Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06942

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06941 and MPMX19_06942 overlap by 4 nucleotidesMPMX19_06942 and MPMX19_06943 are separated by 86 nucleotides MPMX19_06941: MPMX19_06941 - putative acyl-CoA dehydrogenase fadE25, at 213,937 to 215,103 _06941 MPMX19_06942: MPMX19_06942 - Long-chain-fatty-acid--CoA ligase, at 215,100 to 216,626 _06942 MPMX19_06943: MPMX19_06943 - Alpha-ketoglutaric semialdehyde dehydrogenase 1, at 216,713 to 218,158 _06943 Position (kb) 215 216 217Strain fitness (log2 ratio) -2 -1 0 1 2at 214.123 kb on + strand, within MPMX19_06941at 214.124 kb on - strand, within MPMX19_06941at 214.124 kb on - strand, within MPMX19_06941at 214.180 kb on + strand, within MPMX19_06941at 214.181 kb on - strand, within MPMX19_06941at 214.181 kb on - strand, within MPMX19_06941at 214.309 kb on + strand, within MPMX19_06941at 214.309 kb on + strand, within MPMX19_06941at 214.309 kb on + strand, within MPMX19_06941at 214.310 kb on - strand, within MPMX19_06941at 214.438 kb on + strand, within MPMX19_06941at 214.439 kb on - strand, within MPMX19_06941at 214.439 kb on - strand, within MPMX19_06941at 214.654 kb on + strand, within MPMX19_06941at 214.654 kb on + strand, within MPMX19_06941at 214.654 kb on + strand, within MPMX19_06941at 214.655 kb on - strand, within MPMX19_06941at 214.783 kb on + strand, within MPMX19_06941at 214.784 kb on - strand, within MPMX19_06941at 214.831 kb on + strand, within MPMX19_06941at 214.831 kb on + strand, within MPMX19_06941at 214.831 kb on + strand, within MPMX19_06941at 214.831 kb on + strand, within MPMX19_06941at 214.832 kb on - strand, within MPMX19_06941at 214.832 kb on - strand, within MPMX19_06941at 214.832 kb on - strand, within MPMX19_06941at 214.832 kb on - strand, within MPMX19_06941at 214.955 kb on - strand, within MPMX19_06941at 214.987 kb on + strandat 215.008 kb on + strandat 215.008 kb on + strandat 215.118 kb on + strandat 215.119 kb on - strandat 215.119 kb on - strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.182 kb on - strandat 215.182 kb on - strandat 215.182 kb on - strandat 215.182 kb on - strandat 215.182 kb on - strandat 215.371 kb on - strand, within MPMX19_06942at 215.371 kb on - strand, within MPMX19_06942at 215.371 kb on - strand, within MPMX19_06942at 215.371 kb on - strand, within MPMX19_06942at 215.550 kb on + strand, within MPMX19_06942at 215.550 kb on + strand, within MPMX19_06942at 215.550 kb on + strand, within MPMX19_06942at 215.550 kb on + strand, within MPMX19_06942at 215.550 kb on + strand, within MPMX19_06942at 215.550 kb on + strand, within MPMX19_06942at 215.551 kb on - strand, within MPMX19_06942at 215.551 kb on - strand, within MPMX19_06942at 215.551 kb on - strand, within MPMX19_06942at 215.551 kb on - strand, within MPMX19_06942at 215.551 kb on - strand, within MPMX19_06942at 215.604 kb on + strand, within MPMX19_06942at 215.604 kb on + strand, within MPMX19_06942at 215.604 kb on + strand, within MPMX19_06942at 215.605 kb on - strand, within MPMX19_06942at 215.624 kb on + strand, within MPMX19_06942at 215.624 kb on + strand, within MPMX19_06942at 215.624 kb on + strand, within MPMX19_06942at 215.625 kb on - strand, within MPMX19_06942at 215.625 kb on - strand, within MPMX19_06942at 215.625 kb on - strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.814 kb on + strand, within MPMX19_06942at 215.814 kb on + strand, within MPMX19_06942at 215.814 kb on + strand, within MPMX19_06942at 215.814 kb on + strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.961 kb on + strand, within MPMX19_06942at 215.962 kb on - strand, within MPMX19_06942at 216.591 kb on - strandat 216.915 kb on + strand, within MPMX19_06943at 216.915 kb on + strand, within MPMX19_06943at 216.915 kb on + strand, within MPMX19_06943at 216.915 kb on + strand, within MPMX19_06943at 216.915 kb on + strand, within MPMX19_06943at 216.915 kb on + strand, within MPMX19_06943at 216.915 kb on + strand, within MPMX19_06943at 216.916 kb on - strand, within MPMX19_06943at 216.916 kb on - strand, within MPMX19_06943at 216.916 kb on - strand, within MPMX19_06943at 216.916 kb on - strand, within MPMX19_06943at 216.916 kb on - strand, within MPMX19_06943at 217.062 kb on + strand, within MPMX19_06943at 217.063 kb on - strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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214,123 + MPMX19_06941 0.16 -0.6
214,124 - MPMX19_06941 0.16 +0.0
214,124 - MPMX19_06941 0.16 -0.1
214,180 + MPMX19_06941 0.21 -0.2
214,181 - MPMX19_06941 0.21 +0.5
214,181 - MPMX19_06941 0.21 -1.9
214,309 + MPMX19_06941 0.32 +0.7
214,309 + MPMX19_06941 0.32 +0.1
214,309 + MPMX19_06941 0.32 +0.5
214,310 - MPMX19_06941 0.32 -0.4
214,438 + MPMX19_06941 0.43 -1.6
214,439 - MPMX19_06941 0.43 -0.6
214,439 - MPMX19_06941 0.43 -0.7
214,654 + MPMX19_06941 0.61 +0.7
214,654 + MPMX19_06941 0.61 +0.5
214,654 + MPMX19_06941 0.61 -0.9
214,655 - MPMX19_06941 0.62 +0.6
214,783 + MPMX19_06941 0.72 -0.5
214,784 - MPMX19_06941 0.73 -0.3
214,831 + MPMX19_06941 0.77 +0.9
214,831 + MPMX19_06941 0.77 +0.4
214,831 + MPMX19_06941 0.77 +0.1
214,831 + MPMX19_06941 0.77 +0.6
214,832 - MPMX19_06941 0.77 -1.2
214,832 - MPMX19_06941 0.77 -0.0
214,832 - MPMX19_06941 0.77 -0.6
214,832 - MPMX19_06941 0.77 -1.6
214,955 - MPMX19_06941 0.87 -1.3
214,987 + -2.1
215,008 + +1.5
215,008 + +0.4
215,118 + -0.1
215,119 - -0.5
215,119 - -0.5
215,181 + +0.5
215,181 + +0.0
215,181 + -0.6
215,181 + +0.5
215,181 + -0.3
215,181 + +0.2
215,181 + +0.7
215,181 + -0.4
215,182 - -0.4
215,182 - -1.1
215,182 - -0.9
215,182 - -0.4
215,182 - -1.0
215,371 - MPMX19_06942 0.18 +1.1
215,371 - MPMX19_06942 0.18 +0.1
215,371 - MPMX19_06942 0.18 -0.4
215,371 - MPMX19_06942 0.18 +0.2
215,550 + MPMX19_06942 0.29 +0.7
215,550 + MPMX19_06942 0.29 -1.3
215,550 + MPMX19_06942 0.29 +0.8
215,550 + MPMX19_06942 0.29 -1.9
215,550 + MPMX19_06942 0.29 +0.3
215,550 + MPMX19_06942 0.29 +0.5
215,551 - MPMX19_06942 0.30 -0.9
215,551 - MPMX19_06942 0.30 +0.1
215,551 - MPMX19_06942 0.30 +0.9
215,551 - MPMX19_06942 0.30 +0.5
215,551 - MPMX19_06942 0.30 +0.9
215,604 + MPMX19_06942 0.33 +0.8
215,604 + MPMX19_06942 0.33 -0.1
215,604 + MPMX19_06942 0.33 -0.2
215,605 - MPMX19_06942 0.33 -0.5
215,624 + MPMX19_06942 0.34 -1.5
215,624 + MPMX19_06942 0.34 +0.8
215,624 + MPMX19_06942 0.34 -0.8
215,625 - MPMX19_06942 0.34 -0.6
215,625 - MPMX19_06942 0.34 -0.3
215,625 - MPMX19_06942 0.34 +1.5
215,703 + MPMX19_06942 0.39 +1.1
215,703 + MPMX19_06942 0.39 +0.0
215,703 + MPMX19_06942 0.39 -0.3
215,703 + MPMX19_06942 0.39 +0.9
215,703 + MPMX19_06942 0.39 -1.1
215,703 + MPMX19_06942 0.39 +0.4
215,703 + MPMX19_06942 0.39 -1.1
215,704 - MPMX19_06942 0.40 -0.4
215,704 - MPMX19_06942 0.40 +0.4
215,704 - MPMX19_06942 0.40 +0.4
215,704 - MPMX19_06942 0.40 +2.0
215,704 - MPMX19_06942 0.40 -0.2
215,704 - MPMX19_06942 0.40 -0.3
215,704 - MPMX19_06942 0.40 +0.3
215,704 - MPMX19_06942 0.40 +0.5
215,704 - MPMX19_06942 0.40 +0.2
215,704 - MPMX19_06942 0.40 +0.6
215,704 - MPMX19_06942 0.40 +0.4
215,704 - MPMX19_06942 0.40 +0.7
215,814 + MPMX19_06942 0.47 -1.3
215,814 + MPMX19_06942 0.47 -0.2
215,814 + MPMX19_06942 0.47 -1.3
215,814 + MPMX19_06942 0.47 +1.7
215,815 - MPMX19_06942 0.47 +0.9
215,815 - MPMX19_06942 0.47 +0.2
215,815 - MPMX19_06942 0.47 +0.9
215,815 - MPMX19_06942 0.47 -0.7
215,815 - MPMX19_06942 0.47 -0.2
215,961 + MPMX19_06942 0.56 -0.9
215,962 - MPMX19_06942 0.56 -1.8
216,591 - -0.1
216,915 + MPMX19_06943 0.14 -0.7
216,915 + MPMX19_06943 0.14 -0.3
216,915 + MPMX19_06943 0.14 -0.3
216,915 + MPMX19_06943 0.14 -0.7
216,915 + MPMX19_06943 0.14 -0.5
216,915 + MPMX19_06943 0.14 -1.1
216,915 + MPMX19_06943 0.14 +0.8
216,916 - MPMX19_06943 0.14 +0.5
216,916 - MPMX19_06943 0.14 -0.7
216,916 - MPMX19_06943 0.14 +1.2
216,916 - MPMX19_06943 0.14 -0.7
216,916 - MPMX19_06943 0.14 +0.9
217,062 + MPMX19_06943 0.24 -0.5
217,063 - MPMX19_06943 0.24 -0.5
217,278 + MPMX19_06943 0.39 +1.3
217,278 + MPMX19_06943 0.39 +0.9
217,278 + MPMX19_06943 0.39 -0.2
217,278 + MPMX19_06943 0.39 -0.1
217,278 + MPMX19_06943 0.39 -0.9
217,278 + MPMX19_06943 0.39 -0.6
217,278 + MPMX19_06943 0.39 +0.5
217,278 + MPMX19_06943 0.39 -0.6
217,278 + MPMX19_06943 0.39 -1.5
217,278 + MPMX19_06943 0.39 -0.1
217,278 + MPMX19_06943 0.39 +1.2
217,278 + MPMX19_06943 0.39 -0.2
217,278 + MPMX19_06943 0.39 -0.9
217,278 + MPMX19_06943 0.39 -0.6
217,278 + MPMX19_06943 0.39 +0.4
217,278 + MPMX19_06943 0.39 -0.0
217,279 - MPMX19_06943 0.39 +0.3
217,279 - MPMX19_06943 0.39 +0.2
217,279 - MPMX19_06943 0.39 -1.8
217,279 - MPMX19_06943 0.39 +0.1
217,279 - MPMX19_06943 0.39 +0.7
217,279 - MPMX19_06943 0.39 -0.6
217,279 - MPMX19_06943 0.39 -0.4
217,279 - MPMX19_06943 0.39 +0.2
217,279 - MPMX19_06943 0.39 -0.2
217,279 - MPMX19_06943 0.39 -1.5
217,279 - MPMX19_06943 0.39 -0.2
217,279 - MPMX19_06943 0.39 -0.5
217,279 - MPMX19_06943 0.39 -0.8

Or see this region's nucleotide sequence