Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lptC and OKGIIK_02285 overlap by 4 nucleotides OKGIIK_02285 and gutQ are separated by 66 nucleotides gutQ and OKGIIK_02295 are separated by 207 nucleotides OKGIIK_02295 and murA are separated by 88 nucleotides
OKGIIK_02280: lptC - LPS export ABC transporter periplasmic protein LptC, at 532,961 to 533,557
lptC
OKGIIK_02285: OKGIIK_02285 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC, at 533,554 to 534,102
_02285
OKGIIK_02290: gutQ - D-arabinose 5-phosphate isomerase, at 534,169 to 535,188
gutQ
OKGIIK_02295: OKGIIK_02295 - BolA family transcriptional regulator, at 535,396 to 535,638
_02295
OKGIIK_02300: murA - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 535,727 to 536,986
murA
Position (kb) 534
535
536 Strain fitness (log2 ratio) -2
-1
0
1
2 at 534.114 kb on + strand at 534.114 kb on + strand at 534.114 kb on + strand at 534.114 kb on + strand at 534.114 kb on + strand at 534.115 kb on - strand at 534.115 kb on - strand at 534.115 kb on - strand at 534.115 kb on - strand at 534.115 kb on - strand at 534.115 kb on - strand at 534.115 kb on - strand at 534.115 kb on - strand at 534.115 kb on - strand at 534.115 kb on - strand at 535.257 kb on - strand at 535.290 kb on + strand at 535.290 kb on + strand at 535.300 kb on + strand at 535.300 kb on + strand at 535.300 kb on + strand at 535.311 kb on + strand at 535.311 kb on + strand at 535.311 kb on + strand at 535.311 kb on + strand at 535.311 kb on + strand at 535.311 kb on + strand at 535.380 kb on + strand at 535.380 kb on + strand at 535.380 kb on + strand at 535.380 kb on + strand at 535.380 kb on + strand at 535.380 kb on + strand at 535.546 kb on + strand, within OKGIIK_02295 at 535.546 kb on + strand, within OKGIIK_02295 at 535.546 kb on + strand, within OKGIIK_02295 at 535.546 kb on + strand, within OKGIIK_02295 at 535.546 kb on + strand, within OKGIIK_02295 at 535.546 kb on + strand, within OKGIIK_02295 at 535.636 kb on + strand at 535.636 kb on + strand at 535.698 kb on + strand at 535.720 kb on + strand at 535.720 kb on + strand at 535.720 kb on + strand at 535.720 kb on + strand at 535.720 kb on + strand at 535.726 kb on + strand at 535.726 kb on + strand at 535.726 kb on + strand at 535.726 kb on + strand at 535.726 kb on + strand at 535.726 kb on + strand at 535.726 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 534,114 + +0.2 534,114 + -2.0 534,114 + -0.9 534,114 + -0.3 534,114 + +0.3 534,115 - +0.2 534,115 - -0.6 534,115 - +0.6 534,115 - +0.0 534,115 - +0.4 534,115 - -0.5 534,115 - -0.5 534,115 - +0.9 534,115 - +0.1 534,115 - -0.9 535,257 - +0.7 535,290 + +0.0 535,290 + +1.0 535,300 + +0.7 535,300 + +1.2 535,300 + +0.0 535,311 + +0.7 535,311 + -0.8 535,311 + -1.6 535,311 + -1.0 535,311 + +0.0 535,311 + +0.1 535,380 + -0.2 535,380 + +0.8 535,380 + -0.8 535,380 + +1.4 535,380 + +1.1 535,380 + -0.4 535,546 + OKGIIK_02295 0.62 -1.8 535,546 + OKGIIK_02295 0.62 -0.9 535,546 + OKGIIK_02295 0.62 +1.1 535,546 + OKGIIK_02295 0.62 -0.6 535,546 + OKGIIK_02295 0.62 -0.6 535,546 + OKGIIK_02295 0.62 -1.3 535,636 + -0.3 535,636 + -0.2 535,698 + +2.2 535,720 + +0.4 535,720 + +0.6 535,720 + -0.0 535,720 + +0.1 535,720 + -2.4 535,726 + +0.4 535,726 + -1.2 535,726 + +0.1 535,726 + +0.2 535,726 + +0.2 535,726 + +1.3 535,726 + +0.7
Or see this region's nucleotide sequence