Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06976

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06975 and MPMX19_06976 are separated by 102 nucleotidesMPMX19_06976 and MPMX19_06977 are separated by 80 nucleotides MPMX19_06975: MPMX19_06975 - HTH-type transcriptional regulator HdfR, at 252,490 to 253,449 _06975 MPMX19_06976: MPMX19_06976 - (2S)-methylsuccinyl-CoA dehydrogenase, at 253,552 to 255,255 _06976 MPMX19_06977: MPMX19_06977 - 2-oxoglutarate dehydrogenase E1 component, at 255,336 to 258,035 _06977 Position (kb) 253 254 255 256Strain fitness (log2 ratio) -2 -1 0 1 2at 253.010 kb on + strand, within MPMX19_06975at 253.011 kb on - strand, within MPMX19_06975at 253.011 kb on - strand, within MPMX19_06975at 253.100 kb on + strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.256 kb on + strand, within MPMX19_06975at 253.256 kb on + strand, within MPMX19_06975at 253.256 kb on + strand, within MPMX19_06975at 253.257 kb on - strand, within MPMX19_06975at 253.304 kb on + strand, within MPMX19_06975at 253.304 kb on + strand, within MPMX19_06975at 253.304 kb on + strand, within MPMX19_06975at 253.304 kb on + strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.427 kb on + strandat 253.428 kb on - strandat 253.428 kb on - strandat 253.428 kb on - strandat 253.428 kb on - strandat 253.428 kb on - strandat 253.495 kb on - strandat 253.673 kb on + strandat 253.673 kb on + strandat 253.674 kb on - strandat 253.674 kb on - strandat 253.803 kb on - strand, within MPMX19_06976at 253.803 kb on - strand, within MPMX19_06976at 253.803 kb on - strand, within MPMX19_06976at 253.803 kb on - strand, within MPMX19_06976at 253.803 kb on - strand, within MPMX19_06976at 253.910 kb on + strand, within MPMX19_06976at 254.075 kb on + strand, within MPMX19_06976at 254.489 kb on + strand, within MPMX19_06976at 254.930 kb on + strand, within MPMX19_06976at 254.930 kb on + strand, within MPMX19_06976at 254.930 kb on + strand, within MPMX19_06976at 254.931 kb on - strand, within MPMX19_06976at 254.931 kb on - strand, within MPMX19_06976at 255.035 kb on + strand, within MPMX19_06976at 255.035 kb on + strand, within MPMX19_06976at 255.035 kb on + strand, within MPMX19_06976at 255.035 kb on + strand, within MPMX19_06976at 255.036 kb on - strand, within MPMX19_06976at 255.036 kb on - strand, within MPMX19_06976at 255.036 kb on - strand, within MPMX19_06976at 255.279 kb on + strandat 255.281 kb on + strandat 255.281 kb on + strandat 255.281 kb on + strandat 255.281 kb on + strandat 255.282 kb on - strandat 255.538 kb on + strandat 255.538 kb on + strandat 255.538 kb on + strandat 255.538 kb on + strandat 255.539 kb on - strandat 255.539 kb on - strandat 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.641 kb on - strand, within MPMX19_06977at 255.641 kb on - strand, within MPMX19_06977at 255.641 kb on - strand, within MPMX19_06977at 255.641 kb on - strand, within MPMX19_06977at 255.641 kb on - strand, within MPMX19_06977at 255.641 kb on - strand, within MPMX19_06977at 255.709 kb on + strand, within MPMX19_06977at 255.710 kb on - strand, within MPMX19_06977at 255.908 kb on - strand, within MPMX19_06977at 255.908 kb on - strand, within MPMX19_06977at 256.165 kb on + strand, within MPMX19_06977at 256.165 kb on + strand, within MPMX19_06977at 256.165 kb on + strand, within MPMX19_06977at 256.166 kb on - strand, within MPMX19_06977at 256.166 kb on - strand, within MPMX19_06977at 256.185 kb on + strand, within MPMX19_06977at 256.186 kb on - strand, within MPMX19_06977at 256.192 kb on + strand, within MPMX19_06977at 256.193 kb on - strand, within MPMX19_06977at 256.193 kb on - strand, within MPMX19_06977

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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253,010 + MPMX19_06975 0.54 -0.2
253,011 - MPMX19_06975 0.54 +0.5
253,011 - MPMX19_06975 0.54 -1.6
253,100 + MPMX19_06975 0.64 -1.4
253,101 - MPMX19_06975 0.64 +0.5
253,101 - MPMX19_06975 0.64 -0.3
253,101 - MPMX19_06975 0.64 +0.1
253,101 - MPMX19_06975 0.64 +0.2
253,101 - MPMX19_06975 0.64 +1.2
253,256 + MPMX19_06975 0.80 +0.1
253,256 + MPMX19_06975 0.80 -1.1
253,256 + MPMX19_06975 0.80 -0.5
253,257 - MPMX19_06975 0.80 -0.4
253,304 + MPMX19_06975 0.85 +0.5
253,304 + MPMX19_06975 0.85 +1.5
253,304 + MPMX19_06975 0.85 -0.3
253,304 + MPMX19_06975 0.85 +0.8
253,305 - MPMX19_06975 0.85 +0.2
253,305 - MPMX19_06975 0.85 -1.1
253,305 - MPMX19_06975 0.85 -0.3
253,305 - MPMX19_06975 0.85 -0.6
253,305 - MPMX19_06975 0.85 -0.8
253,427 + +1.1
253,428 - -1.3
253,428 - -0.8
253,428 - +0.1
253,428 - -0.7
253,428 - -1.2
253,495 - -0.6
253,673 + -0.6
253,673 + -1.5
253,674 - -0.7
253,674 - +0.3
253,803 - MPMX19_06976 0.15 -2.6
253,803 - MPMX19_06976 0.15 -1.0
253,803 - MPMX19_06976 0.15 -0.1
253,803 - MPMX19_06976 0.15 -1.3
253,803 - MPMX19_06976 0.15 -1.0
253,910 + MPMX19_06976 0.21 +0.9
254,075 + MPMX19_06976 0.31 -0.8
254,489 + MPMX19_06976 0.55 +0.4
254,930 + MPMX19_06976 0.81 +0.1
254,930 + MPMX19_06976 0.81 -0.3
254,930 + MPMX19_06976 0.81 -0.5
254,931 - MPMX19_06976 0.81 -1.9
254,931 - MPMX19_06976 0.81 -0.8
255,035 + MPMX19_06976 0.87 +0.6
255,035 + MPMX19_06976 0.87 -0.6
255,035 + MPMX19_06976 0.87 +1.1
255,035 + MPMX19_06976 0.87 -1.6
255,036 - MPMX19_06976 0.87 -0.6
255,036 - MPMX19_06976 0.87 -1.0
255,036 - MPMX19_06976 0.87 -0.7
255,279 + +0.3
255,281 + -1.1
255,281 + -0.8
255,281 + -0.5
255,281 + -1.8
255,282 - -1.5
255,538 + -0.6
255,538 + -0.0
255,538 + +0.4
255,538 + -1.5
255,539 - +1.8
255,539 - +0.1
255,640 + MPMX19_06977 0.11 +0.4
255,640 + MPMX19_06977 0.11 +0.4
255,640 + MPMX19_06977 0.11 +0.3
255,640 + MPMX19_06977 0.11 -1.1
255,640 + MPMX19_06977 0.11 +0.6
255,640 + MPMX19_06977 0.11 +0.2
255,640 + MPMX19_06977 0.11 -1.1
255,640 + MPMX19_06977 0.11 -0.5
255,641 - MPMX19_06977 0.11 -1.4
255,641 - MPMX19_06977 0.11 +0.5
255,641 - MPMX19_06977 0.11 -1.9
255,641 - MPMX19_06977 0.11 +0.7
255,641 - MPMX19_06977 0.11 -0.2
255,641 - MPMX19_06977 0.11 +0.4
255,709 + MPMX19_06977 0.14 -1.2
255,710 - MPMX19_06977 0.14 +0.4
255,908 - MPMX19_06977 0.21 -0.3
255,908 - MPMX19_06977 0.21 +0.8
256,165 + MPMX19_06977 0.31 +0.6
256,165 + MPMX19_06977 0.31 -0.2
256,165 + MPMX19_06977 0.31 -0.7
256,166 - MPMX19_06977 0.31 -2.2
256,166 - MPMX19_06977 0.31 -0.2
256,185 + MPMX19_06977 0.31 -1.5
256,186 - MPMX19_06977 0.31 -1.4
256,192 + MPMX19_06977 0.32 -1.1
256,193 - MPMX19_06977 0.32 -1.8
256,193 - MPMX19_06977 0.32 +0.4

Or see this region's nucleotide sequence