on + strand, within ylaKat 846.963 kb on + strand, within ylaKat 846.964 kb on - strand, within ylaKat 846.964 kb on - strand, within ylaKat 846.964 kb on - strand, within ylaKat 846.964 kb on - strand, within ylaKat 846.964 kb on - strand, within ylaKat 846.982 kb on - strand, within ylaKat 847.014 kb on + strand, within ylaKat 847.014 kb on + strand, within ylaKat 847.015 kb on - strand, within ylaKat 847.098 kb on + strand, within ylaKat 847.098 kb on + strand, within ylaKat 847.098 kb on + strand, within ylaKat 847.098 kb on + strand, within ylaKat 847.098 kb on + strand, within ylaKat 847.099 kb on - strand, within ylaKat 847.099 kb on - strand, within ylaKat 847.099 kb on - strand, within ylaKat 847.099 kb on - strand, within ylaKat 847.099 kb on - strand, within ylaKat 847.099 kb on - strand, within ylaKat 847.099 kb on - strand, within ylaKat 847.099 kb on - strand, within ylaKat 847.099 kb on - strand, within ylaKat 847.099 kb on - strand, within ylaKat 847.099 kb on - strand, within ylaKat 847.137 kb on + strand, within ylaKat 847.137 kb on + strand, within ylaK

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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844,607 + OKGIIK_03830 0.31 +0.5
844,607 + OKGIIK_03830 0.31 -1.1
844,648 - OKGIIK_03830 0.35 -1.6
844,648 - OKGIIK_03830 0.35 +0.3
845,186 + OKGIIK_03830 0.83 -0.5
845,219 + OKGIIK_03830 0.86 -0.7
845,219 + OKGIIK_03830 0.86 -0.5
845,219 + OKGIIK_03830 0.86 +0.6
845,219 + OKGIIK_03830 0.86 -2.6
845,220 - OKGIIK_03830 0.86 -0.3
845,220 - OKGIIK_03830 0.86 -1.0
845,220 - OKGIIK_03830 0.86 -0.9
845,365 + +0.2
845,366 - +1.5
845,366 - -0.6
845,366 - -0.7
845,366 - -0.7
845,380 + +0.3
845,381 - +0.3
845,381 - +1.5
845,449 + +0.2
845,449 + -1.1
845,449 + +1.6
845,449 + -0.3
845,449 + +0.0
845,449 + -0.9
845,449 + -1.5
845,450 - -0.9
845,476 + -0.1
845,476 + -0.8
845,476 + +1.7
845,476 + -0.2
845,476 + -0.5
845,476 + +0.0
845,476 + -0.1
845,476 + +0.0
845,477 - -0.1
845,477 - -1.0
845,477 - -0.8
845,477 - -0.3
845,477 - -0.0
845,477 - +0.7
845,477 - -0.1
845,477 - -0.6
845,477 - -0.0
845,477 - -1.5
845,477 - -0.1
845,477 - -1.5
845,477 - +0.5
845,477 - +1.1
845,482 - -1.1
845,620 + OKGIIK_03835 0.26 -1.1
845,620 + OKGIIK_03835 0.26 -1.1
845,620 + OKGIIK_03835 0.26 +0.6
845,620 + OKGIIK_03835 0.26 +1.1
845,620 + OKGIIK_03835 0.26 +0.9
845,620 + OKGIIK_03835 0.26 -0.5
845,620 + OKGIIK_03835 0.26 -0.1
845,620 + OKGIIK_03835 0.26 -2.1
845,621 - OKGIIK_03835 0.26 +0.5
845,621 - OKGIIK_03835 0.26 +0.1
845,621 - OKGIIK_03835 0.26 +1.4
845,621 - OKGIIK_03835 0.26 -1.1
845,621 - OKGIIK_03835 0.26 -0.7
845,621 - OKGIIK_03835 0.26 +0.1
845,623 + OKGIIK_03835 0.27 -2.7
845,624 - OKGIIK_03835 0.27 -0.2
845,866 - OKGIIK_03835 0.57 -0.0
846,030 + OKGIIK_03835 0.77 +0.7
846,030 + OKGIIK_03835 0.77 -0.8
846,030 + OKGIIK_03835 0.77 +0.5
846,030 + OKGIIK_03835 0.77 -1.5
846,030 + OKGIIK_03835 0.77 +0.4
846,030 + OKGIIK_03835 0.77 -1.1
846,030 + OKGIIK_03835 0.77 -2.4
846,031 - OKGIIK_03835 0.77 -1.1
846,031 - OKGIIK_03835 0.77 -0.5
846,031 - OKGIIK_03835 0.77 -1.0
846,031 - OKGIIK_03835 0.77 +0.5
846,031 - OKGIIK_03835 0.77 +0.1
846,031 - OKGIIK_03835 0.77 -0.8
846,031 - OKGIIK_03835 0.77 -0.4
846,031 - OKGIIK_03835 0.77 -0.1
846,031 - OKGIIK_03835 0.77 -0.2
846,031 - OKGIIK_03835 0.77 +0.5
846,031 - OKGIIK_03835 0.77 -2.0
846,031 - OKGIIK_03835 0.77 -0.5
846,031 - OKGIIK_03835 0.77 -0.6
846,312 + +0.6
846,312 + -1.3
846,312 + -1.1
846,312 + -0.5
846,313 - -0.1
846,313 - +1.2
846,313 - -1.3
846,313 - +1.5
846,313 - +0.5
846,342 + +0.2
846,342 + +0.7
846,342 + -0.1
846,342 + -0.5
846,343 - -0.3
846,463 - ylaK OKGIIK_03840 0.18 -1.2
846,463 - ylaK OKGIIK_03840 0.18 +0.1
846,463 - ylaK OKGIIK_03840 0.18 -2.0
846,963 + ylaK OKGIIK_03840 0.54 -0.8
846,963 + ylaK OKGIIK_03840 0.54 -0.1
846,963 + ylaK OKGIIK_03840 0.54 +0.5
846,963 + ylaK OKGIIK_03840 0.54 -0.6
846,963 + ylaK OKGIIK_03840 0.54 +1.3
846,963 + ylaK OKGIIK_03840 0.54 +0.9
846,964 - ylaK OKGIIK_03840 0.54 +0.6
846,964 - ylaK OKGIIK_03840 0.54 +0.6
846,964 - ylaK OKGIIK_03840 0.54 +0.8
846,964 - ylaK OKGIIK_03840 0.54 -0.1
846,964 - ylaK OKGIIK_03840 0.54 -0.5
846,982 - ylaK OKGIIK_03840 0.56 -0.3
847,014 + ylaK OKGIIK_03840 0.58 +0.5
847,014 + ylaK OKGIIK_03840 0.58 -0.8
847,015 - ylaK OKGIIK_03840 0.58 -0.4
847,098 + ylaK OKGIIK_03840 0.64 +0.3
847,098 + ylaK OKGIIK_03840 0.64 +0.8
847,098 + ylaK OKGIIK_03840 0.64 -0.1
847,098 + ylaK OKGIIK_03840 0.64 +1.5
847,098 + ylaK OKGIIK_03840 0.64 +0.4
847,099 - ylaK OKGIIK_03840 0.64 -1.0
847,099 - ylaK OKGIIK_03840 0.64 -0.8
847,099 - ylaK OKGIIK_03840 0.64 +0.5
847,099 - ylaK OKGIIK_03840 0.64 +0.1
847,099 - ylaK OKGIIK_03840 0.64 -0.7
847,099 - ylaK OKGIIK_03840 0.64 -0.5
847,099 - ylaK OKGIIK_03840 0.64 -0.3
847,099 - ylaK OKGIIK_03840 0.64 -0.2
847,099 - ylaK OKGIIK_03840 0.64 +0.2
847,099 - ylaK OKGIIK_03840 0.64 -1.1
847,099 - ylaK OKGIIK_03840 0.64 +0.6
847,137 + ylaK OKGIIK_03840 0.67 +0.9
847,137 + ylaK OKGIIK_03840 0.67 +0.4

Or see this region's nucleotide sequence