Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06836

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06834 and MPMX19_06835 are separated by 89 nucleotidesMPMX19_06835 and MPMX19_06836 are separated by 140 nucleotidesMPMX19_06836 and MPMX19_06837 are separated by 41 nucleotides MPMX19_06834: MPMX19_06834 - Vitamin B6 salvage pathway transcriptional repressor PtsJ, at 99,062 to 100,447 _06834 MPMX19_06835: MPMX19_06835 - Leucine-responsive regulatory protein, at 100,537 to 101,043 _06835 MPMX19_06836: MPMX19_06836 - Glutarate-semialdehyde dehydrogenase, at 101,184 to 102,677 _06836 MPMX19_06837: MPMX19_06837 - Putrescine--pyruvate aminotransferase, at 102,719 to 104,098 _06837 Position (kb) 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1at 100.401 kb on + strandat 100.401 kb on + strandat 100.401 kb on + strandat 100.402 kb on - strandat 100.402 kb on - strandat 100.402 kb on - strandat 100.402 kb on - strandat 100.402 kb on - strandat 100.699 kb on + strand, within MPMX19_06835at 100.861 kb on + strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.897 kb on + strand, within MPMX19_06835at 100.897 kb on + strand, within MPMX19_06835at 100.897 kb on + strand, within MPMX19_06835at 100.897 kb on + strand, within MPMX19_06835at 100.898 kb on - strand, within MPMX19_06835at 100.898 kb on - strand, within MPMX19_06835at 100.948 kb on + strand, within MPMX19_06835at 100.948 kb on + strand, within MPMX19_06835at 100.949 kb on - strand, within MPMX19_06835at 100.949 kb on - strand, within MPMX19_06835at 100.957 kb on + strand, within MPMX19_06835at 100.957 kb on + strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 101.044 kb on + strandat 101.045 kb on - strandat 101.045 kb on - strandat 101.125 kb on - strandat 101.134 kb on - strandat 101.134 kb on - strandat 101.169 kb on - strandat 101.265 kb on + strandat 101.265 kb on + strandat 101.266 kb on - strandat 101.266 kb on - strandat 101.266 kb on - strandat 101.556 kb on + strand, within MPMX19_06836at 101.580 kb on + strand, within MPMX19_06836at 101.580 kb on + strand, within MPMX19_06836at 101.580 kb on + strand, within MPMX19_06836at 101.581 kb on - strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.129 kb on + strand, within MPMX19_06836at 102.129 kb on + strand, within MPMX19_06836at 102.130 kb on - strand, within MPMX19_06836at 102.130 kb on - strand, within MPMX19_06836at 102.130 kb on - strand, within MPMX19_06836at 102.130 kb on - strand, within MPMX19_06836at 102.327 kb on + strand, within MPMX19_06836at 102.327 kb on + strand, within MPMX19_06836at 102.328 kb on - strand, within MPMX19_06836at 102.328 kb on - strand, within MPMX19_06836at 102.328 kb on - strand, within MPMX19_06836at 102.459 kb on + strand, within MPMX19_06836at 102.474 kb on + strand, within MPMX19_06836at 102.528 kb on + strandat 102.654 kb on + strandat 102.654 kb on + strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.845 kb on + strandat 102.845 kb on + strandat 102.846 kb on - strandat 102.846 kb on - strandat 102.846 kb on - strandat 102.846 kb on - strandat 102.846 kb on - strandat 102.896 kb on + strand, within MPMX19_06837at 102.897 kb on - strand, within MPMX19_06837at 102.897 kb on - strand, within MPMX19_06837at 102.897 kb on - strand, within MPMX19_06837at 102.897 kb on - strand, within MPMX19_06837at 102.897 kb on - strand, within MPMX19_06837at 102.897 kb on - strand, within MPMX19_06837at 102.914 kb on + strand, within MPMX19_06837at 102.968 kb on + strand, within MPMX19_06837at 102.971 kb on + strand, within MPMX19_06837at 102.971 kb on + strand, within MPMX19_06837at 102.971 kb on + strand, within MPMX19_06837at 102.971 kb on + strand, within MPMX19_06837at 102.971 kb on + strand, within MPMX19_06837at 102.972 kb on - strand, within MPMX19_06837at 102.972 kb on - strand, within MPMX19_06837at 102.972 kb on - strand, within MPMX19_06837at 102.972 kb on - strand, within MPMX19_06837at 102.980 kb on + strand, within MPMX19_06837at 102.980 kb on + strand, within MPMX19_06837at 102.981 kb on - strand, within MPMX19_06837at 102.981 kb on - strand, within MPMX19_06837at 102.981 kb on - strand, within MPMX19_06837at 103.115 kb on + strand, within MPMX19_06837at 103.115 kb on + strand, within MPMX19_06837at 103.116 kb on - strand, within MPMX19_06837at 103.118 kb on + strand, within MPMX19_06837at 103.118 kb on + strand, within MPMX19_06837at 103.118 kb on + strand, within MPMX19_06837at 103.118 kb on + strand, within MPMX19_06837at 103.118 kb on + strand, within MPMX19_06837at 103.119 kb on - strand, within MPMX19_06837at 103.175 kb on + strand, within MPMX19_06837at 103.176 kb on - strand, within MPMX19_06837at 103.277 kb on + strand, within MPMX19_06837at 103.277 kb on + strand, within MPMX19_06837at 103.278 kb on - strand, within MPMX19_06837at 103.280 kb on + strand, within MPMX19_06837at 103.280 kb on + strand, within MPMX19_06837at 103.280 kb on + strand, within MPMX19_06837at 103.280 kb on + strand, within MPMX19_06837at 103.280 kb on + strand, within MPMX19_06837at 103.281 kb on - strand, within MPMX19_06837at 103.281 kb on - strand, within MPMX19_06837at 103.281 kb on - strand, within MPMX19_06837at 103.281 kb on - strand, within MPMX19_06837at 103.551 kb on - strand, within MPMX19_06837at 103.601 kb on + strand, within MPMX19_06837at 103.601 kb on + strand, within MPMX19_06837at 103.601 kb on + strand, within MPMX19_06837at 103.601 kb on + strand, within MPMX19_06837at 103.602 kb on - strand, within MPMX19_06837at 103.602 kb on - strand, within MPMX19_06837

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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100,401 + +0.0
100,401 + +0.5
100,401 + +0.8
100,402 - -1.9
100,402 - -0.4
100,402 - +0.1
100,402 - +0.1
100,402 - -0.6
100,699 + MPMX19_06835 0.32 -0.3
100,861 + MPMX19_06835 0.64 -0.2
100,862 - MPMX19_06835 0.64 +0.8
100,862 - MPMX19_06835 0.64 -1.5
100,862 - MPMX19_06835 0.64 +0.5
100,862 - MPMX19_06835 0.64 +0.9
100,862 - MPMX19_06835 0.64 +1.2
100,862 - MPMX19_06835 0.64 -0.3
100,862 - MPMX19_06835 0.64 +0.7
100,862 - MPMX19_06835 0.64 -0.8
100,897 + MPMX19_06835 0.71 -0.8
100,897 + MPMX19_06835 0.71 +0.3
100,897 + MPMX19_06835 0.71 +0.5
100,897 + MPMX19_06835 0.71 -0.3
100,898 - MPMX19_06835 0.71 -0.1
100,898 - MPMX19_06835 0.71 -1.3
100,948 + MPMX19_06835 0.81 -0.5
100,948 + MPMX19_06835 0.81 -0.2
100,949 - MPMX19_06835 0.81 +0.1
100,949 - MPMX19_06835 0.81 -0.9
100,957 + MPMX19_06835 0.83 -0.1
100,957 + MPMX19_06835 0.83 +0.7
100,958 - MPMX19_06835 0.83 -1.3
100,958 - MPMX19_06835 0.83 +1.7
100,958 - MPMX19_06835 0.83 -0.2
100,958 - MPMX19_06835 0.83 -1.3
100,958 - MPMX19_06835 0.83 +0.6
100,958 - MPMX19_06835 0.83 -0.3
100,958 - MPMX19_06835 0.83 -1.5
100,958 - MPMX19_06835 0.83 -0.5
100,958 - MPMX19_06835 0.83 +0.4
100,958 - MPMX19_06835 0.83 +0.2
100,958 - MPMX19_06835 0.83 -1.6
100,958 - MPMX19_06835 0.83 +1.5
100,958 - MPMX19_06835 0.83 +0.6
100,958 - MPMX19_06835 0.83 +0.9
100,958 - MPMX19_06835 0.83 -0.1
101,044 + -0.5
101,045 - -0.8
101,045 - -0.8
101,125 - -1.5
101,134 - +1.2
101,134 - +0.5
101,169 - -1.0
101,265 + +0.8
101,265 + -1.1
101,266 - -0.9
101,266 - +1.5
101,266 - +0.4
101,556 + MPMX19_06836 0.25 -1.1
101,580 + MPMX19_06836 0.27 +0.5
101,580 + MPMX19_06836 0.27 -1.1
101,580 + MPMX19_06836 0.27 +1.3
101,581 - MPMX19_06836 0.27 +0.6
102,111 + MPMX19_06836 0.62 +0.4
102,111 + MPMX19_06836 0.62 +1.3
102,111 + MPMX19_06836 0.62 -0.8
102,111 + MPMX19_06836 0.62 -0.1
102,111 + MPMX19_06836 0.62 -0.3
102,111 + MPMX19_06836 0.62 -0.6
102,111 + MPMX19_06836 0.62 -0.5
102,111 + MPMX19_06836 0.62 -1.3
102,111 + MPMX19_06836 0.62 -0.7
102,111 + MPMX19_06836 0.62 -1.5
102,111 + MPMX19_06836 0.62 -1.2
102,112 - MPMX19_06836 0.62 -0.4
102,112 - MPMX19_06836 0.62 -2.2
102,112 - MPMX19_06836 0.62 -0.5
102,112 - MPMX19_06836 0.62 +0.1
102,112 - MPMX19_06836 0.62 +0.7
102,112 - MPMX19_06836 0.62 +0.0
102,112 - MPMX19_06836 0.62 +0.1
102,112 - MPMX19_06836 0.62 -2.5
102,112 - MPMX19_06836 0.62 -1.5
102,112 - MPMX19_06836 0.62 -1.8
102,112 - MPMX19_06836 0.62 -0.5
102,112 - MPMX19_06836 0.62 +1.2
102,112 - MPMX19_06836 0.62 +1.1
102,112 - MPMX19_06836 0.62 +0.2
102,112 - MPMX19_06836 0.62 -1.9
102,129 + MPMX19_06836 0.63 -0.9
102,129 + MPMX19_06836 0.63 -1.3
102,130 - MPMX19_06836 0.63 +0.3
102,130 - MPMX19_06836 0.63 +1.5
102,130 - MPMX19_06836 0.63 -3.4
102,130 - MPMX19_06836 0.63 -1.8
102,327 + MPMX19_06836 0.77 -0.7
102,327 + MPMX19_06836 0.77 -1.1
102,328 - MPMX19_06836 0.77 +0.2
102,328 - MPMX19_06836 0.77 -2.2
102,328 - MPMX19_06836 0.77 -0.6
102,459 + MPMX19_06836 0.85 +0.2
102,474 + MPMX19_06836 0.86 -0.4
102,528 + -0.5
102,654 + -2.2
102,654 + -1.9
102,655 - -1.6
102,655 - -0.1
102,655 - -0.1
102,655 - +0.5
102,655 - -0.2
102,655 - -0.4
102,655 - +0.8
102,655 - -1.3
102,655 - +0.4
102,655 - -0.8
102,655 - -0.8
102,845 + -1.3
102,845 + -0.6
102,846 - +0.2
102,846 - -0.7
102,846 - -2.4
102,846 - +1.7
102,846 - -0.5
102,896 + MPMX19_06837 0.13 +1.1
102,897 - MPMX19_06837 0.13 +0.5
102,897 - MPMX19_06837 0.13 +0.0
102,897 - MPMX19_06837 0.13 -1.3
102,897 - MPMX19_06837 0.13 +0.2
102,897 - MPMX19_06837 0.13 -1.8
102,897 - MPMX19_06837 0.13 -0.3
102,914 + MPMX19_06837 0.14 +0.8
102,968 + MPMX19_06837 0.18 -0.1
102,971 + MPMX19_06837 0.18 -1.0
102,971 + MPMX19_06837 0.18 +0.9
102,971 + MPMX19_06837 0.18 -0.4
102,971 + MPMX19_06837 0.18 -1.8
102,971 + MPMX19_06837 0.18 -1.2
102,972 - MPMX19_06837 0.18 -0.3
102,972 - MPMX19_06837 0.18 +0.8
102,972 - MPMX19_06837 0.18 -0.1
102,972 - MPMX19_06837 0.18 -0.1
102,980 + MPMX19_06837 0.19 -2.2
102,980 + MPMX19_06837 0.19 -0.3
102,981 - MPMX19_06837 0.19 +0.1
102,981 - MPMX19_06837 0.19 -0.2
102,981 - MPMX19_06837 0.19 +0.2
103,115 + MPMX19_06837 0.29 +0.7
103,115 + MPMX19_06837 0.29 +0.9
103,116 - MPMX19_06837 0.29 +0.7
103,118 + MPMX19_06837 0.29 -1.0
103,118 + MPMX19_06837 0.29 -0.1
103,118 + MPMX19_06837 0.29 -0.2
103,118 + MPMX19_06837 0.29 +0.2
103,118 + MPMX19_06837 0.29 -0.6
103,119 - MPMX19_06837 0.29 -0.4
103,175 + MPMX19_06837 0.33 -2.1
103,176 - MPMX19_06837 0.33 -0.6
103,277 + MPMX19_06837 0.40 +0.5
103,277 + MPMX19_06837 0.40 +1.2
103,278 - MPMX19_06837 0.41 +0.7
103,280 + MPMX19_06837 0.41 -1.3
103,280 + MPMX19_06837 0.41 -0.2
103,280 + MPMX19_06837 0.41 +0.6
103,280 + MPMX19_06837 0.41 -1.1
103,280 + MPMX19_06837 0.41 +1.1
103,281 - MPMX19_06837 0.41 -0.7
103,281 - MPMX19_06837 0.41 -1.2
103,281 - MPMX19_06837 0.41 -0.1
103,281 - MPMX19_06837 0.41 -0.2
103,551 - MPMX19_06837 0.60 +1.4
103,601 + MPMX19_06837 0.64 -1.8
103,601 + MPMX19_06837 0.64 -0.9
103,601 + MPMX19_06837 0.64 -0.0
103,601 + MPMX19_06837 0.64 +0.8
103,602 - MPMX19_06837 0.64 +0.2
103,602 - MPMX19_06837 0.64 +0.1

Or see this region's nucleotide sequence