Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06880

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06878 and MPMX19_06879 are separated by 372 nucleotidesMPMX19_06879 and MPMX19_06880 are separated by 90 nucleotidesMPMX19_06880 and MPMX19_06881 are separated by 56 nucleotides MPMX19_06878: MPMX19_06878 - Putative amino-acid ABC transporter-binding protein YhdW, at 149,646 to 150,716 _06878 MPMX19_06879: MPMX19_06879 - hypothetical protein, at 151,089 to 151,280 _06879 MPMX19_06880: MPMX19_06880 - Validamycin A dioxygenase, at 151,371 to 152,417 _06880 MPMX19_06881: MPMX19_06881 - O-acetyl-L-homoserine sulfhydrylase, at 152,474 to 153,769 _06881 Position (kb) 151 152 153Strain fitness (log2 ratio) -2 -1 0 1at 151.057 kb on - strandat 151.075 kb on - strandat 151.636 kb on - strand, within MPMX19_06880at 151.636 kb on - strand, within MPMX19_06880at 151.636 kb on - strand, within MPMX19_06880at 151.636 kb on - strand, within MPMX19_06880at 152.319 kb on + strandat 152.319 kb on + strandat 152.319 kb on + strandat 152.319 kb on + strandat 152.319 kb on + strandat 152.320 kb on - strandat 152.320 kb on - strandat 152.320 kb on - strandat 152.320 kb on - strandat 152.320 kb on - strandat 152.320 kb on - strandat 152.388 kb on + strandat 152.389 kb on - strandat 152.389 kb on - strandat 152.485 kb on + strandat 152.486 kb on - strandat 152.486 kb on - strandat 152.486 kb on - strandat 152.486 kb on - strandat 152.641 kb on + strand, within MPMX19_06881at 152.641 kb on + strand, within MPMX19_06881at 152.641 kb on + strand, within MPMX19_06881at 152.641 kb on + strand, within MPMX19_06881at 152.641 kb on + strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.930 kb on + strand, within MPMX19_06881at 152.930 kb on + strand, within MPMX19_06881at 152.931 kb on - strand, within MPMX19_06881at 152.931 kb on - strand, within MPMX19_06881at 152.933 kb on + strand, within MPMX19_06881at 152.933 kb on + strand, within MPMX19_06881at 152.933 kb on + strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.212 kb on + strand, within MPMX19_06881at 153.212 kb on + strand, within MPMX19_06881at 153.212 kb on + strand, within MPMX19_06881at 153.263 kb on + strand, within MPMX19_06881at 153.263 kb on + strand, within MPMX19_06881at 153.263 kb on + strand, within MPMX19_06881at 153.264 kb on - strand, within MPMX19_06881at 153.264 kb on - strand, within MPMX19_06881at 153.407 kb on + strand, within MPMX19_06881

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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151,057 - +0.5
151,075 - -2.0
151,636 - MPMX19_06880 0.25 -0.8
151,636 - MPMX19_06880 0.25 -2.4
151,636 - MPMX19_06880 0.25 -0.7
151,636 - MPMX19_06880 0.25 -1.1
152,319 + +0.9
152,319 + -0.5
152,319 + -0.8
152,319 + +1.5
152,319 + +0.2
152,320 - +0.1
152,320 - -0.3
152,320 - -1.0
152,320 - -0.2
152,320 - -1.9
152,320 - -0.2
152,388 + -0.2
152,389 - +1.7
152,389 - +0.9
152,485 + -1.8
152,486 - +0.6
152,486 - +1.5
152,486 - +0.2
152,486 - +0.5
152,641 + MPMX19_06881 0.13 +0.6
152,641 + MPMX19_06881 0.13 -0.2
152,641 + MPMX19_06881 0.13 -1.1
152,641 + MPMX19_06881 0.13 -0.1
152,641 + MPMX19_06881 0.13 -0.2
152,642 - MPMX19_06881 0.13 +1.1
152,642 - MPMX19_06881 0.13 -0.5
152,642 - MPMX19_06881 0.13 +0.2
152,642 - MPMX19_06881 0.13 +0.7
152,642 - MPMX19_06881 0.13 -0.3
152,642 - MPMX19_06881 0.13 -0.3
152,642 - MPMX19_06881 0.13 +0.4
152,642 - MPMX19_06881 0.13 +0.4
152,645 + MPMX19_06881 0.13 -0.2
152,645 + MPMX19_06881 0.13 -1.5
152,645 + MPMX19_06881 0.13 +0.1
152,645 + MPMX19_06881 0.13 -0.8
152,645 + MPMX19_06881 0.13 -0.4
152,645 + MPMX19_06881 0.13 +0.2
152,645 + MPMX19_06881 0.13 +0.5
152,645 + MPMX19_06881 0.13 +0.5
152,645 + MPMX19_06881 0.13 -0.2
152,645 + MPMX19_06881 0.13 -1.4
152,646 - MPMX19_06881 0.13 +0.2
152,646 - MPMX19_06881 0.13 -0.8
152,646 - MPMX19_06881 0.13 -0.3
152,646 - MPMX19_06881 0.13 -0.3
152,646 - MPMX19_06881 0.13 -0.5
152,646 - MPMX19_06881 0.13 +1.2
152,646 - MPMX19_06881 0.13 +0.0
152,646 - MPMX19_06881 0.13 +0.9
152,646 - MPMX19_06881 0.13 +1.0
152,646 - MPMX19_06881 0.13 +0.5
152,646 - MPMX19_06881 0.13 +0.9
152,930 + MPMX19_06881 0.35 +0.6
152,930 + MPMX19_06881 0.35 +0.3
152,931 - MPMX19_06881 0.35 -0.9
152,931 - MPMX19_06881 0.35 -1.1
152,933 + MPMX19_06881 0.35 -0.2
152,933 + MPMX19_06881 0.35 +0.1
152,933 + MPMX19_06881 0.35 -1.1
152,934 - MPMX19_06881 0.35 +0.8
152,934 - MPMX19_06881 0.35 -0.6
152,934 - MPMX19_06881 0.35 -1.8
152,934 - MPMX19_06881 0.35 -0.5
152,934 - MPMX19_06881 0.35 -2.2
152,934 - MPMX19_06881 0.35 -0.9
152,934 - MPMX19_06881 0.35 +0.2
153,101 + MPMX19_06881 0.48 -0.3
153,101 + MPMX19_06881 0.48 +0.0
153,101 + MPMX19_06881 0.48 -0.8
153,101 + MPMX19_06881 0.48 -2.5
153,101 + MPMX19_06881 0.48 -1.2
153,212 + MPMX19_06881 0.57 -0.3
153,212 + MPMX19_06881 0.57 +0.7
153,212 + MPMX19_06881 0.57 +0.4
153,263 + MPMX19_06881 0.61 +0.3
153,263 + MPMX19_06881 0.61 +0.3
153,263 + MPMX19_06881 0.61 -0.1
153,264 - MPMX19_06881 0.61 +0.2
153,264 - MPMX19_06881 0.61 +1.3
153,407 + MPMX19_06881 0.72 +0.5

Or see this region's nucleotide sequence