Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06871

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06870 and MPMX19_06871 are separated by 21 nucleotidesMPMX19_06871 and MPMX19_06872 are separated by 1 nucleotidesMPMX19_06872 and MPMX19_06873 are separated by 32 nucleotides MPMX19_06870: MPMX19_06870 - Riboflavin biosynthesis protein RibBA, at 140,479 to 141,606 _06870 MPMX19_06871: MPMX19_06871 - Long-chain-fatty-acid--CoA ligase FadD15, at 141,628 to 143,538 _06871 MPMX19_06872: MPMX19_06872 - Short-chain-enoyl-CoA hydratase, at 143,540 to 144,328 _06872 MPMX19_06873: MPMX19_06873 - F420-dependent glucose-6-phosphate dehydrogenase, at 144,361 to 145,500 _06873 Position (kb) 141 142 143 144Strain fitness (log2 ratio) -2 -1 0 1 2at 141.147 kb on + strand, within MPMX19_06870at 141.147 kb on + strand, within MPMX19_06870at 141.147 kb on + strand, within MPMX19_06870at 141.148 kb on - strand, within MPMX19_06870at 141.148 kb on - strand, within MPMX19_06870at 141.148 kb on - strand, within MPMX19_06870at 141.148 kb on - strand, within MPMX19_06870at 141.148 kb on - strand, within MPMX19_06870at 141.148 kb on - strand, within MPMX19_06870at 141.216 kb on + strand, within MPMX19_06870at 141.216 kb on + strand, within MPMX19_06870at 141.216 kb on + strand, within MPMX19_06870at 141.216 kb on + strand, within MPMX19_06870at 141.217 kb on - strand, within MPMX19_06870at 141.217 kb on - strand, within MPMX19_06870at 141.217 kb on - strand, within MPMX19_06870at 141.217 kb on - strand, within MPMX19_06870at 141.797 kb on - strandat 141.887 kb on + strand, within MPMX19_06871at 141.965 kb on + strand, within MPMX19_06871at 141.966 kb on - strand, within MPMX19_06871at 142.004 kb on + strand, within MPMX19_06871at 142.004 kb on + strand, within MPMX19_06871at 142.004 kb on + strand, within MPMX19_06871at 142.004 kb on + strand, within MPMX19_06871at 142.004 kb on + strand, within MPMX19_06871at 142.005 kb on - strand, within MPMX19_06871at 142.005 kb on - strand, within MPMX19_06871at 142.005 kb on - strand, within MPMX19_06871at 142.005 kb on - strand, within MPMX19_06871at 142.005 kb on - strand, within MPMX19_06871at 142.005 kb on - strand, within MPMX19_06871at 142.005 kb on - strand, within MPMX19_06871at 142.005 kb on - strand, within MPMX19_06871at 142.005 kb on - strand, within MPMX19_06871at 142.190 kb on + strand, within MPMX19_06871at 142.190 kb on + strand, within MPMX19_06871at 142.191 kb on - strand, within MPMX19_06871at 142.191 kb on - strand, within MPMX19_06871at 142.346 kb on + strand, within MPMX19_06871at 142.346 kb on + strand, within MPMX19_06871at 142.346 kb on + strand, within MPMX19_06871at 142.346 kb on + strand, within MPMX19_06871at 142.347 kb on - strand, within MPMX19_06871at 142.347 kb on - strand, within MPMX19_06871at 142.347 kb on - strand, within MPMX19_06871at 142.421 kb on + strand, within MPMX19_06871at 142.421 kb on + strand, within MPMX19_06871at 142.422 kb on - strand, within MPMX19_06871at 142.427 kb on + strand, within MPMX19_06871at 142.428 kb on - strand, within MPMX19_06871at 142.428 kb on - strand, within MPMX19_06871at 142.428 kb on - strand, within MPMX19_06871at 142.634 kb on + strand, within MPMX19_06871at 142.634 kb on + strand, within MPMX19_06871at 142.634 kb on + strand, within MPMX19_06871at 142.634 kb on + strand, within MPMX19_06871at 142.643 kb on + strand, within MPMX19_06871at 142.643 kb on + strand, within MPMX19_06871at 142.643 kb on + strand, within MPMX19_06871at 142.643 kb on + strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.667 kb on + strand, within MPMX19_06871at 142.667 kb on + strand, within MPMX19_06871at 142.667 kb on + strand, within MPMX19_06871at 142.668 kb on - strand, within MPMX19_06871at 142.668 kb on - strand, within MPMX19_06871at 142.668 kb on - strand, within MPMX19_06871at 142.668 kb on - strand, within MPMX19_06871at 142.668 kb on - strand, within MPMX19_06871at 142.725 kb on - strand, within MPMX19_06871at 142.725 kb on - strand, within MPMX19_06871at 142.922 kb on + strand, within MPMX19_06871at 142.922 kb on + strand, within MPMX19_06871at 142.922 kb on + strand, within MPMX19_06871at 142.922 kb on + strand, within MPMX19_06871at 142.923 kb on - strand, within MPMX19_06871at 142.923 kb on - strand, within MPMX19_06871at 142.923 kb on - strand, within MPMX19_06871at 142.923 kb on - strand, within MPMX19_06871at 143.165 kb on + strand, within MPMX19_06871at 143.165 kb on + strand, within MPMX19_06871at 143.166 kb on - strand, within MPMX19_06871at 143.166 kb on - strand, within MPMX19_06871at 143.166 kb on - strand, within MPMX19_06871at 143.166 kb on - strand, within MPMX19_06871at 143.195 kb on + strand, within MPMX19_06871at 143.195 kb on + strand, within MPMX19_06871at 143.195 kb on + strand, within MPMX19_06871at 143.195 kb on + strand, within MPMX19_06871at 143.196 kb on - strand, within MPMX19_06871at 143.196 kb on - strand, within MPMX19_06871at 143.196 kb on - strand, within MPMX19_06871at 143.196 kb on - strand, within MPMX19_06871at 143.237 kb on + strand, within MPMX19_06871at 143.237 kb on + strand, within MPMX19_06871at 143.237 kb on + strand, within MPMX19_06871at 143.237 kb on + strand, within MPMX19_06871at 143.237 kb on + strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.460 kb on - strandat 143.460 kb on - strandat 143.460 kb on - strandat 143.691 kb on + strand, within MPMX19_06872at 143.691 kb on + strand, within MPMX19_06872at 143.691 kb on + strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.844 kb on + strand, within MPMX19_06872at 143.844 kb on + strand, within MPMX19_06872at 143.844 kb on + strand, within MPMX19_06872at 143.844 kb on + strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 144.310 kb on + strandat 144.310 kb on + strandat 144.311 kb on - strandat 144.312 kb on + strandat 144.312 kb on + strandat 144.312 kb on + strandat 144.312 kb on + strandat 144.313 kb on - strandat 144.313 kb on - strandat 144.313 kb on - strandat 144.313 kb on - strandat 144.313 kb on - strandat 144.461 kb on + strandat 144.461 kb on + strandat 144.461 kb on + strandat 144.462 kb on - strandat 144.462 kb on - strandat 144.462 kb on - strandat 144.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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141,147 + MPMX19_06870 0.59 +2.3
141,147 + MPMX19_06870 0.59 +0.5
141,147 + MPMX19_06870 0.59 -0.9
141,148 - MPMX19_06870 0.59 -0.6
141,148 - MPMX19_06870 0.59 -1.0
141,148 - MPMX19_06870 0.59 -0.8
141,148 - MPMX19_06870 0.59 -0.9
141,148 - MPMX19_06870 0.59 -1.6
141,148 - MPMX19_06870 0.59 -0.2
141,216 + MPMX19_06870 0.65 -0.3
141,216 + MPMX19_06870 0.65 -0.2
141,216 + MPMX19_06870 0.65 +0.2
141,216 + MPMX19_06870 0.65 -1.6
141,217 - MPMX19_06870 0.65 +0.2
141,217 - MPMX19_06870 0.65 -0.2
141,217 - MPMX19_06870 0.65 +0.2
141,217 - MPMX19_06870 0.65 +0.8
141,797 - +0.6
141,887 + MPMX19_06871 0.14 -0.2
141,965 + MPMX19_06871 0.18 +0.1
141,966 - MPMX19_06871 0.18 -0.7
142,004 + MPMX19_06871 0.20 +0.2
142,004 + MPMX19_06871 0.20 -1.3
142,004 + MPMX19_06871 0.20 -0.9
142,004 + MPMX19_06871 0.20 +0.8
142,004 + MPMX19_06871 0.20 -0.5
142,005 - MPMX19_06871 0.20 +0.2
142,005 - MPMX19_06871 0.20 +1.9
142,005 - MPMX19_06871 0.20 +1.7
142,005 - MPMX19_06871 0.20 +0.7
142,005 - MPMX19_06871 0.20 -0.4
142,005 - MPMX19_06871 0.20 -1.2
142,005 - MPMX19_06871 0.20 -0.5
142,005 - MPMX19_06871 0.20 +1.0
142,005 - MPMX19_06871 0.20 +0.1
142,190 + MPMX19_06871 0.29 +0.8
142,190 + MPMX19_06871 0.29 +0.8
142,191 - MPMX19_06871 0.29 +0.1
142,191 - MPMX19_06871 0.29 +0.6
142,346 + MPMX19_06871 0.38 +0.5
142,346 + MPMX19_06871 0.38 +1.9
142,346 + MPMX19_06871 0.38 -0.1
142,346 + MPMX19_06871 0.38 -2.6
142,347 - MPMX19_06871 0.38 -1.1
142,347 - MPMX19_06871 0.38 -0.6
142,347 - MPMX19_06871 0.38 -0.3
142,421 + MPMX19_06871 0.41 -1.1
142,421 + MPMX19_06871 0.41 +0.4
142,422 - MPMX19_06871 0.42 -1.6
142,427 + MPMX19_06871 0.42 -1.3
142,428 - MPMX19_06871 0.42 -0.1
142,428 - MPMX19_06871 0.42 -1.5
142,428 - MPMX19_06871 0.42 +0.5
142,634 + MPMX19_06871 0.53 +0.5
142,634 + MPMX19_06871 0.53 -1.8
142,634 + MPMX19_06871 0.53 +0.3
142,634 + MPMX19_06871 0.53 +0.2
142,643 + MPMX19_06871 0.53 -1.1
142,643 + MPMX19_06871 0.53 +0.1
142,643 + MPMX19_06871 0.53 +0.0
142,643 + MPMX19_06871 0.53 +0.1
142,644 - MPMX19_06871 0.53 +0.1
142,644 - MPMX19_06871 0.53 +0.3
142,644 - MPMX19_06871 0.53 +1.9
142,644 - MPMX19_06871 0.53 -0.1
142,644 - MPMX19_06871 0.53 +0.4
142,644 - MPMX19_06871 0.53 -0.1
142,644 - MPMX19_06871 0.53 -0.1
142,644 - MPMX19_06871 0.53 +0.1
142,644 - MPMX19_06871 0.53 -1.1
142,644 - MPMX19_06871 0.53 -0.5
142,644 - MPMX19_06871 0.53 +1.5
142,667 + MPMX19_06871 0.54 -0.7
142,667 + MPMX19_06871 0.54 -2.2
142,667 + MPMX19_06871 0.54 -1.8
142,668 - MPMX19_06871 0.54 -0.4
142,668 - MPMX19_06871 0.54 -1.3
142,668 - MPMX19_06871 0.54 -0.5
142,668 - MPMX19_06871 0.54 -0.3
142,668 - MPMX19_06871 0.54 -0.2
142,725 - MPMX19_06871 0.57 -1.9
142,725 - MPMX19_06871 0.57 -0.9
142,922 + MPMX19_06871 0.68 -0.4
142,922 + MPMX19_06871 0.68 +0.1
142,922 + MPMX19_06871 0.68 -0.7
142,922 + MPMX19_06871 0.68 -0.1
142,923 - MPMX19_06871 0.68 -0.6
142,923 - MPMX19_06871 0.68 +0.4
142,923 - MPMX19_06871 0.68 -1.5
142,923 - MPMX19_06871 0.68 -0.8
143,165 + MPMX19_06871 0.80 +0.2
143,165 + MPMX19_06871 0.80 -0.3
143,166 - MPMX19_06871 0.80 +1.4
143,166 - MPMX19_06871 0.80 -0.9
143,166 - MPMX19_06871 0.80 -1.0
143,166 - MPMX19_06871 0.80 -0.1
143,195 + MPMX19_06871 0.82 -0.3
143,195 + MPMX19_06871 0.82 +1.1
143,195 + MPMX19_06871 0.82 -1.7
143,195 + MPMX19_06871 0.82 +0.4
143,196 - MPMX19_06871 0.82 +0.3
143,196 - MPMX19_06871 0.82 -0.6
143,196 - MPMX19_06871 0.82 +0.2
143,196 - MPMX19_06871 0.82 +0.4
143,237 + MPMX19_06871 0.84 +0.3
143,237 + MPMX19_06871 0.84 -0.5
143,237 + MPMX19_06871 0.84 -1.5
143,237 + MPMX19_06871 0.84 +0.3
143,237 + MPMX19_06871 0.84 +1.1
143,238 - MPMX19_06871 0.84 +0.3
143,238 - MPMX19_06871 0.84 -0.5
143,238 - MPMX19_06871 0.84 -1.9
143,238 - MPMX19_06871 0.84 -0.5
143,238 - MPMX19_06871 0.84 +1.1
143,238 - MPMX19_06871 0.84 -2.2
143,238 - MPMX19_06871 0.84 +0.2
143,238 - MPMX19_06871 0.84 +0.5
143,460 - +1.5
143,460 - +0.4
143,460 - +0.8
143,691 + MPMX19_06872 0.19 +0.7
143,691 + MPMX19_06872 0.19 -1.9
143,691 + MPMX19_06872 0.19 +1.2
143,692 - MPMX19_06872 0.19 +0.9
143,692 - MPMX19_06872 0.19 +1.2
143,692 - MPMX19_06872 0.19 -0.8
143,692 - MPMX19_06872 0.19 -0.2
143,692 - MPMX19_06872 0.19 +0.1
143,844 + MPMX19_06872 0.39 -1.1
143,844 + MPMX19_06872 0.39 -0.1
143,844 + MPMX19_06872 0.39 -0.9
143,844 + MPMX19_06872 0.39 -0.3
143,845 - MPMX19_06872 0.39 -1.0
143,845 - MPMX19_06872 0.39 -2.4
143,845 - MPMX19_06872 0.39 -0.2
143,845 - MPMX19_06872 0.39 -0.2
143,845 - MPMX19_06872 0.39 +0.5
143,845 - MPMX19_06872 0.39 -0.5
144,310 + -0.2
144,310 + +0.4
144,311 - +0.4
144,312 + -1.5
144,312 + -1.4
144,312 + -0.5
144,312 + +0.4
144,313 - -1.3
144,313 - +0.0
144,313 - +1.0
144,313 - -0.2
144,313 - -0.3
144,461 + +0.2
144,461 + -0.1
144,461 + +0.6
144,462 - +1.0
144,462 - +0.0
144,462 - -0.3
144,462 - +0.4

Or see this region's nucleotide sequence