Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06940

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06939 and MPMX19_06940 are separated by 4 nucleotidesMPMX19_06940 and MPMX19_06941 are separated by 206 nucleotides MPMX19_06939: MPMX19_06939 - S-(hydroxymethyl)glutathione dehydrogenase, at 211,759 to 212,889 _06939 MPMX19_06940: MPMX19_06940 - Ectoine dioxygenase, at 212,894 to 213,730 _06940 MPMX19_06941: MPMX19_06941 - putative acyl-CoA dehydrogenase fadE25, at 213,937 to 215,103 _06941 Position (kb) 212 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 211.899 kb on - strand, within MPMX19_06939at 211.899 kb on - strand, within MPMX19_06939at 212.450 kb on + strand, within MPMX19_06939at 212.450 kb on + strand, within MPMX19_06939at 212.451 kb on - strand, within MPMX19_06939at 212.594 kb on + strand, within MPMX19_06939at 212.594 kb on + strand, within MPMX19_06939at 212.595 kb on - strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.895 kb on + strandat 212.895 kb on + strandat 212.895 kb on + strandat 212.895 kb on + strandat 212.896 kb on - strandat 213.048 kb on + strand, within MPMX19_06940at 213.048 kb on + strand, within MPMX19_06940at 213.049 kb on - strand, within MPMX19_06940at 213.049 kb on - strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.286 kb on - strand, within MPMX19_06940at 213.286 kb on - strand, within MPMX19_06940at 213.286 kb on - strand, within MPMX19_06940at 213.378 kb on + strand, within MPMX19_06940at 213.378 kb on + strand, within MPMX19_06940at 213.378 kb on + strand, within MPMX19_06940at 213.378 kb on + strand, within MPMX19_06940at 213.379 kb on - strand, within MPMX19_06940at 213.379 kb on - strand, within MPMX19_06940at 213.379 kb on - strand, within MPMX19_06940at 213.441 kb on + strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.447 kb on + strand, within MPMX19_06940at 213.447 kb on + strand, within MPMX19_06940at 213.447 kb on + strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.684 kb on + strandat 213.684 kb on + strandat 213.685 kb on - strandat 213.700 kb on - strandat 213.793 kb on + strandat 213.793 kb on + strandat 213.801 kb on + strandat 213.950 kb on + strandat 213.950 kb on + strandat 213.951 kb on - strandat 214.096 kb on + strand, within MPMX19_06941at 214.096 kb on + strand, within MPMX19_06941at 214.097 kb on - strand, within MPMX19_06941at 214.097 kb on - strand, within MPMX19_06941at 214.097 kb on - strand, within MPMX19_06941at 214.097 kb on - strand, within MPMX19_06941at 214.097 kb on - strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.099 kb on - strand, within MPMX19_06941at 214.099 kb on - strand, within MPMX19_06941at 214.123 kb on + strand, within MPMX19_06941at 214.124 kb on - strand, within MPMX19_06941at 214.124 kb on - strand, within MPMX19_06941at 214.180 kb on + strand, within MPMX19_06941at 214.181 kb on - strand, within MPMX19_06941at 214.181 kb on - strand, within MPMX19_06941at 214.309 kb on + strand, within MPMX19_06941at 214.309 kb on + strand, within MPMX19_06941at 214.309 kb on + strand, within MPMX19_06941at 214.310 kb on - strand, within MPMX19_06941at 214.438 kb on + strand, within MPMX19_06941at 214.439 kb on - strand, within MPMX19_06941at 214.439 kb on - strand, within MPMX19_06941at 214.654 kb on + strand, within MPMX19_06941at 214.654 kb on + strand, within MPMX19_06941at 214.654 kb on + strand, within MPMX19_06941at 214.655 kb on - strand, within MPMX19_06941

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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211,899 - MPMX19_06939 0.12 +0.7
211,899 - MPMX19_06939 0.12 -0.5
212,450 + MPMX19_06939 0.61 +1.0
212,450 + MPMX19_06939 0.61 -0.3
212,451 - MPMX19_06939 0.61 -1.1
212,594 + MPMX19_06939 0.74 -0.4
212,594 + MPMX19_06939 0.74 +0.1
212,595 - MPMX19_06939 0.74 -0.3
212,597 + MPMX19_06939 0.74 +0.6
212,597 + MPMX19_06939 0.74 -1.1
212,597 + MPMX19_06939 0.74 +0.7
212,597 + MPMX19_06939 0.74 -1.1
212,597 + MPMX19_06939 0.74 +0.2
212,597 + MPMX19_06939 0.74 -0.7
212,597 + MPMX19_06939 0.74 -0.8
212,597 + MPMX19_06939 0.74 -0.1
212,597 + MPMX19_06939 0.74 -0.8
212,597 + MPMX19_06939 0.74 +0.6
212,598 - MPMX19_06939 0.74 -0.4
212,598 - MPMX19_06939 0.74 -0.1
212,598 - MPMX19_06939 0.74 -0.1
212,598 - MPMX19_06939 0.74 -0.9
212,598 - MPMX19_06939 0.74 -0.3
212,598 - MPMX19_06939 0.74 -1.2
212,598 - MPMX19_06939 0.74 -1.6
212,598 - MPMX19_06939 0.74 -0.6
212,598 - MPMX19_06939 0.74 -0.3
212,618 + MPMX19_06939 0.76 -1.8
212,618 + MPMX19_06939 0.76 -0.8
212,618 + MPMX19_06939 0.76 -0.5
212,618 + MPMX19_06939 0.76 +0.9
212,618 + MPMX19_06939 0.76 +0.7
212,618 + MPMX19_06939 0.76 -1.1
212,618 + MPMX19_06939 0.76 -0.9
212,618 + MPMX19_06939 0.76 -1.5
212,618 + MPMX19_06939 0.76 +0.4
212,618 + MPMX19_06939 0.76 +0.5
212,618 + MPMX19_06939 0.76 +0.7
212,618 + MPMX19_06939 0.76 -1.6
212,618 + MPMX19_06939 0.76 -0.5
212,618 + MPMX19_06939 0.76 -0.8
212,618 + MPMX19_06939 0.76 -1.1
212,618 + MPMX19_06939 0.76 -0.4
212,618 + MPMX19_06939 0.76 -0.9
212,618 + MPMX19_06939 0.76 +0.0
212,618 + MPMX19_06939 0.76 -1.2
212,618 + MPMX19_06939 0.76 -0.6
212,618 + MPMX19_06939 0.76 -0.7
212,618 + MPMX19_06939 0.76 +0.4
212,618 + MPMX19_06939 0.76 -1.1
212,618 + MPMX19_06939 0.76 +0.5
212,618 + MPMX19_06939 0.76 +0.1
212,618 + MPMX19_06939 0.76 -1.1
212,618 + MPMX19_06939 0.76 -1.6
212,618 + MPMX19_06939 0.76 -0.6
212,619 - MPMX19_06939 0.76 -2.2
212,619 - MPMX19_06939 0.76 -0.1
212,619 - MPMX19_06939 0.76 -2.9
212,619 - MPMX19_06939 0.76 -0.8
212,619 - MPMX19_06939 0.76 -0.2
212,619 - MPMX19_06939 0.76 +0.4
212,619 - MPMX19_06939 0.76 -0.1
212,619 - MPMX19_06939 0.76 +0.3
212,619 - MPMX19_06939 0.76 +0.4
212,619 - MPMX19_06939 0.76 +0.9
212,619 - MPMX19_06939 0.76 +1.5
212,619 - MPMX19_06939 0.76 +0.1
212,619 - MPMX19_06939 0.76 +0.5
212,619 - MPMX19_06939 0.76 +0.2
212,619 - MPMX19_06939 0.76 -0.1
212,619 - MPMX19_06939 0.76 -1.9
212,619 - MPMX19_06939 0.76 -2.8
212,619 - MPMX19_06939 0.76 -0.4
212,619 - MPMX19_06939 0.76 -0.3
212,619 - MPMX19_06939 0.76 -0.2
212,619 - MPMX19_06939 0.76 +0.2
212,619 - MPMX19_06939 0.76 -1.5
212,619 - MPMX19_06939 0.76 +1.1
212,619 - MPMX19_06939 0.76 -0.7
212,619 - MPMX19_06939 0.76 -0.1
212,619 - MPMX19_06939 0.76 +0.1
212,619 - MPMX19_06939 0.76 +0.3
212,619 - MPMX19_06939 0.76 -0.2
212,619 - MPMX19_06939 0.76 +0.0
212,619 - MPMX19_06939 0.76 +0.7
212,895 + +0.3
212,895 + -1.3
212,895 + -0.8
212,895 + -1.8
212,896 - -0.8
213,048 + MPMX19_06940 0.18 -0.5
213,048 + MPMX19_06940 0.18 +0.2
213,049 - MPMX19_06940 0.19 -0.8
213,049 - MPMX19_06940 0.19 -1.6
213,057 + MPMX19_06940 0.19 +0.5
213,057 + MPMX19_06940 0.19 -0.5
213,057 + MPMX19_06940 0.19 +0.4
213,057 + MPMX19_06940 0.19 -0.6
213,057 + MPMX19_06940 0.19 -0.2
213,057 + MPMX19_06940 0.19 -0.9
213,057 + MPMX19_06940 0.19 -0.6
213,057 + MPMX19_06940 0.19 -0.2
213,057 + MPMX19_06940 0.19 -0.6
213,057 + MPMX19_06940 0.19 -0.5
213,057 + MPMX19_06940 0.19 +0.7
213,057 + MPMX19_06940 0.19 -0.1
213,057 + MPMX19_06940 0.19 -0.1
213,058 - MPMX19_06940 0.20 +1.3
213,058 - MPMX19_06940 0.20 -1.2
213,058 - MPMX19_06940 0.20 -0.8
213,058 - MPMX19_06940 0.20 -0.4
213,058 - MPMX19_06940 0.20 -1.2
213,058 - MPMX19_06940 0.20 -0.9
213,058 - MPMX19_06940 0.20 +1.0
213,058 - MPMX19_06940 0.20 -0.2
213,058 - MPMX19_06940 0.20 -0.3
213,058 - MPMX19_06940 0.20 -0.1
213,058 - MPMX19_06940 0.20 -1.5
213,058 - MPMX19_06940 0.20 -1.3
213,219 + MPMX19_06940 0.39 -0.1
213,219 + MPMX19_06940 0.39 +0.6
213,219 + MPMX19_06940 0.39 +0.5
213,219 + MPMX19_06940 0.39 -0.3
213,219 + MPMX19_06940 0.39 -2.1
213,219 + MPMX19_06940 0.39 +0.5
213,219 + MPMX19_06940 0.39 -0.8
213,219 + MPMX19_06940 0.39 -0.9
213,219 + MPMX19_06940 0.39 -0.3
213,219 + MPMX19_06940 0.39 -1.2
213,219 + MPMX19_06940 0.39 -2.3
213,220 - MPMX19_06940 0.39 -0.1
213,220 - MPMX19_06940 0.39 -0.1
213,220 - MPMX19_06940 0.39 +0.8
213,220 - MPMX19_06940 0.39 +0.2
213,220 - MPMX19_06940 0.39 -1.6
213,220 - MPMX19_06940 0.39 -0.5
213,220 - MPMX19_06940 0.39 -0.5
213,220 - MPMX19_06940 0.39 +0.4
213,220 - MPMX19_06940 0.39 -0.1
213,220 - MPMX19_06940 0.39 -1.9
213,220 - MPMX19_06940 0.39 +0.6
213,220 - MPMX19_06940 0.39 -1.9
213,220 - MPMX19_06940 0.39 -1.8
213,220 - MPMX19_06940 0.39 +0.5
213,285 + MPMX19_06940 0.47 -1.9
213,285 + MPMX19_06940 0.47 -0.3
213,285 + MPMX19_06940 0.47 -1.1
213,285 + MPMX19_06940 0.47 +0.7
213,285 + MPMX19_06940 0.47 +0.5
213,285 + MPMX19_06940 0.47 -2.7
213,285 + MPMX19_06940 0.47 +0.2
213,285 + MPMX19_06940 0.47 -0.4
213,286 - MPMX19_06940 0.47 -0.3
213,286 - MPMX19_06940 0.47 -0.9
213,286 - MPMX19_06940 0.47 -1.6
213,378 + MPMX19_06940 0.58 +0.6
213,378 + MPMX19_06940 0.58 +0.1
213,378 + MPMX19_06940 0.58 -0.4
213,378 + MPMX19_06940 0.58 -1.2
213,379 - MPMX19_06940 0.58 -0.3
213,379 - MPMX19_06940 0.58 -0.9
213,379 - MPMX19_06940 0.58 +1.7
213,441 + MPMX19_06940 0.65 -0.5
213,442 - MPMX19_06940 0.65 -2.3
213,442 - MPMX19_06940 0.65 -0.1
213,442 - MPMX19_06940 0.65 +0.3
213,442 - MPMX19_06940 0.65 +2.0
213,442 - MPMX19_06940 0.65 -0.3
213,447 + MPMX19_06940 0.66 -0.4
213,447 + MPMX19_06940 0.66 -1.6
213,447 + MPMX19_06940 0.66 -0.2
213,448 - MPMX19_06940 0.66 -0.7
213,448 - MPMX19_06940 0.66 +0.3
213,448 - MPMX19_06940 0.66 +0.1
213,448 - MPMX19_06940 0.66 -0.7
213,448 - MPMX19_06940 0.66 -0.1
213,448 - MPMX19_06940 0.66 -0.0
213,684 + -1.8
213,684 + -0.5
213,685 - +0.0
213,700 - +1.4
213,793 + -0.7
213,793 + +0.5
213,801 + -0.3
213,950 + +1.5
213,950 + +0.4
213,951 - -0.5
214,096 + MPMX19_06941 0.14 +0.1
214,096 + MPMX19_06941 0.14 -0.1
214,097 - MPMX19_06941 0.14 -0.2
214,097 - MPMX19_06941 0.14 -1.0
214,097 - MPMX19_06941 0.14 +1.7
214,097 - MPMX19_06941 0.14 -0.1
214,097 - MPMX19_06941 0.14 -0.6
214,098 + MPMX19_06941 0.14 -0.3
214,098 + MPMX19_06941 0.14 -0.3
214,098 + MPMX19_06941 0.14 +0.1
214,098 + MPMX19_06941 0.14 +0.1
214,098 + MPMX19_06941 0.14 +0.9
214,098 + MPMX19_06941 0.14 -1.3
214,098 + MPMX19_06941 0.14 +0.4
214,098 + MPMX19_06941 0.14 +0.4
214,098 + MPMX19_06941 0.14 +0.8
214,099 - MPMX19_06941 0.14 -1.1
214,099 - MPMX19_06941 0.14 +0.9
214,123 + MPMX19_06941 0.16 -0.6
214,124 - MPMX19_06941 0.16 +0.0
214,124 - MPMX19_06941 0.16 -0.1
214,180 + MPMX19_06941 0.21 -0.2
214,181 - MPMX19_06941 0.21 +0.5
214,181 - MPMX19_06941 0.21 -1.9
214,309 + MPMX19_06941 0.32 +0.7
214,309 + MPMX19_06941 0.32 +0.1
214,309 + MPMX19_06941 0.32 +0.5
214,310 - MPMX19_06941 0.32 -0.4
214,438 + MPMX19_06941 0.43 -1.6
214,439 - MPMX19_06941 0.43 -0.6
214,439 - MPMX19_06941 0.43 -0.7
214,654 + MPMX19_06941 0.61 +0.7
214,654 + MPMX19_06941 0.61 +0.5
214,654 + MPMX19_06941 0.61 -0.9
214,655 - MPMX19_06941 0.62 +0.6

Or see this region's nucleotide sequence