Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06951 and MPMX19_06952 are separated by 74 nucleotides MPMX19_06952 and MPMX19_06953 are separated by 16 nucleotides MPMX19_06953 and MPMX19_06954 are separated by 65 nucleotides
MPMX19_06951: MPMX19_06951 - Beta-ketoadipyl-CoA thiolase, at 227,421 to 228,626
_06951
MPMX19_06952: MPMX19_06952 - Electron transfer flavoprotein subunit alpha, at 228,701 to 229,636
_06952
MPMX19_06953: MPMX19_06953 - Electron transfer flavoprotein subunit beta, at 229,653 to 230,402
_06953
MPMX19_06954: MPMX19_06954 - hypothetical protein, at 230,468 to 231,445
_06954
Position (kb) 228
229
230 Strain fitness (log2 ratio) -2
-1
0
1
2 at 227.940 kb on + strand, within MPMX19_06951 at 228.624 kb on + strand at 228.624 kb on + strand at 228.624 kb on + strand at 228.624 kb on + strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.676 kb on + strand at 228.677 kb on - strand at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 229.534 kb on + strand, within MPMX19_06952 at 230.409 kb on + strand at 230.409 kb on + strand at 230.409 kb on + strand at 230.410 kb on - strand at 230.410 kb on - strand at 230.416 kb on + strand at 230.416 kb on + strand at 230.416 kb on + strand at 230.417 kb on - strand at 230.417 kb on - strand at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 227,940 + MPMX19_06951 0.43 -1.3 228,624 + +2.3 228,624 + -0.4 228,624 + +0.5 228,624 + -0.0 228,625 - -1.6 228,625 - +0.2 228,625 - +0.5 228,625 - +0.4 228,625 - -1.1 228,625 - +1.3 228,625 - -0.5 228,625 - +0.2 228,625 - +0.5 228,625 - -1.9 228,676 + -0.1 228,677 - -0.3 228,871 - MPMX19_06952 0.18 -0.3 228,871 - MPMX19_06952 0.18 -0.6 228,871 - MPMX19_06952 0.18 -0.7 228,871 - MPMX19_06952 0.18 +0.2 228,871 - MPMX19_06952 0.18 -0.9 228,871 - MPMX19_06952 0.18 -2.4 228,871 - MPMX19_06952 0.18 -1.5 228,871 - MPMX19_06952 0.18 -0.1 228,871 - MPMX19_06952 0.18 -2.6 228,871 - MPMX19_06952 0.18 -1.2 229,534 + MPMX19_06952 0.89 -0.8 230,409 + -0.3 230,409 + +0.9 230,409 + +1.0 230,410 - +0.1 230,410 - -0.6 230,416 + +0.1 230,416 + -0.1 230,416 + -0.2 230,417 - -0.2 230,417 - -0.1 230,596 - MPMX19_06954 0.13 -0.2 230,596 - MPMX19_06954 0.13 -0.1 230,596 - MPMX19_06954 0.13 -0.4 230,596 - MPMX19_06954 0.13 -0.9 230,596 - MPMX19_06954 0.13 -0.4
Or see this region's nucleotide sequence