Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06920

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06918 and MPMX19_06919 overlap by 1 nucleotidesMPMX19_06919 and MPMX19_06920 overlap by 4 nucleotidesMPMX19_06920 and MPMX19_06921 are separated by 217 nucleotidesMPMX19_06921 and MPMX19_06922 overlap by 32 nucleotides MPMX19_06918: MPMX19_06918 - Esterase EstB, at 193,935 to 195,125 _06918 MPMX19_06919: MPMX19_06919 - hypothetical protein, at 195,125 to 195,322 _06919 MPMX19_06920: MPMX19_06920 - Purine ribonucleoside efflux pump NepI, at 195,319 to 196,527 _06920 MPMX19_06921: MPMX19_06921 - hypothetical protein, at 196,745 to 197,320 _06921 MPMX19_06922: MPMX19_06922 - hypothetical protein, at 197,289 to 197,678 _06922 Position (kb) 195 196 197Strain fitness (log2 ratio) -2 -1 0 1 2at 194.403 kb on - strand, within MPMX19_06918at 194.451 kb on + strand, within MPMX19_06918at 194.451 kb on + strand, within MPMX19_06918at 194.451 kb on + strand, within MPMX19_06918at 194.451 kb on + strand, within MPMX19_06918at 194.451 kb on + strand, within MPMX19_06918at 194.452 kb on - strand, within MPMX19_06918at 194.452 kb on - strand, within MPMX19_06918at 194.452 kb on - strand, within MPMX19_06918at 194.475 kb on + strand, within MPMX19_06918at 194.625 kb on + strand, within MPMX19_06918at 194.626 kb on - strand, within MPMX19_06918at 194.626 kb on - strand, within MPMX19_06918at 194.626 kb on - strand, within MPMX19_06918at 194.626 kb on - strand, within MPMX19_06918at 194.706 kb on + strand, within MPMX19_06918at 194.706 kb on + strand, within MPMX19_06918at 194.988 kb on + strand, within MPMX19_06918at 194.988 kb on + strand, within MPMX19_06918at 194.989 kb on - strand, within MPMX19_06918at 195.054 kb on + strandat 195.054 kb on + strandat 195.055 kb on - strandat 195.102 kb on + strandat 195.102 kb on + strandat 195.103 kb on - strandat 195.103 kb on - strandat 195.103 kb on - strandat 195.290 kb on - strand, within MPMX19_06919at 195.484 kb on + strand, within MPMX19_06920at 195.485 kb on - strand, within MPMX19_06920at 195.485 kb on - strand, within MPMX19_06920at 195.624 kb on + strand, within MPMX19_06920at 195.624 kb on + strand, within MPMX19_06920at 195.625 kb on - strand, within MPMX19_06920at 195.625 kb on - strand, within MPMX19_06920at 195.625 kb on - strand, within MPMX19_06920at 195.688 kb on + strand, within MPMX19_06920at 195.689 kb on - strand, within MPMX19_06920at 195.689 kb on - strand, within MPMX19_06920at 195.689 kb on - strand, within MPMX19_06920at 195.798 kb on + strand, within MPMX19_06920at 195.799 kb on - strand, within MPMX19_06920at 195.799 kb on - strand, within MPMX19_06920at 195.816 kb on + strand, within MPMX19_06920at 196.000 kb on + strand, within MPMX19_06920at 196.000 kb on + strand, within MPMX19_06920at 196.000 kb on + strand, within MPMX19_06920at 196.000 kb on + strand, within MPMX19_06920at 196.000 kb on + strand, within MPMX19_06920at 196.000 kb on + strand, within MPMX19_06920at 196.000 kb on + strand, within MPMX19_06920at 196.000 kb on + strand, within MPMX19_06920at 196.001 kb on - strand, within MPMX19_06920at 196.001 kb on - strand, within MPMX19_06920at 196.001 kb on - strand, within MPMX19_06920at 196.001 kb on - strand, within MPMX19_06920at 196.001 kb on - strand, within MPMX19_06920at 196.001 kb on - strand, within MPMX19_06920at 196.001 kb on - strand, within MPMX19_06920at 196.001 kb on - strand, within MPMX19_06920at 196.001 kb on - strand, within MPMX19_06920at 196.001 kb on - strand, within MPMX19_06920at 196.001 kb on - strand, within MPMX19_06920at 196.002 kb on + strand, within MPMX19_06920at 196.002 kb on + strand, within MPMX19_06920at 196.002 kb on + strand, within MPMX19_06920at 196.002 kb on + strand, within MPMX19_06920at 196.003 kb on - strand, within MPMX19_06920at 196.003 kb on - strand, within MPMX19_06920at 196.003 kb on - strand, within MPMX19_06920at 196.003 kb on - strand, within MPMX19_06920at 196.003 kb on - strand, within MPMX19_06920at 196.003 kb on - strand, within MPMX19_06920at 196.003 kb on - strand, within MPMX19_06920at 196.003 kb on - strand, within MPMX19_06920at 196.006 kb on + strand, within MPMX19_06920at 196.006 kb on + strand, within MPMX19_06920at 196.006 kb on + strand, within MPMX19_06920at 196.006 kb on + strand, within MPMX19_06920at 196.006 kb on + strand, within MPMX19_06920at 196.006 kb on + strand, within MPMX19_06920at 196.006 kb on + strand, within MPMX19_06920at 196.007 kb on - strand, within MPMX19_06920at 196.007 kb on - strand, within MPMX19_06920at 196.007 kb on - strand, within MPMX19_06920at 196.007 kb on - strand, within MPMX19_06920at 196.007 kb on - strand, within MPMX19_06920at 196.007 kb on - strand, within MPMX19_06920at 196.007 kb on - strand, within MPMX19_06920at 196.047 kb on + strand, within MPMX19_06920at 196.048 kb on - strand, within MPMX19_06920at 196.213 kb on + strand, within MPMX19_06920at 196.213 kb on + strand, within MPMX19_06920at 196.227 kb on + strand, within MPMX19_06920at 196.227 kb on + strand, within MPMX19_06920at 196.227 kb on + strand, within MPMX19_06920at 196.228 kb on - strand, within MPMX19_06920at 196.228 kb on - strand, within MPMX19_06920at 196.228 kb on - strand, within MPMX19_06920at 196.228 kb on - strand, within MPMX19_06920at 196.525 kb on + strandat 196.525 kb on + strandat 196.526 kb on - strandat 196.526 kb on - strandat 196.526 kb on - strandat 196.612 kb on - strandat 196.691 kb on + strandat 196.692 kb on - strandat 196.692 kb on - strandat 196.692 kb on - strandat 196.714 kb on + strandat 196.714 kb on + strandat 196.714 kb on + strandat 196.714 kb on + strandat 196.762 kb on - strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.853 kb on + strand, within MPMX19_06921at 196.853 kb on + strand, within MPMX19_06921at 196.854 kb on - strand, within MPMX19_06921at 196.854 kb on - strand, within MPMX19_06921at 196.854 kb on - strand, within MPMX19_06921at 196.904 kb on + strand, within MPMX19_06921at 197.051 kb on + strand, within MPMX19_06921at 197.051 kb on + strand, within MPMX19_06921at 197.052 kb on - strand, within MPMX19_06921at 197.127 kb on - strand, within MPMX19_06921at 197.163 kb on - strand, within MPMX19_06921at 197.163 kb on - strand, within MPMX19_06921at 197.163 kb on - strand, within MPMX19_06921at 197.163 kb on - strand, within MPMX19_06921at 197.163 kb on - strand, within MPMX19_06921at 197.163 kb on - strand, within MPMX19_06921at 197.288 kb on + strandat 197.318 kb on + strandat 197.318 kb on + strandat 197.318 kb on + strandat 197.319 kb on - strandat 197.319 kb on - strandat 197.319 kb on - strandat 197.319 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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194,403 - MPMX19_06918 0.39 +1.3
194,451 + MPMX19_06918 0.43 -0.8
194,451 + MPMX19_06918 0.43 +0.2
194,451 + MPMX19_06918 0.43 -0.6
194,451 + MPMX19_06918 0.43 +0.8
194,451 + MPMX19_06918 0.43 +0.5
194,452 - MPMX19_06918 0.43 -2.1
194,452 - MPMX19_06918 0.43 +0.5
194,452 - MPMX19_06918 0.43 +0.2
194,475 + MPMX19_06918 0.45 -0.1
194,625 + MPMX19_06918 0.58 +1.7
194,626 - MPMX19_06918 0.58 -1.1
194,626 - MPMX19_06918 0.58 -1.3
194,626 - MPMX19_06918 0.58 +0.7
194,626 - MPMX19_06918 0.58 +0.9
194,706 + MPMX19_06918 0.65 -1.1
194,706 + MPMX19_06918 0.65 -0.8
194,988 + MPMX19_06918 0.88 +1.5
194,988 + MPMX19_06918 0.88 +0.2
194,989 - MPMX19_06918 0.88 +0.3
195,054 + +0.8
195,054 + +0.1
195,055 - -0.4
195,102 + -0.9
195,102 + -0.3
195,103 - +0.2
195,103 - -1.1
195,103 - +1.2
195,290 - MPMX19_06919 0.83 -1.8
195,484 + MPMX19_06920 0.14 -0.6
195,485 - MPMX19_06920 0.14 +0.2
195,485 - MPMX19_06920 0.14 -1.0
195,624 + MPMX19_06920 0.25 -0.1
195,624 + MPMX19_06920 0.25 +0.2
195,625 - MPMX19_06920 0.25 -0.8
195,625 - MPMX19_06920 0.25 +0.3
195,625 - MPMX19_06920 0.25 -0.4
195,688 + MPMX19_06920 0.31 -0.0
195,689 - MPMX19_06920 0.31 -1.3
195,689 - MPMX19_06920 0.31 -0.2
195,689 - MPMX19_06920 0.31 +0.1
195,798 + MPMX19_06920 0.40 -0.8
195,799 - MPMX19_06920 0.40 -1.6
195,799 - MPMX19_06920 0.40 +0.7
195,816 + MPMX19_06920 0.41 +0.3
196,000 + MPMX19_06920 0.56 -1.6
196,000 + MPMX19_06920 0.56 +0.5
196,000 + MPMX19_06920 0.56 +1.3
196,000 + MPMX19_06920 0.56 +0.0
196,000 + MPMX19_06920 0.56 -0.8
196,000 + MPMX19_06920 0.56 +0.2
196,000 + MPMX19_06920 0.56 +0.1
196,000 + MPMX19_06920 0.56 -0.8
196,001 - MPMX19_06920 0.56 -0.3
196,001 - MPMX19_06920 0.56 -0.1
196,001 - MPMX19_06920 0.56 +0.2
196,001 - MPMX19_06920 0.56 -0.9
196,001 - MPMX19_06920 0.56 -1.1
196,001 - MPMX19_06920 0.56 -0.6
196,001 - MPMX19_06920 0.56 +0.7
196,001 - MPMX19_06920 0.56 -0.5
196,001 - MPMX19_06920 0.56 -0.5
196,001 - MPMX19_06920 0.56 -1.3
196,001 - MPMX19_06920 0.56 -0.3
196,002 + MPMX19_06920 0.56 -0.1
196,002 + MPMX19_06920 0.56 -1.5
196,002 + MPMX19_06920 0.56 +0.9
196,002 + MPMX19_06920 0.56 +0.4
196,003 - MPMX19_06920 0.57 -0.7
196,003 - MPMX19_06920 0.57 +0.7
196,003 - MPMX19_06920 0.57 +1.0
196,003 - MPMX19_06920 0.57 -0.8
196,003 - MPMX19_06920 0.57 -0.3
196,003 - MPMX19_06920 0.57 +0.3
196,003 - MPMX19_06920 0.57 +0.7
196,003 - MPMX19_06920 0.57 -0.6
196,006 + MPMX19_06920 0.57 -0.6
196,006 + MPMX19_06920 0.57 -0.4
196,006 + MPMX19_06920 0.57 -1.3
196,006 + MPMX19_06920 0.57 -1.3
196,006 + MPMX19_06920 0.57 -1.1
196,006 + MPMX19_06920 0.57 +0.4
196,006 + MPMX19_06920 0.57 -0.6
196,007 - MPMX19_06920 0.57 +0.4
196,007 - MPMX19_06920 0.57 -0.8
196,007 - MPMX19_06920 0.57 +1.1
196,007 - MPMX19_06920 0.57 +0.2
196,007 - MPMX19_06920 0.57 -1.2
196,007 - MPMX19_06920 0.57 +0.5
196,007 - MPMX19_06920 0.57 +0.6
196,047 + MPMX19_06920 0.60 -0.3
196,048 - MPMX19_06920 0.60 +0.7
196,213 + MPMX19_06920 0.74 -0.4
196,213 + MPMX19_06920 0.74 -2.3
196,227 + MPMX19_06920 0.75 -1.3
196,227 + MPMX19_06920 0.75 -0.9
196,227 + MPMX19_06920 0.75 -0.2
196,228 - MPMX19_06920 0.75 -0.6
196,228 - MPMX19_06920 0.75 -0.1
196,228 - MPMX19_06920 0.75 -1.5
196,228 - MPMX19_06920 0.75 +0.5
196,525 + +0.8
196,525 + +0.5
196,526 - -1.1
196,526 - +0.6
196,526 - -1.8
196,612 - -0.2
196,691 + -1.5
196,692 - -0.0
196,692 - -1.9
196,692 - -0.5
196,714 + -2.7
196,714 + -0.5
196,714 + +0.3
196,714 + -0.3
196,762 - +0.7
196,789 + -0.9
196,789 + +0.2
196,789 + +1.5
196,789 + -0.2
196,789 + -0.7
196,789 + -1.5
196,789 + +1.8
196,789 + +0.5
196,789 + +0.1
196,789 + -0.3
196,789 + +0.8
196,790 - -0.5
196,790 - -2.3
196,790 - -1.3
196,790 - -0.1
196,790 - +0.7
196,790 - -1.6
196,790 - -0.3
196,790 - -0.6
196,790 - -1.4
196,853 + MPMX19_06921 0.19 -1.1
196,853 + MPMX19_06921 0.19 -1.9
196,854 - MPMX19_06921 0.19 -0.3
196,854 - MPMX19_06921 0.19 +0.3
196,854 - MPMX19_06921 0.19 -0.3
196,904 + MPMX19_06921 0.28 -0.9
197,051 + MPMX19_06921 0.53 -0.3
197,051 + MPMX19_06921 0.53 -0.8
197,052 - MPMX19_06921 0.53 +0.4
197,127 - MPMX19_06921 0.66 +0.1
197,163 - MPMX19_06921 0.73 -0.5
197,163 - MPMX19_06921 0.73 +1.0
197,163 - MPMX19_06921 0.73 -0.7
197,163 - MPMX19_06921 0.73 +0.4
197,163 - MPMX19_06921 0.73 -1.2
197,163 - MPMX19_06921 0.73 -1.7
197,288 + +2.0
197,318 + +0.0
197,318 + -0.5
197,318 + -0.9
197,319 - -0.6
197,319 - +0.1
197,319 - -1.4
197,319 - -0.6

Or see this region's nucleotide sequence