Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06917 and MPMX19_06918 are separated by 115 nucleotides MPMX19_06918 and MPMX19_06919 overlap by 1 nucleotides MPMX19_06919 and MPMX19_06920 overlap by 4 nucleotides
MPMX19_06917: MPMX19_06917 - HTH-type transcriptional regulator PgrR, at 192,887 to 193,819
_06917
MPMX19_06918: MPMX19_06918 - Esterase EstB, at 193,935 to 195,125
_06918
MPMX19_06919: MPMX19_06919 - hypothetical protein, at 195,125 to 195,322
_06919
MPMX19_06920: MPMX19_06920 - Purine ribonucleoside efflux pump NepI, at 195,319 to 196,527
_06920
Position (kb) 193
194
195
196 Strain fitness (log2 ratio) -2
-1
0
1 at 193.107 kb on + strand, within MPMX19_06917 at 193.107 kb on + strand, within MPMX19_06917 at 193.108 kb on - strand, within MPMX19_06917 at 193.251 kb on + strand, within MPMX19_06917 at 193.251 kb on + strand, within MPMX19_06917 at 193.251 kb on + strand, within MPMX19_06917 at 193.314 kb on + strand, within MPMX19_06917 at 193.315 kb on - strand, within MPMX19_06917 at 193.467 kb on + strand, within MPMX19_06917 at 193.736 kb on + strand at 193.852 kb on + strand at 193.852 kb on + strand at 193.853 kb on - strand at 193.853 kb on - strand at 193.870 kb on + strand at 193.896 kb on + strand at 193.896 kb on + strand at 193.897 kb on - strand at 193.897 kb on - strand at 193.897 kb on - strand at 193.897 kb on - strand at 193.897 kb on - strand at 193.949 kb on - strand at 194.403 kb on - strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.452 kb on - strand, within MPMX19_06918 at 194.452 kb on - strand, within MPMX19_06918 at 194.452 kb on - strand, within MPMX19_06918 at 194.475 kb on + strand, within MPMX19_06918 at 194.625 kb on + strand, within MPMX19_06918 at 194.626 kb on - strand, within MPMX19_06918 at 194.626 kb on - strand, within MPMX19_06918 at 194.626 kb on - strand, within MPMX19_06918 at 194.626 kb on - strand, within MPMX19_06918 at 194.706 kb on + strand, within MPMX19_06918 at 194.706 kb on + strand, within MPMX19_06918 at 194.988 kb on + strand, within MPMX19_06918 at 194.988 kb on + strand, within MPMX19_06918 at 194.989 kb on - strand, within MPMX19_06918 at 195.054 kb on + strand at 195.054 kb on + strand at 195.055 kb on - strand at 195.102 kb on + strand at 195.102 kb on + strand at 195.103 kb on - strand at 195.103 kb on - strand at 195.103 kb on - strand at 195.290 kb on - strand, within MPMX19_06919 at 195.484 kb on + strand, within MPMX19_06920 at 195.485 kb on - strand, within MPMX19_06920 at 195.485 kb on - strand, within MPMX19_06920 at 195.624 kb on + strand, within MPMX19_06920 at 195.624 kb on + strand, within MPMX19_06920 at 195.625 kb on - strand, within MPMX19_06920 at 195.625 kb on - strand, within MPMX19_06920 at 195.625 kb on - strand, within MPMX19_06920 at 195.688 kb on + strand, within MPMX19_06920 at 195.689 kb on - strand, within MPMX19_06920 at 195.689 kb on - strand, within MPMX19_06920 at 195.689 kb on - strand, within MPMX19_06920 at 195.798 kb on + strand, within MPMX19_06920 at 195.799 kb on - strand, within MPMX19_06920 at 195.799 kb on - strand, within MPMX19_06920 at 195.816 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.047 kb on + strand, within MPMX19_06920 at 196.048 kb on - strand, within MPMX19_06920
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 193,107 + MPMX19_06917 0.24 +0.9 193,107 + MPMX19_06917 0.24 +0.1 193,108 - MPMX19_06917 0.24 -0.5 193,251 + MPMX19_06917 0.39 +0.9 193,251 + MPMX19_06917 0.39 +0.8 193,251 + MPMX19_06917 0.39 +0.4 193,314 + MPMX19_06917 0.46 -0.2 193,315 - MPMX19_06917 0.46 -0.1 193,467 + MPMX19_06917 0.62 +0.5 193,736 + +0.6 193,852 + -0.1 193,852 + +0.1 193,853 - +1.4 193,853 - -0.1 193,870 + +0.7 193,896 + -0.2 193,896 + -1.3 193,897 - +0.0 193,897 - +0.8 193,897 - -1.0 193,897 - +0.4 193,897 - +0.1 193,949 - +0.1 194,403 - MPMX19_06918 0.39 +1.3 194,451 + MPMX19_06918 0.43 -0.8 194,451 + MPMX19_06918 0.43 +0.2 194,451 + MPMX19_06918 0.43 -0.6 194,451 + MPMX19_06918 0.43 +0.8 194,451 + MPMX19_06918 0.43 +0.5 194,452 - MPMX19_06918 0.43 -2.1 194,452 - MPMX19_06918 0.43 +0.5 194,452 - MPMX19_06918 0.43 +0.2 194,475 + MPMX19_06918 0.45 -0.1 194,625 + MPMX19_06918 0.58 +1.7 194,626 - MPMX19_06918 0.58 -1.1 194,626 - MPMX19_06918 0.58 -1.3 194,626 - MPMX19_06918 0.58 +0.7 194,626 - MPMX19_06918 0.58 +0.9 194,706 + MPMX19_06918 0.65 -1.1 194,706 + MPMX19_06918 0.65 -0.8 194,988 + MPMX19_06918 0.88 +1.5 194,988 + MPMX19_06918 0.88 +0.2 194,989 - MPMX19_06918 0.88 +0.3 195,054 + +0.8 195,054 + +0.1 195,055 - -0.4 195,102 + -0.9 195,102 + -0.3 195,103 - +0.2 195,103 - -1.1 195,103 - +1.2 195,290 - MPMX19_06919 0.83 -1.8 195,484 + MPMX19_06920 0.14 -0.6 195,485 - MPMX19_06920 0.14 +0.2 195,485 - MPMX19_06920 0.14 -1.0 195,624 + MPMX19_06920 0.25 -0.1 195,624 + MPMX19_06920 0.25 +0.2 195,625 - MPMX19_06920 0.25 -0.8 195,625 - MPMX19_06920 0.25 +0.3 195,625 - MPMX19_06920 0.25 -0.4 195,688 + MPMX19_06920 0.31 -0.0 195,689 - MPMX19_06920 0.31 -1.3 195,689 - MPMX19_06920 0.31 -0.2 195,689 - MPMX19_06920 0.31 +0.1 195,798 + MPMX19_06920 0.40 -0.8 195,799 - MPMX19_06920 0.40 -1.6 195,799 - MPMX19_06920 0.40 +0.7 195,816 + MPMX19_06920 0.41 +0.3 196,000 + MPMX19_06920 0.56 -1.6 196,000 + MPMX19_06920 0.56 +0.5 196,000 + MPMX19_06920 0.56 +1.3 196,000 + MPMX19_06920 0.56 +0.0 196,000 + MPMX19_06920 0.56 -0.8 196,000 + MPMX19_06920 0.56 +0.2 196,000 + MPMX19_06920 0.56 +0.1 196,000 + MPMX19_06920 0.56 -0.8 196,001 - MPMX19_06920 0.56 -0.3 196,001 - MPMX19_06920 0.56 -0.1 196,001 - MPMX19_06920 0.56 +0.2 196,001 - MPMX19_06920 0.56 -0.9 196,001 - MPMX19_06920 0.56 -1.1 196,001 - MPMX19_06920 0.56 -0.6 196,001 - MPMX19_06920 0.56 +0.7 196,001 - MPMX19_06920 0.56 -0.5 196,001 - MPMX19_06920 0.56 -0.5 196,001 - MPMX19_06920 0.56 -1.3 196,001 - MPMX19_06920 0.56 -0.3 196,002 + MPMX19_06920 0.56 -0.1 196,002 + MPMX19_06920 0.56 -1.5 196,002 + MPMX19_06920 0.56 +0.9 196,002 + MPMX19_06920 0.56 +0.4 196,003 - MPMX19_06920 0.57 -0.7 196,003 - MPMX19_06920 0.57 +0.7 196,003 - MPMX19_06920 0.57 +1.0 196,003 - MPMX19_06920 0.57 -0.8 196,003 - MPMX19_06920 0.57 -0.3 196,003 - MPMX19_06920 0.57 +0.3 196,003 - MPMX19_06920 0.57 +0.7 196,003 - MPMX19_06920 0.57 -0.6 196,006 + MPMX19_06920 0.57 -0.6 196,006 + MPMX19_06920 0.57 -0.4 196,006 + MPMX19_06920 0.57 -1.3 196,006 + MPMX19_06920 0.57 -1.3 196,006 + MPMX19_06920 0.57 -1.1 196,006 + MPMX19_06920 0.57 +0.4 196,006 + MPMX19_06920 0.57 -0.6 196,007 - MPMX19_06920 0.57 +0.4 196,007 - MPMX19_06920 0.57 -0.8 196,007 - MPMX19_06920 0.57 +1.1 196,007 - MPMX19_06920 0.57 +0.2 196,007 - MPMX19_06920 0.57 -1.2 196,007 - MPMX19_06920 0.57 +0.5 196,007 - MPMX19_06920 0.57 +0.6 196,047 + MPMX19_06920 0.60 -0.3 196,048 - MPMX19_06920 0.60 +0.7
Or see this region's nucleotide sequence