Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06917

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06915 and MPMX19_06916 are separated by 50 nucleotidesMPMX19_06916 and MPMX19_06917 are separated by 141 nucleotidesMPMX19_06917 and MPMX19_06918 are separated by 115 nucleotides MPMX19_06915: MPMX19_06915 - Putative acyl-CoA dehydrogenase FadE17, at 190,752 to 191,894 _06915 MPMX19_06916: MPMX19_06916 - Crotonyl-CoA hydratase, at 191,945 to 192,745 _06916 MPMX19_06917: MPMX19_06917 - HTH-type transcriptional regulator PgrR, at 192,887 to 193,819 _06917 MPMX19_06918: MPMX19_06918 - Esterase EstB, at 193,935 to 195,125 _06918 Position (kb) 192 193 194Strain fitness (log2 ratio) -2 -1 0 1 2at 192.206 kb on + strand, within MPMX19_06916at 192.206 kb on + strand, within MPMX19_06916at 192.206 kb on + strand, within MPMX19_06916at 192.207 kb on - strand, within MPMX19_06916at 192.207 kb on - strand, within MPMX19_06916at 192.207 kb on - strand, within MPMX19_06916at 192.207 kb on - strand, within MPMX19_06916at 192.743 kb on + strandat 192.743 kb on + strandat 192.744 kb on - strandat 193.107 kb on + strand, within MPMX19_06917at 193.107 kb on + strand, within MPMX19_06917at 193.108 kb on - strand, within MPMX19_06917at 193.251 kb on + strand, within MPMX19_06917at 193.251 kb on + strand, within MPMX19_06917at 193.251 kb on + strand, within MPMX19_06917at 193.314 kb on + strand, within MPMX19_06917at 193.315 kb on - strand, within MPMX19_06917at 193.467 kb on + strand, within MPMX19_06917at 193.736 kb on + strandat 193.852 kb on + strandat 193.852 kb on + strandat 193.853 kb on - strandat 193.853 kb on - strandat 193.870 kb on + strandat 193.896 kb on + strandat 193.896 kb on + strandat 193.897 kb on - strandat 193.897 kb on - strandat 193.897 kb on - strandat 193.897 kb on - strandat 193.897 kb on - strandat 193.949 kb on - strandat 194.403 kb on - strand, within MPMX19_06918at 194.451 kb on + strand, within MPMX19_06918at 194.451 kb on + strand, within MPMX19_06918at 194.451 kb on + strand, within MPMX19_06918at 194.451 kb on + strand, within MPMX19_06918at 194.451 kb on + strand, within MPMX19_06918at 194.452 kb on - strand, within MPMX19_06918at 194.452 kb on - strand, within MPMX19_06918at 194.452 kb on - strand, within MPMX19_06918at 194.475 kb on + strand, within MPMX19_06918at 194.625 kb on + strand, within MPMX19_06918at 194.626 kb on - strand, within MPMX19_06918at 194.626 kb on - strand, within MPMX19_06918at 194.626 kb on - strand, within MPMX19_06918at 194.626 kb on - strand, within MPMX19_06918at 194.706 kb on + strand, within MPMX19_06918at 194.706 kb on + strand, within MPMX19_06918

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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192,206 + MPMX19_06916 0.33 -2.1
192,206 + MPMX19_06916 0.33 -0.3
192,206 + MPMX19_06916 0.33 -0.3
192,207 - MPMX19_06916 0.33 -0.3
192,207 - MPMX19_06916 0.33 -0.7
192,207 - MPMX19_06916 0.33 -0.9
192,207 - MPMX19_06916 0.33 +2.3
192,743 + +0.6
192,743 + +0.1
192,744 - -0.9
193,107 + MPMX19_06917 0.24 +0.9
193,107 + MPMX19_06917 0.24 +0.1
193,108 - MPMX19_06917 0.24 -0.5
193,251 + MPMX19_06917 0.39 +0.9
193,251 + MPMX19_06917 0.39 +0.8
193,251 + MPMX19_06917 0.39 +0.4
193,314 + MPMX19_06917 0.46 -0.2
193,315 - MPMX19_06917 0.46 -0.1
193,467 + MPMX19_06917 0.62 +0.5
193,736 + +0.6
193,852 + -0.1
193,852 + +0.1
193,853 - +1.4
193,853 - -0.1
193,870 + +0.7
193,896 + -0.2
193,896 + -1.3
193,897 - +0.0
193,897 - +0.8
193,897 - -1.0
193,897 - +0.4
193,897 - +0.1
193,949 - +0.1
194,403 - MPMX19_06918 0.39 +1.3
194,451 + MPMX19_06918 0.43 -0.8
194,451 + MPMX19_06918 0.43 +0.2
194,451 + MPMX19_06918 0.43 -0.6
194,451 + MPMX19_06918 0.43 +0.8
194,451 + MPMX19_06918 0.43 +0.5
194,452 - MPMX19_06918 0.43 -2.1
194,452 - MPMX19_06918 0.43 +0.5
194,452 - MPMX19_06918 0.43 +0.2
194,475 + MPMX19_06918 0.45 -0.1
194,625 + MPMX19_06918 0.58 +1.7
194,626 - MPMX19_06918 0.58 -1.1
194,626 - MPMX19_06918 0.58 -1.3
194,626 - MPMX19_06918 0.58 +0.7
194,626 - MPMX19_06918 0.58 +0.9
194,706 + MPMX19_06918 0.65 -1.1
194,706 + MPMX19_06918 0.65 -0.8

Or see this region's nucleotide sequence