Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_01270 and OKGIIK_01275 overlap by 4 nucleotides OKGIIK_01275 and OKGIIK_01280 are separated by 336 nucleotides OKGIIK_01280 and fixX overlap by 4 nucleotides
OKGIIK_01270: OKGIIK_01270 - Transcriptional regulator, at 279,278 to 279,619
_01270
OKGIIK_01275: OKGIIK_01275 - DUF6516 domain-containing protein, at 279,616 to 279,915
_01275
OKGIIK_01280: OKGIIK_01280 - Glyco-trans-2-like domain-containing protein, at 280,252 to 282,354
_01280
OKGIIK_01285: fixX - electron transfer flavoprotein-ubiquinone oxidoreductase, at 282,351 to 283,964
fixX
Position (kb) 280
281
282
283 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 279.280 kb on - strand at 279.322 kb on - strand, within OKGIIK_01270 at 279.357 kb on - strand, within OKGIIK_01270 at 279.357 kb on - strand, within OKGIIK_01270 at 279.357 kb on - strand, within OKGIIK_01270 at 279.357 kb on - strand, within OKGIIK_01270 at 279.357 kb on - strand, within OKGIIK_01270 at 279.357 kb on - strand, within OKGIIK_01270 at 279.689 kb on + strand, within OKGIIK_01275 at 279.689 kb on + strand, within OKGIIK_01275 at 279.689 kb on + strand, within OKGIIK_01275 at 279.689 kb on + strand, within OKGIIK_01275 at 279.689 kb on + strand, within OKGIIK_01275 at 279.689 kb on + strand, within OKGIIK_01275 at 279.690 kb on - strand, within OKGIIK_01275 at 279.690 kb on - strand, within OKGIIK_01275 at 279.690 kb on - strand, within OKGIIK_01275 at 279.690 kb on - strand, within OKGIIK_01275 at 279.690 kb on - strand, within OKGIIK_01275 at 279.690 kb on - strand, within OKGIIK_01275 at 279.746 kb on + strand, within OKGIIK_01275 at 279.746 kb on + strand, within OKGIIK_01275 at 279.746 kb on + strand, within OKGIIK_01275 at 279.747 kb on - strand, within OKGIIK_01275 at 279.747 kb on - strand, within OKGIIK_01275 at 279.754 kb on + strand, within OKGIIK_01275 at 279.754 kb on + strand, within OKGIIK_01275 at 279.754 kb on + strand, within OKGIIK_01275 at 279.754 kb on + strand, within OKGIIK_01275 at 279.754 kb on + strand, within OKGIIK_01275 at 279.755 kb on - strand, within OKGIIK_01275 at 279.755 kb on - strand, within OKGIIK_01275 at 279.788 kb on + strand, within OKGIIK_01275 at 279.788 kb on + strand, within OKGIIK_01275 at 279.788 kb on + strand, within OKGIIK_01275 at 279.788 kb on + strand, within OKGIIK_01275 at 279.788 kb on + strand, within OKGIIK_01275 at 279.788 kb on + strand, within OKGIIK_01275 at 279.788 kb on + strand, within OKGIIK_01275 at 279.788 kb on + strand, within OKGIIK_01275 at 279.788 kb on + strand, within OKGIIK_01275 at 279.789 kb on - strand, within OKGIIK_01275 at 279.789 kb on - strand, within OKGIIK_01275 at 279.789 kb on - strand, within OKGIIK_01275 at 279.789 kb on - strand, within OKGIIK_01275 at 279.789 kb on - strand, within OKGIIK_01275 at 279.789 kb on - strand, within OKGIIK_01275 at 279.789 kb on - strand, within OKGIIK_01275 at 279.789 kb on - strand, within OKGIIK_01275 at 279.789 kb on - strand, within OKGIIK_01275 at 279.794 kb on + strand, within OKGIIK_01275 at 279.794 kb on + strand, within OKGIIK_01275 at 279.794 kb on + strand, within OKGIIK_01275 at 279.794 kb on + strand, within OKGIIK_01275 at 279.794 kb on + strand, within OKGIIK_01275 at 279.794 kb on + strand, within OKGIIK_01275 at 279.794 kb on + strand, within OKGIIK_01275 at 279.794 kb on + strand, within OKGIIK_01275 at 279.794 kb on + strand, within OKGIIK_01275 at 279.794 kb on + strand, within OKGIIK_01275 at 279.795 kb on - strand, within OKGIIK_01275 at 279.795 kb on - strand, within OKGIIK_01275 at 279.795 kb on - strand, within OKGIIK_01275 at 279.795 kb on - strand, within OKGIIK_01275 at 279.795 kb on - strand, within OKGIIK_01275 at 279.795 kb on - strand, within OKGIIK_01275 at 279.795 kb on - strand, within OKGIIK_01275 at 279.795 kb on - strand, within OKGIIK_01275 at 279.915 kb on + strand at 279.915 kb on + strand at 279.915 kb on + strand at 279.915 kb on + strand at 279.915 kb on + strand at 279.915 kb on + strand at 279.916 kb on - strand at 279.916 kb on - strand at 279.916 kb on - strand at 279.916 kb on - strand at 279.916 kb on - strand at 279.925 kb on + strand at 279.925 kb on + strand at 279.925 kb on + strand at 279.925 kb on + strand at 279.925 kb on + strand at 279.925 kb on + strand at 279.926 kb on - strand at 279.926 kb on - strand at 280.019 kb on - strand at 280.019 kb on - strand at 280.179 kb on + strand at 280.179 kb on + strand at 280.180 kb on - strand at 280.221 kb on + strand at 280.386 kb on - strand at 280.386 kb on - strand at 280.740 kb on - strand, within OKGIIK_01280 at 281.002 kb on + strand, within OKGIIK_01280 at 281.002 kb on + strand, within OKGIIK_01280 at 281.002 kb on + strand, within OKGIIK_01280 at 281.002 kb on + strand, within OKGIIK_01280 at 281.002 kb on + strand, within OKGIIK_01280 at 281.002 kb on + strand, within OKGIIK_01280 at 281.003 kb on - strand, within OKGIIK_01280 at 281.003 kb on - strand, within OKGIIK_01280 at 281.057 kb on + strand, within OKGIIK_01280 at 281.058 kb on - strand, within OKGIIK_01280 at 281.058 kb on - strand, within OKGIIK_01280 at 281.058 kb on - strand, within OKGIIK_01280 at 281.519 kb on + strand, within OKGIIK_01280 at 281.519 kb on + strand, within OKGIIK_01280 at 281.519 kb on + strand, within OKGIIK_01280 at 281.519 kb on + strand, within OKGIIK_01280 at 281.520 kb on - strand, within OKGIIK_01280 at 281.520 kb on - strand, within OKGIIK_01280 at 281.520 kb on - strand, within OKGIIK_01280 at 281.520 kb on - strand, within OKGIIK_01280 at 281.522 kb on + strand, within OKGIIK_01280 at 281.522 kb on + strand, within OKGIIK_01280 at 281.522 kb on + strand, within OKGIIK_01280 at 281.523 kb on - strand, within OKGIIK_01280 at 281.523 kb on - strand, within OKGIIK_01280 at 281.573 kb on + strand, within OKGIIK_01280 at 281.573 kb on + strand, within OKGIIK_01280 at 281.574 kb on - strand, within OKGIIK_01280 at 281.574 kb on - strand, within OKGIIK_01280 at 281.574 kb on - strand, within OKGIIK_01280 at 281.576 kb on + strand, within OKGIIK_01280 at 281.577 kb on - strand, within OKGIIK_01280 at 281.577 kb on - strand, within OKGIIK_01280 at 281.577 kb on - strand, within OKGIIK_01280 at 281.589 kb on - strand, within OKGIIK_01280 at 281.589 kb on - strand, within OKGIIK_01280 at 281.657 kb on + strand, within OKGIIK_01280 at 281.657 kb on + strand, within OKGIIK_01280 at 281.657 kb on + strand, within OKGIIK_01280 at 281.657 kb on + strand, within OKGIIK_01280 at 281.657 kb on + strand, within OKGIIK_01280 at 281.658 kb on - strand, within OKGIIK_01280 at 281.658 kb on - strand, within OKGIIK_01280 at 281.658 kb on - strand, within OKGIIK_01280 at 281.658 kb on - strand, within OKGIIK_01280 at 281.658 kb on - strand, within OKGIIK_01280 at 281.658 kb on - strand, within OKGIIK_01280 at 281.658 kb on - strand, within OKGIIK_01280 at 281.658 kb on - strand, within OKGIIK_01280 at 281.777 kb on + strand, within OKGIIK_01280 at 282.012 kb on + strand, within OKGIIK_01280 at 282.084 kb on + strand, within OKGIIK_01280 at 282.085 kb on - strand, within OKGIIK_01280 at 282.293 kb on + strand at 282.293 kb on + strand at 282.293 kb on + strand at 282.294 kb on - strand at 282.294 kb on - strand at 282.364 kb on + strand at 282.511 kb on + strand at 282.550 kb on + strand, within fixX at 282.550 kb on + strand, within fixX at 282.640 kb on + strand, within fixX at 282.685 kb on + strand, within fixX at 282.685 kb on + strand, within fixX at 282.686 kb on - strand, within fixX at 282.686 kb on - strand, within fixX at 282.686 kb on - strand, within fixX at 283.165 kb on + strand, within fixX at 283.165 kb on + strand, within fixX at 283.166 kb on - strand, within fixX at 283.198 kb on + strand, within fixX at 283.231 kb on + strand, within fixX at 283.231 kb on + strand, within fixX at 283.231 kb on + strand, within fixX at 283.232 kb on - strand, within fixX at 283.232 kb on - strand, within fixX at 283.232 kb on - strand, within fixX at 283.232 kb on - strand, within fixX at 283.232 kb on - strand, within fixX at 283.249 kb on + strand, within fixX at 283.250 kb on - strand, within fixX at 283.250 kb on - strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.253 kb on + strand, within fixX at 283.254 kb on - strand, within fixX at 283.254 kb on - strand, within fixX at 283.254 kb on - strand, within fixX at 283.254 kb on - strand, within fixX at 283.254 kb on - strand, within fixX at 283.254 kb on - strand, within fixX at 283.254 kb on - strand, within fixX at 283.254 kb on - strand, within fixX at 283.254 kb on - strand, within fixX at 283.254 kb on - strand, within fixX at 283.254 kb on - strand, within fixX at 283.254 kb on - strand, within fixX
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 279,280 - -0.3 279,322 - OKGIIK_01270 0.13 +0.6 279,357 - OKGIIK_01270 0.23 +0.4 279,357 - OKGIIK_01270 0.23 -0.3 279,357 - OKGIIK_01270 0.23 +0.2 279,357 - OKGIIK_01270 0.23 -0.6 279,357 - OKGIIK_01270 0.23 +1.7 279,357 - OKGIIK_01270 0.23 -0.0 279,689 + OKGIIK_01275 0.24 -2.1 279,689 + OKGIIK_01275 0.24 +0.7 279,689 + OKGIIK_01275 0.24 -0.9 279,689 + OKGIIK_01275 0.24 -0.5 279,689 + OKGIIK_01275 0.24 -0.1 279,689 + OKGIIK_01275 0.24 +0.3 279,690 - OKGIIK_01275 0.25 +0.2 279,690 - OKGIIK_01275 0.25 +0.9 279,690 - OKGIIK_01275 0.25 -0.1 279,690 - OKGIIK_01275 0.25 +0.2 279,690 - OKGIIK_01275 0.25 -1.7 279,690 - OKGIIK_01275 0.25 -0.0 279,746 + OKGIIK_01275 0.43 -1.4 279,746 + OKGIIK_01275 0.43 -0.9 279,746 + OKGIIK_01275 0.43 +0.6 279,747 - OKGIIK_01275 0.44 +0.3 279,747 - OKGIIK_01275 0.44 +0.9 279,754 + OKGIIK_01275 0.46 +0.8 279,754 + OKGIIK_01275 0.46 +0.0 279,754 + OKGIIK_01275 0.46 +0.3 279,754 + OKGIIK_01275 0.46 -0.3 279,754 + OKGIIK_01275 0.46 -2.3 279,755 - OKGIIK_01275 0.46 +0.6 279,755 - OKGIIK_01275 0.46 -2.1 279,788 + OKGIIK_01275 0.57 +0.9 279,788 + OKGIIK_01275 0.57 -1.2 279,788 + OKGIIK_01275 0.57 +0.8 279,788 + OKGIIK_01275 0.57 -0.2 279,788 + OKGIIK_01275 0.57 -2.9 279,788 + OKGIIK_01275 0.57 +1.0 279,788 + OKGIIK_01275 0.57 -0.6 279,788 + OKGIIK_01275 0.57 +1.9 279,788 + OKGIIK_01275 0.57 -1.4 279,789 - OKGIIK_01275 0.58 -1.2 279,789 - OKGIIK_01275 0.58 +0.3 279,789 - OKGIIK_01275 0.58 +0.6 279,789 - OKGIIK_01275 0.58 -0.6 279,789 - OKGIIK_01275 0.58 +0.7 279,789 - OKGIIK_01275 0.58 +1.4 279,789 - OKGIIK_01275 0.58 -0.3 279,789 - OKGIIK_01275 0.58 -0.2 279,789 - OKGIIK_01275 0.58 -1.1 279,794 + OKGIIK_01275 0.59 -1.8 279,794 + OKGIIK_01275 0.59 -1.9 279,794 + OKGIIK_01275 0.59 -0.4 279,794 + OKGIIK_01275 0.59 -0.9 279,794 + OKGIIK_01275 0.59 -1.7 279,794 + OKGIIK_01275 0.59 +0.1 279,794 + OKGIIK_01275 0.59 -2.3 279,794 + OKGIIK_01275 0.59 +1.0 279,794 + OKGIIK_01275 0.59 +1.4 279,794 + OKGIIK_01275 0.59 -0.2 279,795 - OKGIIK_01275 0.60 -0.1 279,795 - OKGIIK_01275 0.60 +0.4 279,795 - OKGIIK_01275 0.60 -0.9 279,795 - OKGIIK_01275 0.60 +0.1 279,795 - OKGIIK_01275 0.60 +0.0 279,795 - OKGIIK_01275 0.60 -0.4 279,795 - OKGIIK_01275 0.60 -1.2 279,795 - OKGIIK_01275 0.60 +1.4 279,915 + -0.1 279,915 + -1.3 279,915 + +0.2 279,915 + -0.4 279,915 + -0.1 279,915 + -1.5 279,916 - +0.2 279,916 - +1.2 279,916 - -0.9 279,916 - -1.8 279,916 - +0.2 279,925 + -1.2 279,925 + -0.5 279,925 + +1.4 279,925 + -1.8 279,925 + -0.2 279,925 + -0.5 279,926 - +0.7 279,926 - +0.9 280,019 - -0.9 280,019 - -2.2 280,179 + -0.4 280,179 + +0.4 280,180 - +0.9 280,221 + -0.5 280,386 - -2.1 280,386 - -1.2 280,740 - OKGIIK_01280 0.23 -0.6 281,002 + OKGIIK_01280 0.36 -0.9 281,002 + OKGIIK_01280 0.36 -0.3 281,002 + OKGIIK_01280 0.36 -0.0 281,002 + OKGIIK_01280 0.36 +0.5 281,002 + OKGIIK_01280 0.36 -0.2 281,002 + OKGIIK_01280 0.36 +0.5 281,003 - OKGIIK_01280 0.36 +0.4 281,003 - OKGIIK_01280 0.36 +1.0 281,057 + OKGIIK_01280 0.38 -0.8 281,058 - OKGIIK_01280 0.38 -0.6 281,058 - OKGIIK_01280 0.38 -1.9 281,058 - OKGIIK_01280 0.38 -0.8 281,519 + OKGIIK_01280 0.60 +0.1 281,519 + OKGIIK_01280 0.60 -1.4 281,519 + OKGIIK_01280 0.60 +0.5 281,519 + OKGIIK_01280 0.60 +0.5 281,520 - OKGIIK_01280 0.60 +0.1 281,520 - OKGIIK_01280 0.60 -1.1 281,520 - OKGIIK_01280 0.60 +1.4 281,520 - OKGIIK_01280 0.60 -1.1 281,522 + OKGIIK_01280 0.60 -1.8 281,522 + OKGIIK_01280 0.60 +0.1 281,522 + OKGIIK_01280 0.60 +0.1 281,523 - OKGIIK_01280 0.60 -1.6 281,523 - OKGIIK_01280 0.60 -1.3 281,573 + OKGIIK_01280 0.63 +0.2 281,573 + OKGIIK_01280 0.63 +0.1 281,574 - OKGIIK_01280 0.63 +2.2 281,574 - OKGIIK_01280 0.63 -0.6 281,574 - OKGIIK_01280 0.63 +0.7 281,576 + OKGIIK_01280 0.63 -0.1 281,577 - OKGIIK_01280 0.63 +0.2 281,577 - OKGIIK_01280 0.63 +0.7 281,577 - OKGIIK_01280 0.63 +0.7 281,589 - OKGIIK_01280 0.64 -0.9 281,589 - OKGIIK_01280 0.64 -1.4 281,657 + OKGIIK_01280 0.67 -1.2 281,657 + OKGIIK_01280 0.67 -0.6 281,657 + OKGIIK_01280 0.67 -0.9 281,657 + OKGIIK_01280 0.67 -0.0 281,657 + OKGIIK_01280 0.67 +0.4 281,658 - OKGIIK_01280 0.67 -1.3 281,658 - OKGIIK_01280 0.67 +0.6 281,658 - OKGIIK_01280 0.67 +0.7 281,658 - OKGIIK_01280 0.67 +0.3 281,658 - OKGIIK_01280 0.67 -0.2 281,658 - OKGIIK_01280 0.67 +0.3 281,658 - OKGIIK_01280 0.67 -0.4 281,658 - OKGIIK_01280 0.67 -0.9 281,777 + OKGIIK_01280 0.73 -0.3 282,012 + OKGIIK_01280 0.84 +0.1 282,084 + OKGIIK_01280 0.87 +0.1 282,085 - OKGIIK_01280 0.87 -1.2 282,293 + -1.4 282,293 + -0.6 282,293 + -0.8 282,294 - -2.1 282,294 - -1.6 282,364 + -1.6 282,511 + +0.4 282,550 + fixX OKGIIK_01285 0.12 -0.6 282,550 + fixX OKGIIK_01285 0.12 -0.9 282,640 + fixX OKGIIK_01285 0.18 -0.3 282,685 + fixX OKGIIK_01285 0.21 -1.4 282,685 + fixX OKGIIK_01285 0.21 -0.4 282,686 - fixX OKGIIK_01285 0.21 -1.2 282,686 - fixX OKGIIK_01285 0.21 +0.2 282,686 - fixX OKGIIK_01285 0.21 +0.1 283,165 + fixX OKGIIK_01285 0.50 +1.1 283,165 + fixX OKGIIK_01285 0.50 -0.6 283,166 - fixX OKGIIK_01285 0.50 +2.0 283,198 + fixX OKGIIK_01285 0.52 -0.6 283,231 + fixX OKGIIK_01285 0.55 +0.7 283,231 + fixX OKGIIK_01285 0.55 +0.1 283,231 + fixX OKGIIK_01285 0.55 -1.5 283,232 - fixX OKGIIK_01285 0.55 -0.9 283,232 - fixX OKGIIK_01285 0.55 +1.1 283,232 - fixX OKGIIK_01285 0.55 -1.0 283,232 - fixX OKGIIK_01285 0.55 -0.0 283,232 - fixX OKGIIK_01285 0.55 -1.2 283,249 + fixX OKGIIK_01285 0.56 +1.0 283,250 - fixX OKGIIK_01285 0.56 -0.9 283,250 - fixX OKGIIK_01285 0.56 -1.6 283,253 + fixX OKGIIK_01285 0.56 +0.8 283,253 + fixX OKGIIK_01285 0.56 -1.9 283,253 + fixX OKGIIK_01285 0.56 -0.9 283,253 + fixX OKGIIK_01285 0.56 -0.9 283,253 + fixX OKGIIK_01285 0.56 +0.1 283,253 + fixX OKGIIK_01285 0.56 -2.4 283,253 + fixX OKGIIK_01285 0.56 -0.9 283,253 + fixX OKGIIK_01285 0.56 +0.2 283,253 + fixX OKGIIK_01285 0.56 -1.3 283,253 + fixX OKGIIK_01285 0.56 -0.8 283,253 + fixX OKGIIK_01285 0.56 -0.9 283,253 + fixX OKGIIK_01285 0.56 +0.7 283,253 + fixX OKGIIK_01285 0.56 -1.8 283,253 + fixX OKGIIK_01285 0.56 -0.4 283,253 + fixX OKGIIK_01285 0.56 -0.1 283,254 - fixX OKGIIK_01285 0.56 -0.8 283,254 - fixX OKGIIK_01285 0.56 -0.5 283,254 - fixX OKGIIK_01285 0.56 -1.5 283,254 - fixX OKGIIK_01285 0.56 +0.4 283,254 - fixX OKGIIK_01285 0.56 -2.1 283,254 - fixX OKGIIK_01285 0.56 -1.5 283,254 - fixX OKGIIK_01285 0.56 -0.6 283,254 - fixX OKGIIK_01285 0.56 -1.3 283,254 - fixX OKGIIK_01285 0.56 -1.8 283,254 - fixX OKGIIK_01285 0.56 -0.9 283,254 - fixX OKGIIK_01285 0.56 -1.5 283,254 - fixX OKGIIK_01285 0.56 -0.6
Or see this region's nucleotide sequence