Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06949

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06948 and MPMX19_06949 overlap by 4 nucleotidesMPMX19_06949 and MPMX19_06950 are separated by 97 nucleotides MPMX19_06948: MPMX19_06948 - Peptidyl-lysine N-acetyltransferase Pat, at 222,895 to 225,072 _06948 MPMX19_06949: MPMX19_06949 - Acryloyl-CoA reductase (NADH), at 225,069 to 226,232 _06949 MPMX19_06950: MPMX19_06950 - Glycine cleavage system transcriptional activator, at 226,330 to 227,229 _06950 Position (kb) 225 226 227Strain fitness (log2 ratio) -2 -1 0 1 2at 224.309 kb on + strand, within MPMX19_06948at 224.309 kb on + strand, within MPMX19_06948at 224.310 kb on - strand, within MPMX19_06948at 224.310 kb on - strand, within MPMX19_06948at 224.310 kb on - strand, within MPMX19_06948at 224.310 kb on - strand, within MPMX19_06948at 224.400 kb on - strand, within MPMX19_06948at 224.672 kb on + strand, within MPMX19_06948at 224.673 kb on - strand, within MPMX19_06948at 224.788 kb on + strand, within MPMX19_06948at 224.788 kb on + strand, within MPMX19_06948at 224.912 kb on + strandat 224.912 kb on + strandat 224.913 kb on - strandat 224.913 kb on - strandat 224.928 kb on - strandat 225.197 kb on - strand, within MPMX19_06949at 225.197 kb on - strand, within MPMX19_06949at 225.197 kb on - strand, within MPMX19_06949at 225.218 kb on + strand, within MPMX19_06949at 225.218 kb on + strand, within MPMX19_06949at 225.218 kb on + strand, within MPMX19_06949at 225.219 kb on - strand, within MPMX19_06949at 225.220 kb on + strand, within MPMX19_06949at 225.220 kb on + strand, within MPMX19_06949at 225.220 kb on + strand, within MPMX19_06949at 225.221 kb on - strand, within MPMX19_06949at 225.221 kb on - strand, within MPMX19_06949at 225.221 kb on - strand, within MPMX19_06949at 225.307 kb on + strand, within MPMX19_06949at 225.308 kb on - strand, within MPMX19_06949at 225.308 kb on - strand, within MPMX19_06949at 225.350 kb on - strand, within MPMX19_06949at 225.585 kb on - strand, within MPMX19_06949at 225.585 kb on - strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.608 kb on - strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.932 kb on - strand, within MPMX19_06949at 226.316 kb on + strandat 226.316 kb on + strandat 226.316 kb on + strandat 226.316 kb on + strandat 226.316 kb on + strandat 226.317 kb on - strandat 226.317 kb on - strandat 226.317 kb on - strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.319 kb on - strandat 226.319 kb on - strandat 226.319 kb on - strandat 226.319 kb on - strandat 226.319 kb on - strandat 226.319 kb on - strandat 226.324 kb on + strandat 226.324 kb on + strandat 226.325 kb on - strandat 226.328 kb on + strandat 226.328 kb on + strandat 226.328 kb on + strandat 226.328 kb on + strandat 226.328 kb on + strandat 226.328 kb on + strandat 226.329 kb on - strandat 226.329 kb on - strandat 226.477 kb on + strand, within MPMX19_06950at 226.478 kb on - strand, within MPMX19_06950at 226.478 kb on - strand, within MPMX19_06950at 226.478 kb on - strand, within MPMX19_06950at 226.478 kb on - strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 227.020 kb on + strand, within MPMX19_06950at 227.021 kb on - strand, within MPMX19_06950at 227.143 kb on + strandat 227.143 kb on + strandat 227.143 kb on + strandat 227.144 kb on - strandat 227.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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224,309 + MPMX19_06948 0.65 +0.3
224,309 + MPMX19_06948 0.65 -1.4
224,310 - MPMX19_06948 0.65 -0.2
224,310 - MPMX19_06948 0.65 +0.5
224,310 - MPMX19_06948 0.65 +0.2
224,310 - MPMX19_06948 0.65 +1.2
224,400 - MPMX19_06948 0.69 +0.5
224,672 + MPMX19_06948 0.82 +0.5
224,673 - MPMX19_06948 0.82 -2.5
224,788 + MPMX19_06948 0.87 -0.1
224,788 + MPMX19_06948 0.87 -0.8
224,912 + -0.9
224,912 + -0.1
224,913 - -0.1
224,913 - -0.0
224,928 - -0.7
225,197 - MPMX19_06949 0.11 -1.0
225,197 - MPMX19_06949 0.11 +1.0
225,197 - MPMX19_06949 0.11 -0.1
225,218 + MPMX19_06949 0.13 +0.1
225,218 + MPMX19_06949 0.13 -0.1
225,218 + MPMX19_06949 0.13 +0.2
225,219 - MPMX19_06949 0.13 -0.2
225,220 + MPMX19_06949 0.13 +0.8
225,220 + MPMX19_06949 0.13 +0.2
225,220 + MPMX19_06949 0.13 -1.5
225,221 - MPMX19_06949 0.13 +0.5
225,221 - MPMX19_06949 0.13 -0.3
225,221 - MPMX19_06949 0.13 -1.5
225,307 + MPMX19_06949 0.20 -0.4
225,308 - MPMX19_06949 0.21 +0.0
225,308 - MPMX19_06949 0.21 +0.2
225,350 - MPMX19_06949 0.24 -0.1
225,585 - MPMX19_06949 0.44 +0.7
225,585 - MPMX19_06949 0.44 -0.7
225,607 + MPMX19_06949 0.46 +0.5
225,607 + MPMX19_06949 0.46 +0.9
225,607 + MPMX19_06949 0.46 -0.1
225,607 + MPMX19_06949 0.46 +0.1
225,608 - MPMX19_06949 0.46 +0.2
225,727 + MPMX19_06949 0.57 -1.1
225,727 + MPMX19_06949 0.57 +0.3
225,727 + MPMX19_06949 0.57 -2.2
225,727 + MPMX19_06949 0.57 -0.8
225,727 + MPMX19_06949 0.57 -0.3
225,727 + MPMX19_06949 0.57 +0.1
225,727 + MPMX19_06949 0.57 -0.7
225,727 + MPMX19_06949 0.57 +0.5
225,727 + MPMX19_06949 0.57 -0.9
225,727 + MPMX19_06949 0.57 -0.5
225,727 + MPMX19_06949 0.57 -0.1
225,727 + MPMX19_06949 0.57 -0.1
225,727 + MPMX19_06949 0.57 -1.8
225,728 - MPMX19_06949 0.57 -0.2
225,728 - MPMX19_06949 0.57 -0.9
225,728 - MPMX19_06949 0.57 +0.3
225,728 - MPMX19_06949 0.57 +0.3
225,728 - MPMX19_06949 0.57 +0.7
225,728 - MPMX19_06949 0.57 +1.2
225,728 - MPMX19_06949 0.57 -0.1
225,728 - MPMX19_06949 0.57 +0.3
225,728 - MPMX19_06949 0.57 +1.3
225,728 - MPMX19_06949 0.57 -0.1
225,790 + MPMX19_06949 0.62 +1.0
225,790 + MPMX19_06949 0.62 +1.0
225,790 + MPMX19_06949 0.62 +2.5
225,790 + MPMX19_06949 0.62 -1.5
225,790 + MPMX19_06949 0.62 +1.5
225,790 + MPMX19_06949 0.62 +1.2
225,790 + MPMX19_06949 0.62 -0.5
225,791 - MPMX19_06949 0.62 -0.3
225,791 - MPMX19_06949 0.62 -0.5
225,791 - MPMX19_06949 0.62 -1.6
225,791 - MPMX19_06949 0.62 +0.7
225,791 - MPMX19_06949 0.62 +0.1
225,791 - MPMX19_06949 0.62 -0.3
225,791 - MPMX19_06949 0.62 +0.3
225,932 - MPMX19_06949 0.74 -0.5
226,316 + +0.4
226,316 + -1.4
226,316 + -1.1
226,316 + -0.3
226,316 + -0.5
226,317 - -0.4
226,317 - -0.7
226,317 - -1.1
226,318 + +0.1
226,318 + -1.1
226,318 + +0.5
226,318 + -0.3
226,318 + -0.1
226,318 + +1.5
226,318 + -0.6
226,318 + -0.3
226,318 + -1.3
226,318 + -1.0
226,319 - +0.8
226,319 - -1.8
226,319 - +1.2
226,319 - -0.7
226,319 - -0.5
226,319 - +0.8
226,324 + -0.6
226,324 + +0.8
226,325 - +0.3
226,328 + -0.5
226,328 + +0.5
226,328 + -1.6
226,328 + +0.3
226,328 + -0.5
226,328 + -1.3
226,329 - -0.1
226,329 - +0.5
226,477 + MPMX19_06950 0.16 +1.5
226,478 - MPMX19_06950 0.16 +1.2
226,478 - MPMX19_06950 0.16 -0.8
226,478 - MPMX19_06950 0.16 -0.8
226,478 - MPMX19_06950 0.16 +0.2
226,639 + MPMX19_06950 0.34 -1.5
226,639 + MPMX19_06950 0.34 -0.1
226,639 + MPMX19_06950 0.34 -0.9
226,639 + MPMX19_06950 0.34 +0.1
226,639 + MPMX19_06950 0.34 -1.0
226,640 - MPMX19_06950 0.34 -2.3
226,640 - MPMX19_06950 0.34 +0.5
226,640 - MPMX19_06950 0.34 +1.1
226,640 - MPMX19_06950 0.34 +0.0
226,640 - MPMX19_06950 0.34 +0.0
226,640 - MPMX19_06950 0.34 +0.1
226,640 - MPMX19_06950 0.34 +0.3
227,020 + MPMX19_06950 0.77 +1.4
227,021 - MPMX19_06950 0.77 -1.3
227,143 + -0.6
227,143 + -0.7
227,143 + -0.0
227,144 - -0.9
227,144 - -0.3

Or see this region's nucleotide sequence