Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06913

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06911 and MPMX19_06912 are separated by 1 nucleotidesMPMX19_06912 and MPMX19_06913 are separated by 103 nucleotidesMPMX19_06913 and MPMX19_06914 are separated by 64 nucleotides MPMX19_06911: MPMX19_06911 - Lipopolysaccharide export system ATP-binding protein LptB, at 186,869 to 187,624 _06911 MPMX19_06912: MPMX19_06912 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 187,626 to 188,369 _06912 MPMX19_06913: MPMX19_06913 - D-galactarolactone cycloisomerase, at 188,473 to 189,573 _06913 MPMX19_06914: MPMX19_06914 - Acyl-CoA dehydrogenase FadE27, at 189,638 to 190,723 _06914 Position (kb) 188 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 187.498 kb on + strand, within MPMX19_06911at 187.498 kb on + strand, within MPMX19_06911at 187.499 kb on - strand, within MPMX19_06911at 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.265 kb on + strand, within MPMX19_06912at 188.265 kb on + strand, within MPMX19_06912at 188.265 kb on + strand, within MPMX19_06912at 188.266 kb on - strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.272 kb on - strand, within MPMX19_06912at 188.272 kb on - strand, within MPMX19_06912at 188.272 kb on - strand, within MPMX19_06912at 188.349 kb on + strandat 188.350 kb on - strandat 188.350 kb on - strandat 188.572 kb on + strandat 188.572 kb on + strandat 188.572 kb on + strandat 188.572 kb on + strandat 188.573 kb on - strandat 188.573 kb on - strandat 188.573 kb on - strandat 188.573 kb on - strandat 188.632 kb on + strand, within MPMX19_06913at 188.632 kb on + strand, within MPMX19_06913at 188.632 kb on + strand, within MPMX19_06913at 188.632 kb on + strand, within MPMX19_06913at 188.633 kb on - strand, within MPMX19_06913at 188.776 kb on + strand, within MPMX19_06913at 188.777 kb on - strand, within MPMX19_06913at 188.777 kb on - strand, within MPMX19_06913at 188.777 kb on - strand, within MPMX19_06913at 188.777 kb on - strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.885 kb on - strand, within MPMX19_06913at 188.885 kb on - strand, within MPMX19_06913at 188.885 kb on - strand, within MPMX19_06913at 189.189 kb on + strand, within MPMX19_06913at 189.190 kb on - strand, within MPMX19_06913at 189.259 kb on + strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.361 kb on + strand, within MPMX19_06913at 189.362 kb on + strand, within MPMX19_06913at 189.436 kb on + strand, within MPMX19_06913at 189.436 kb on + strand, within MPMX19_06913at 189.437 kb on - strand, within MPMX19_06913at 189.437 kb on - strand, within MPMX19_06913at 189.437 kb on - strand, within MPMX19_06913at 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.679 kb on + strandat 189.680 kb on - strandat 190.337 kb on + strand, within MPMX19_06914at 190.337 kb on + strand, within MPMX19_06914at 190.338 kb on - strand, within MPMX19_06914at 190.338 kb on - strand, within MPMX19_06914at 190.338 kb on - strand, within MPMX19_06914

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
187,498 + MPMX19_06911 0.83 -0.4
187,498 + MPMX19_06911 0.83 -0.3
187,499 - MPMX19_06911 0.83 -1.1
187,610 + -0.3
187,610 + +0.4
187,610 + +0.3
187,610 + -0.2
187,610 + +1.1
187,610 + -0.2
187,965 + MPMX19_06912 0.46 -1.4
187,965 + MPMX19_06912 0.46 -0.1
187,965 + MPMX19_06912 0.46 +0.7
187,965 + MPMX19_06912 0.46 +1.0
187,965 + MPMX19_06912 0.46 +1.0
187,965 + MPMX19_06912 0.46 +0.1
187,965 + MPMX19_06912 0.46 -0.6
187,965 + MPMX19_06912 0.46 -0.7
187,965 + MPMX19_06912 0.46 -0.8
187,965 + MPMX19_06912 0.46 -0.3
187,965 + MPMX19_06912 0.46 +0.9
187,966 - MPMX19_06912 0.46 -0.5
187,966 - MPMX19_06912 0.46 +1.1
187,966 - MPMX19_06912 0.46 -0.3
187,966 - MPMX19_06912 0.46 -0.3
187,966 - MPMX19_06912 0.46 +0.5
187,966 - MPMX19_06912 0.46 -0.3
187,966 - MPMX19_06912 0.46 +0.3
187,966 - MPMX19_06912 0.46 -0.4
188,010 + MPMX19_06912 0.52 -0.3
188,010 + MPMX19_06912 0.52 +1.4
188,010 + MPMX19_06912 0.52 -0.5
188,010 + MPMX19_06912 0.52 -0.8
188,010 + MPMX19_06912 0.52 -0.9
188,011 - MPMX19_06912 0.52 -0.2
188,011 - MPMX19_06912 0.52 +1.9
188,011 - MPMX19_06912 0.52 -1.6
188,011 - MPMX19_06912 0.52 -0.9
188,011 - MPMX19_06912 0.52 -0.1
188,011 - MPMX19_06912 0.52 -0.1
188,265 + MPMX19_06912 0.86 -0.3
188,265 + MPMX19_06912 0.86 -1.5
188,265 + MPMX19_06912 0.86 -2.4
188,266 - MPMX19_06912 0.86 +1.2
188,271 + MPMX19_06912 0.87 +1.1
188,271 + MPMX19_06912 0.87 -0.9
188,271 + MPMX19_06912 0.87 +0.4
188,271 + MPMX19_06912 0.87 -0.1
188,271 + MPMX19_06912 0.87 -0.2
188,271 + MPMX19_06912 0.87 -0.3
188,272 - MPMX19_06912 0.87 -0.1
188,272 - MPMX19_06912 0.87 +1.7
188,272 - MPMX19_06912 0.87 +0.2
188,349 + -0.1
188,350 - +0.8
188,350 - -0.3
188,572 + +0.1
188,572 + +1.0
188,572 + +0.9
188,572 + +0.1
188,573 - -0.3
188,573 - -0.6
188,573 - +0.5
188,573 - -0.1
188,632 + MPMX19_06913 0.14 -0.2
188,632 + MPMX19_06913 0.14 -0.1
188,632 + MPMX19_06913 0.14 -0.2
188,632 + MPMX19_06913 0.14 -0.2
188,633 - MPMX19_06913 0.15 -0.4
188,776 + MPMX19_06913 0.28 -1.8
188,777 - MPMX19_06913 0.28 -1.0
188,777 - MPMX19_06913 0.28 +0.5
188,777 - MPMX19_06913 0.28 +0.3
188,777 - MPMX19_06913 0.28 +0.1
188,884 + MPMX19_06913 0.37 -1.2
188,884 + MPMX19_06913 0.37 -0.1
188,884 + MPMX19_06913 0.37 -1.1
188,884 + MPMX19_06913 0.37 -1.6
188,884 + MPMX19_06913 0.37 -0.2
188,884 + MPMX19_06913 0.37 -0.8
188,885 - MPMX19_06913 0.37 +0.3
188,885 - MPMX19_06913 0.37 +0.6
188,885 - MPMX19_06913 0.37 -1.6
189,189 + MPMX19_06913 0.65 +0.5
189,190 - MPMX19_06913 0.65 -0.2
189,259 + MPMX19_06913 0.71 +0.2
189,260 - MPMX19_06913 0.71 +0.8
189,260 - MPMX19_06913 0.71 -0.2
189,260 - MPMX19_06913 0.71 -0.2
189,260 - MPMX19_06913 0.71 +1.8
189,260 - MPMX19_06913 0.71 +0.7
189,260 - MPMX19_06913 0.71 +0.3
189,260 - MPMX19_06913 0.71 +0.8
189,361 + MPMX19_06913 0.81 -0.3
189,362 + MPMX19_06913 0.81 -0.1
189,436 + MPMX19_06913 0.87 -0.1
189,436 + MPMX19_06913 0.87 -0.4
189,437 - MPMX19_06913 0.88 -0.1
189,437 - MPMX19_06913 0.88 +0.2
189,437 - MPMX19_06913 0.88 -0.3
189,637 + -1.5
189,637 + -0.3
189,637 + +0.0
189,637 + -0.4
189,637 + +0.9
189,637 + -0.1
189,637 + -0.4
189,637 + -1.1
189,637 + +0.9
189,637 + +0.1
189,637 + +2.1
189,637 + -0.6
189,637 + +2.0
189,637 + -0.2
189,637 + +0.1
189,637 + +0.9
189,637 + +0.3
189,637 + +0.7
189,637 + -0.4
189,637 + -0.5
189,637 + -0.1
189,637 + -1.8
189,637 + +0.6
189,637 + -0.2
189,637 + +0.7
189,637 + +0.7
189,637 + -0.2
189,638 - -0.2
189,638 - -2.2
189,638 - +1.2
189,638 - +0.6
189,638 - +0.6
189,638 - +1.0
189,638 - -2.2
189,638 - -0.1
189,638 - -2.2
189,638 - +0.3
189,638 - -0.2
189,638 - -0.4
189,638 - +1.9
189,638 - -0.2
189,638 - -0.2
189,638 - +2.8
189,638 - +0.1
189,638 - -1.1
189,638 - +0.0
189,638 - +0.8
189,638 - +0.3
189,679 + -1.2
189,680 - -0.6
190,337 + MPMX19_06914 0.64 +0.8
190,337 + MPMX19_06914 0.64 +0.3
190,338 - MPMX19_06914 0.64 -0.6
190,338 - MPMX19_06914 0.64 -3.1
190,338 - MPMX19_06914 0.64 +0.4

Or see this region's nucleotide sequence