Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06798

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06796 and MPMX19_06797 are separated by 14 nucleotidesMPMX19_06797 and MPMX19_06798 are separated by 17 nucleotidesMPMX19_06798 and MPMX19_06799 are separated by 59 nucleotidesMPMX19_06799 and MPMX19_06800 overlap by 4 nucleotides MPMX19_06796: MPMX19_06796 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 62,081 to 62,884 _06796 MPMX19_06797: MPMX19_06797 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 62,899 to 63,288 _06797 MPMX19_06798: MPMX19_06798 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 63,306 to 64,154 _06798 MPMX19_06799: MPMX19_06799 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 64,214 to 64,954 _06799 MPMX19_06800: MPMX19_06800 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 64,951 to 65,619 _06800 Position (kb) 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2at 62.308 kb on - strand, within MPMX19_06796at 62.308 kb on - strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.912 kb on + strandat 62.912 kb on + strandat 62.912 kb on + strandat 62.913 kb on - strandat 62.913 kb on - strandat 63.266 kb on + strandat 63.266 kb on + strandat 63.266 kb on + strandat 63.267 kb on - strandat 63.267 kb on - strandat 63.267 kb on - strandat 63.267 kb on - strandat 63.267 kb on - strandat 63.289 kb on - strandat 63.355 kb on + strandat 63.385 kb on + strandat 63.385 kb on + strandat 63.386 kb on - strandat 63.433 kb on + strand, within MPMX19_06798at 63.433 kb on + strand, within MPMX19_06798at 63.434 kb on - strand, within MPMX19_06798at 63.434 kb on - strand, within MPMX19_06798at 63.460 kb on + strand, within MPMX19_06798at 63.460 kb on + strand, within MPMX19_06798at 63.460 kb on + strand, within MPMX19_06798at 63.460 kb on + strand, within MPMX19_06798at 63.460 kb on + strand, within MPMX19_06798at 63.460 kb on + strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.565 kb on + strand, within MPMX19_06798at 63.565 kb on + strand, within MPMX19_06798at 63.566 kb on - strand, within MPMX19_06798at 63.566 kb on - strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.641 kb on - strand, within MPMX19_06798at 63.641 kb on - strand, within MPMX19_06798at 63.641 kb on - strand, within MPMX19_06798at 63.641 kb on - strand, within MPMX19_06798at 63.641 kb on - strand, within MPMX19_06798at 63.641 kb on - strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.781 kb on + strand, within MPMX19_06798at 63.781 kb on + strand, within MPMX19_06798at 63.881 kb on - strand, within MPMX19_06798at 63.886 kb on + strand, within MPMX19_06798at 63.928 kb on + strand, within MPMX19_06798at 63.928 kb on + strand, within MPMX19_06798at 63.929 kb on - strand, within MPMX19_06798at 63.929 kb on - strand, within MPMX19_06798at 64.105 kb on + strandat 64.105 kb on + strandat 64.105 kb on + strandat 64.105 kb on + strandat 64.105 kb on + strandat 64.106 kb on - strandat 64.106 kb on - strandat 64.106 kb on - strandat 64.106 kb on - strandat 64.106 kb on - strandat 64.106 kb on - strandat 64.359 kb on + strand, within MPMX19_06799at 64.360 kb on - strand, within MPMX19_06799at 64.540 kb on - strand, within MPMX19_06799at 64.542 kb on + strand, within MPMX19_06799at 64.542 kb on + strand, within MPMX19_06799at 64.542 kb on + strand, within MPMX19_06799at 64.542 kb on + strand, within MPMX19_06799at 64.543 kb on - strand, within MPMX19_06799at 64.543 kb on - strand, within MPMX19_06799at 64.543 kb on - strand, within MPMX19_06799at 64.543 kb on - strand, within MPMX19_06799at 64.554 kb on + strand, within MPMX19_06799at 64.554 kb on + strand, within MPMX19_06799at 64.555 kb on - strand, within MPMX19_06799at 64.569 kb on + strand, within MPMX19_06799at 64.569 kb on + strand, within MPMX19_06799at 64.570 kb on - strand, within MPMX19_06799at 64.570 kb on - strand, within MPMX19_06799at 64.570 kb on - strand, within MPMX19_06799at 64.605 kb on + strand, within MPMX19_06799at 64.606 kb on - strand, within MPMX19_06799at 64.668 kb on + strand, within MPMX19_06799at 64.669 kb on - strand, within MPMX19_06799at 64.669 kb on - strand, within MPMX19_06799at 64.669 kb on - strand, within MPMX19_06799at 64.669 kb on - strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.798 kb on - strand, within MPMX19_06799at 65.060 kb on - strand, within MPMX19_06800

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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62,308 - MPMX19_06796 0.28 +0.7
62,308 - MPMX19_06796 0.28 -0.1
62,487 + MPMX19_06796 0.50 -0.6
62,487 + MPMX19_06796 0.50 +0.8
62,487 + MPMX19_06796 0.50 -0.8
62,487 + MPMX19_06796 0.50 -0.2
62,487 + MPMX19_06796 0.50 +0.1
62,488 - MPMX19_06796 0.51 -0.6
62,488 - MPMX19_06796 0.51 -0.5
62,488 - MPMX19_06796 0.51 -0.6
62,488 - MPMX19_06796 0.51 -1.5
62,488 - MPMX19_06796 0.51 -2.3
62,488 - MPMX19_06796 0.51 -1.6
62,488 - MPMX19_06796 0.51 -0.8
62,488 - MPMX19_06796 0.51 -0.7
62,488 - MPMX19_06796 0.51 -1.9
62,488 - MPMX19_06796 0.51 -0.5
62,766 + MPMX19_06796 0.85 +1.7
62,766 + MPMX19_06796 0.85 +0.4
62,766 + MPMX19_06796 0.85 +1.5
62,766 + MPMX19_06796 0.85 -0.1
62,766 + MPMX19_06796 0.85 +1.2
62,766 + MPMX19_06796 0.85 -2.1
62,767 - MPMX19_06796 0.85 -0.7
62,767 - MPMX19_06796 0.85 +1.9
62,767 - MPMX19_06796 0.85 +0.4
62,767 - MPMX19_06796 0.85 -0.6
62,767 - MPMX19_06796 0.85 -0.4
62,912 + -0.3
62,912 + -1.3
62,912 + +0.2
62,913 - -0.7
62,913 - -0.2
63,266 + -0.5
63,266 + -0.2
63,266 + -0.1
63,267 - -0.8
63,267 - -0.6
63,267 - -0.4
63,267 - -0.4
63,267 - -0.5
63,289 - -0.7
63,355 + +0.2
63,385 + +0.2
63,385 + -0.2
63,386 - -0.5
63,433 + MPMX19_06798 0.15 +0.4
63,433 + MPMX19_06798 0.15 +0.1
63,434 - MPMX19_06798 0.15 -0.2
63,434 - MPMX19_06798 0.15 -1.3
63,460 + MPMX19_06798 0.18 +0.7
63,460 + MPMX19_06798 0.18 +0.4
63,460 + MPMX19_06798 0.18 +0.6
63,460 + MPMX19_06798 0.18 -0.8
63,460 + MPMX19_06798 0.18 -0.4
63,460 + MPMX19_06798 0.18 +0.0
63,461 - MPMX19_06798 0.18 -0.1
63,461 - MPMX19_06798 0.18 -0.4
63,461 - MPMX19_06798 0.18 -0.9
63,461 - MPMX19_06798 0.18 +0.1
63,461 - MPMX19_06798 0.18 -0.1
63,461 - MPMX19_06798 0.18 +1.1
63,461 - MPMX19_06798 0.18 +1.0
63,565 + MPMX19_06798 0.31 +2.4
63,565 + MPMX19_06798 0.31 +0.3
63,566 - MPMX19_06798 0.31 -0.4
63,566 - MPMX19_06798 0.31 -1.5
63,640 + MPMX19_06798 0.39 -0.6
63,640 + MPMX19_06798 0.39 +0.4
63,640 + MPMX19_06798 0.39 -1.6
63,640 + MPMX19_06798 0.39 +0.4
63,640 + MPMX19_06798 0.39 -0.3
63,640 + MPMX19_06798 0.39 +2.0
63,640 + MPMX19_06798 0.39 -0.5
63,641 - MPMX19_06798 0.39 -0.8
63,641 - MPMX19_06798 0.39 -0.4
63,641 - MPMX19_06798 0.39 -0.2
63,641 - MPMX19_06798 0.39 -0.7
63,641 - MPMX19_06798 0.39 +0.4
63,641 - MPMX19_06798 0.39 -0.1
63,757 + MPMX19_06798 0.53 -0.5
63,757 + MPMX19_06798 0.53 -0.5
63,757 + MPMX19_06798 0.53 +0.1
63,757 + MPMX19_06798 0.53 -0.4
63,757 + MPMX19_06798 0.53 +0.4
63,757 + MPMX19_06798 0.53 +1.8
63,757 + MPMX19_06798 0.53 +0.1
63,781 + MPMX19_06798 0.56 +0.4
63,781 + MPMX19_06798 0.56 +0.5
63,881 - MPMX19_06798 0.68 +1.0
63,886 + MPMX19_06798 0.68 +1.2
63,928 + MPMX19_06798 0.73 -1.5
63,928 + MPMX19_06798 0.73 -0.6
63,929 - MPMX19_06798 0.73 -1.3
63,929 - MPMX19_06798 0.73 -0.1
64,105 + +0.9
64,105 + -2.6
64,105 + +2.4
64,105 + -0.6
64,105 + +0.0
64,106 - -0.1
64,106 - -0.2
64,106 - -1.6
64,106 - +0.5
64,106 - -0.8
64,106 - +0.1
64,359 + MPMX19_06799 0.20 +0.3
64,360 - MPMX19_06799 0.20 +0.8
64,540 - MPMX19_06799 0.44 -0.5
64,542 + MPMX19_06799 0.44 -1.4
64,542 + MPMX19_06799 0.44 +0.5
64,542 + MPMX19_06799 0.44 -0.6
64,542 + MPMX19_06799 0.44 -0.1
64,543 - MPMX19_06799 0.44 -0.6
64,543 - MPMX19_06799 0.44 +0.6
64,543 - MPMX19_06799 0.44 +0.1
64,543 - MPMX19_06799 0.44 -0.6
64,554 + MPMX19_06799 0.46 +0.0
64,554 + MPMX19_06799 0.46 -0.8
64,555 - MPMX19_06799 0.46 -2.1
64,569 + MPMX19_06799 0.48 -1.1
64,569 + MPMX19_06799 0.48 -1.1
64,570 - MPMX19_06799 0.48 -1.5
64,570 - MPMX19_06799 0.48 -0.1
64,570 - MPMX19_06799 0.48 +0.1
64,605 + MPMX19_06799 0.53 -0.3
64,606 - MPMX19_06799 0.53 +0.5
64,668 + MPMX19_06799 0.61 -0.1
64,669 - MPMX19_06799 0.61 -0.2
64,669 - MPMX19_06799 0.61 +0.9
64,669 - MPMX19_06799 0.61 -0.0
64,669 - MPMX19_06799 0.61 +2.5
64,797 + MPMX19_06799 0.79 -2.2
64,797 + MPMX19_06799 0.79 -0.8
64,797 + MPMX19_06799 0.79 +0.3
64,797 + MPMX19_06799 0.79 +0.9
64,797 + MPMX19_06799 0.79 -0.3
64,798 - MPMX19_06799 0.79 -0.4
65,060 - MPMX19_06800 0.16 +0.1

Or see this region's nucleotide sequence