Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06951

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06950 and MPMX19_06951 are separated by 191 nucleotidesMPMX19_06951 and MPMX19_06952 are separated by 74 nucleotides MPMX19_06950: MPMX19_06950 - Glycine cleavage system transcriptional activator, at 226,330 to 227,229 _06950 MPMX19_06951: MPMX19_06951 - Beta-ketoadipyl-CoA thiolase, at 227,421 to 228,626 _06951 MPMX19_06952: MPMX19_06952 - Electron transfer flavoprotein subunit alpha, at 228,701 to 229,636 _06952 Position (kb) 227 228 229Strain fitness (log2 ratio) -2 -1 0 1 2at 226.477 kb on + strand, within MPMX19_06950at 226.478 kb on - strand, within MPMX19_06950at 226.478 kb on - strand, within MPMX19_06950at 226.478 kb on - strand, within MPMX19_06950at 226.478 kb on - strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 227.020 kb on + strand, within MPMX19_06950at 227.021 kb on - strand, within MPMX19_06950at 227.143 kb on + strandat 227.143 kb on + strandat 227.143 kb on + strandat 227.144 kb on - strandat 227.144 kb on - strandat 227.259 kb on + strandat 227.259 kb on + strandat 227.259 kb on + strandat 227.259 kb on + strandat 227.260 kb on - strandat 227.260 kb on - strandat 227.260 kb on - strandat 227.275 kb on + strandat 227.275 kb on + strandat 227.275 kb on + strandat 227.276 kb on - strandat 227.276 kb on - strandat 227.276 kb on - strandat 227.276 kb on - strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.421 kb on - strandat 227.421 kb on - strandat 227.421 kb on - strandat 227.421 kb on - strandat 227.421 kb on - strandat 227.469 kb on + strandat 227.940 kb on + strand, within MPMX19_06951at 228.624 kb on + strandat 228.624 kb on + strandat 228.624 kb on + strandat 228.624 kb on + strandat 228.625 kb on - strandat 228.625 kb on - strandat 228.625 kb on - strandat 228.625 kb on - strandat 228.625 kb on - strandat 228.625 kb on - strandat 228.625 kb on - strandat 228.625 kb on - strandat 228.625 kb on - strandat 228.625 kb on - strandat 228.676 kb on + strandat 228.677 kb on - strandat 228.871 kb on - strand, within MPMX19_06952at 228.871 kb on - strand, within MPMX19_06952at 228.871 kb on - strand, within MPMX19_06952at 228.871 kb on - strand, within MPMX19_06952at 228.871 kb on - strand, within MPMX19_06952at 228.871 kb on - strand, within MPMX19_06952at 228.871 kb on - strand, within MPMX19_06952at 228.871 kb on - strand, within MPMX19_06952at 228.871 kb on - strand, within MPMX19_06952at 228.871 kb on - strand, within MPMX19_06952at 229.534 kb on + strand, within MPMX19_06952

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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226,477 + MPMX19_06950 0.16 +1.5
226,478 - MPMX19_06950 0.16 +1.2
226,478 - MPMX19_06950 0.16 -0.8
226,478 - MPMX19_06950 0.16 -0.8
226,478 - MPMX19_06950 0.16 +0.2
226,639 + MPMX19_06950 0.34 -1.5
226,639 + MPMX19_06950 0.34 -0.1
226,639 + MPMX19_06950 0.34 -0.9
226,639 + MPMX19_06950 0.34 +0.1
226,639 + MPMX19_06950 0.34 -1.0
226,640 - MPMX19_06950 0.34 -2.3
226,640 - MPMX19_06950 0.34 +0.5
226,640 - MPMX19_06950 0.34 +1.1
226,640 - MPMX19_06950 0.34 +0.0
226,640 - MPMX19_06950 0.34 +0.0
226,640 - MPMX19_06950 0.34 +0.1
226,640 - MPMX19_06950 0.34 +0.3
227,020 + MPMX19_06950 0.77 +1.4
227,021 - MPMX19_06950 0.77 -1.3
227,143 + -0.6
227,143 + -0.7
227,143 + -0.0
227,144 - -0.9
227,144 - -0.3
227,259 + -0.6
227,259 + -0.1
227,259 + -1.5
227,259 + +0.3
227,260 - -1.1
227,260 - +0.8
227,260 - +0.5
227,275 + -0.3
227,275 + +0.4
227,275 + +0.5
227,276 - -0.8
227,276 - -1.3
227,276 - +1.0
227,276 - +0.5
227,420 + -0.7
227,420 + -0.2
227,420 + -1.1
227,420 + -1.1
227,420 + +0.7
227,420 + -2.1
227,420 + +0.3
227,421 - -1.6
227,421 - -0.5
227,421 - +0.2
227,421 - -0.3
227,421 - -1.3
227,469 + +0.1
227,940 + MPMX19_06951 0.43 -1.3
228,624 + +2.3
228,624 + -0.4
228,624 + +0.5
228,624 + -0.0
228,625 - -1.6
228,625 - +0.2
228,625 - +0.5
228,625 - +0.4
228,625 - -1.1
228,625 - +1.3
228,625 - -0.5
228,625 - +0.2
228,625 - +0.5
228,625 - -1.9
228,676 + -0.1
228,677 - -0.3
228,871 - MPMX19_06952 0.18 -0.3
228,871 - MPMX19_06952 0.18 -0.6
228,871 - MPMX19_06952 0.18 -0.7
228,871 - MPMX19_06952 0.18 +0.2
228,871 - MPMX19_06952 0.18 -0.9
228,871 - MPMX19_06952 0.18 -2.4
228,871 - MPMX19_06952 0.18 -1.5
228,871 - MPMX19_06952 0.18 -0.1
228,871 - MPMX19_06952 0.18 -2.6
228,871 - MPMX19_06952 0.18 -1.2
229,534 + MPMX19_06952 0.89 -0.8

Or see this region's nucleotide sequence