Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06968

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06967 and MPMX19_06968 are separated by 217 nucleotidesMPMX19_06968 and MPMX19_06969 overlap by 4 nucleotidesMPMX19_06969 and MPMX19_06970 are separated by 8 nucleotidesMPMX19_06970 and MPMX19_06971 are separated by 23 nucleotides MPMX19_06967: MPMX19_06967 - hypothetical protein, at 244,274 to 245,032 _06967 MPMX19_06968: MPMX19_06968 - hypothetical protein, at 245,250 to 246,743 _06968 MPMX19_06969: MPMX19_06969 - hypothetical protein, at 246,740 to 246,994 _06969 MPMX19_06970: MPMX19_06970 - putative ABC transporter ATP-binding protein YknY, at 247,003 to 247,695 _06970 MPMX19_06971: MPMX19_06971 - Macrolide export ATP-binding/permease protein MacB, at 247,719 to 248,921 _06971 Position (kb) 245 246 247Strain fitness (log2 ratio) -3 -2 -1 0 1at 244.295 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.297 kb on + strandat 244.297 kb on + strandat 244.298 kb on - strandat 244.516 kb on + strand, within MPMX19_06967at 244.557 kb on + strand, within MPMX19_06967at 244.624 kb on + strand, within MPMX19_06967at 244.726 kb on - strand, within MPMX19_06967at 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.007 kb on - strandat 245.163 kb on + strandat 245.164 kb on - strandat 245.164 kb on - strandat 245.178 kb on + strandat 245.179 kb on - strandat 245.179 kb on - strandat 245.179 kb on - strandat 245.328 kb on + strandat 245.328 kb on + strandat 245.403 kb on + strand, within MPMX19_06968at 245.403 kb on + strand, within MPMX19_06968at 245.403 kb on + strand, within MPMX19_06968at 245.403 kb on + strand, within MPMX19_06968at 245.403 kb on + strand, within MPMX19_06968at 245.404 kb on - strand, within MPMX19_06968at 245.404 kb on - strand, within MPMX19_06968at 245.423 kb on + strand, within MPMX19_06968at 245.423 kb on + strand, within MPMX19_06968at 245.424 kb on - strand, within MPMX19_06968at 245.442 kb on + strand, within MPMX19_06968at 245.442 kb on + strand, within MPMX19_06968at 245.442 kb on + strand, within MPMX19_06968at 245.466 kb on + strand, within MPMX19_06968at 245.466 kb on + strand, within MPMX19_06968at 245.466 kb on + strand, within MPMX19_06968at 245.466 kb on + strand, within MPMX19_06968at 245.466 kb on + strand, within MPMX19_06968at 245.467 kb on - strand, within MPMX19_06968at 245.467 kb on - strand, within MPMX19_06968at 245.775 kb on + strand, within MPMX19_06968at 245.776 kb on - strand, within MPMX19_06968at 245.776 kb on - strand, within MPMX19_06968at 245.776 kb on - strand, within MPMX19_06968at 245.835 kb on + strand, within MPMX19_06968at 245.835 kb on + strand, within MPMX19_06968at 245.835 kb on + strand, within MPMX19_06968at 245.836 kb on - strand, within MPMX19_06968at 245.836 kb on - strand, within MPMX19_06968at 245.836 kb on - strand, within MPMX19_06968at 245.836 kb on - strand, within MPMX19_06968at 246.165 kb on + strand, within MPMX19_06968at 246.166 kb on - strand, within MPMX19_06968at 246.501 kb on + strand, within MPMX19_06968at 246.501 kb on + strand, within MPMX19_06968at 246.502 kb on - strand, within MPMX19_06968at 246.502 kb on - strand, within MPMX19_06968at 246.502 kb on - strand, within MPMX19_06968at 246.502 kb on - strand, within MPMX19_06968at 246.657 kb on + strandat 246.657 kb on + strandat 246.657 kb on + strandat 246.658 kb on - strandat 246.658 kb on - strandat 246.917 kb on + strand, within MPMX19_06969at 246.917 kb on + strand, within MPMX19_06969at 246.917 kb on + strand, within MPMX19_06969at 246.918 kb on - strand, within MPMX19_06969at 247.032 kb on + strandat 247.032 kb on + strandat 247.032 kb on + strandat 247.032 kb on + strandat 247.033 kb on - strandat 247.033 kb on - strandat 247.033 kb on - strandat 247.033 kb on - strandat 247.033 kb on - strandat 247.033 kb on - strandat 247.033 kb on - strandat 247.284 kb on - strand, within MPMX19_06970

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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244,295 + +0.4
244,295 + -2.1
244,295 + -1.0
244,295 + +1.0
244,295 + +0.0
244,295 + +0.3
244,296 - -0.2
244,296 - +1.1
244,296 - +0.5
244,296 - -1.1
244,296 - -0.9
244,296 - +0.5
244,296 - +1.1
244,296 - +1.0
244,297 + -1.1
244,297 + -0.5
244,298 - +0.5
244,516 + MPMX19_06967 0.32 -0.8
244,557 + MPMX19_06967 0.37 +0.7
244,624 + MPMX19_06967 0.46 +0.4
244,726 - MPMX19_06967 0.60 -2.9
245,006 + -1.0
245,006 + -0.6
245,006 + -0.1
245,006 + +0.6
245,006 + +0.2
245,006 + +0.5
245,006 + -1.5
245,006 + -0.5
245,007 - +0.2
245,163 + -0.6
245,164 - +0.7
245,164 - -0.4
245,178 + -0.5
245,179 - -0.4
245,179 - -0.1
245,179 - -1.0
245,328 + -0.4
245,328 + -0.5
245,403 + MPMX19_06968 0.10 +0.4
245,403 + MPMX19_06968 0.10 +0.8
245,403 + MPMX19_06968 0.10 +0.1
245,403 + MPMX19_06968 0.10 +1.1
245,403 + MPMX19_06968 0.10 -0.2
245,404 - MPMX19_06968 0.10 -1.3
245,404 - MPMX19_06968 0.10 -1.6
245,423 + MPMX19_06968 0.12 +1.5
245,423 + MPMX19_06968 0.12 +0.4
245,424 - MPMX19_06968 0.12 -1.2
245,442 + MPMX19_06968 0.13 +0.4
245,442 + MPMX19_06968 0.13 +0.1
245,442 + MPMX19_06968 0.13 -1.2
245,466 + MPMX19_06968 0.14 +1.5
245,466 + MPMX19_06968 0.14 -1.8
245,466 + MPMX19_06968 0.14 +1.0
245,466 + MPMX19_06968 0.14 -0.3
245,466 + MPMX19_06968 0.14 +0.5
245,467 - MPMX19_06968 0.15 +0.6
245,467 - MPMX19_06968 0.15 +1.0
245,775 + MPMX19_06968 0.35 -0.5
245,776 - MPMX19_06968 0.35 -0.1
245,776 - MPMX19_06968 0.35 -0.6
245,776 - MPMX19_06968 0.35 -0.4
245,835 + MPMX19_06968 0.39 +0.0
245,835 + MPMX19_06968 0.39 -1.1
245,835 + MPMX19_06968 0.39 -0.8
245,836 - MPMX19_06968 0.39 +0.2
245,836 - MPMX19_06968 0.39 -0.6
245,836 - MPMX19_06968 0.39 +0.1
245,836 - MPMX19_06968 0.39 -1.3
246,165 + MPMX19_06968 0.61 +0.3
246,166 - MPMX19_06968 0.61 +0.3
246,501 + MPMX19_06968 0.84 +0.2
246,501 + MPMX19_06968 0.84 +0.1
246,502 - MPMX19_06968 0.84 -1.3
246,502 - MPMX19_06968 0.84 -0.5
246,502 - MPMX19_06968 0.84 +0.1
246,502 - MPMX19_06968 0.84 -0.3
246,657 + +0.8
246,657 + -0.9
246,657 + -0.6
246,658 - -2.1
246,658 - +0.8
246,917 + MPMX19_06969 0.69 -0.1
246,917 + MPMX19_06969 0.69 -0.5
246,917 + MPMX19_06969 0.69 +1.1
246,918 - MPMX19_06969 0.70 +0.1
247,032 + -0.2
247,032 + +0.5
247,032 + -2.1
247,032 + -0.5
247,033 - -0.5
247,033 - +0.4
247,033 - -0.4
247,033 - -1.1
247,033 - +0.2
247,033 - +0.6
247,033 - -1.9
247,284 - MPMX19_06970 0.41 -0.5

Or see this region's nucleotide sequence