Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06794

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06792 and MPMX19_06793 are separated by 253 nucleotidesMPMX19_06793 and MPMX19_06794 are separated by 36 nucleotidesMPMX19_06794 and MPMX19_06795 are separated by 28 nucleotidesMPMX19_06795 and MPMX19_06796 are separated by 20 nucleotides MPMX19_06792: MPMX19_06792 - 2-hydroxymuconic semialdehyde dehydrogenase, at 57,421 to 58,944 _06792 MPMX19_06793: MPMX19_06793 - hypothetical protein, at 59,198 to 59,716 _06793 MPMX19_06794: MPMX19_06794 - Glutarate-semialdehyde dehydrogenase, at 59,753 to 61,207 _06794 MPMX19_06795: MPMX19_06795 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, at 61,236 to 62,060 _06795 MPMX19_06796: MPMX19_06796 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 62,081 to 62,884 _06796 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -2 -1 0 1at 59.142 kb on + strandat 59.142 kb on + strandat 59.143 kb on - strandat 59.239 kb on - strandat 59.239 kb on - strandat 59.603 kb on + strand, within MPMX19_06793at 59.714 kb on + strandat 59.715 kb on - strandat 59.754 kb on + strandat 59.755 kb on - strandat 59.775 kb on + strandat 59.775 kb on + strandat 59.775 kb on + strandat 59.775 kb on + strandat 59.775 kb on + strandat 59.776 kb on - strandat 59.776 kb on - strandat 59.790 kb on + strandat 59.790 kb on + strandat 59.790 kb on + strandat 59.790 kb on + strandat 59.790 kb on + strandat 59.791 kb on - strandat 59.956 kb on - strand, within MPMX19_06794at 59.956 kb on - strand, within MPMX19_06794at 59.956 kb on - strand, within MPMX19_06794at 59.956 kb on - strand, within MPMX19_06794at 59.971 kb on - strand, within MPMX19_06794at 60.300 kb on + strand, within MPMX19_06794at 60.300 kb on + strand, within MPMX19_06794at 60.300 kb on + strand, within MPMX19_06794at 60.300 kb on + strand, within MPMX19_06794at 60.300 kb on + strand, within MPMX19_06794at 60.300 kb on + strand, within MPMX19_06794at 60.301 kb on - strand, within MPMX19_06794at 60.301 kb on - strand, within MPMX19_06794at 60.301 kb on - strand, within MPMX19_06794at 60.301 kb on - strand, within MPMX19_06794at 60.301 kb on - strand, within MPMX19_06794at 60.301 kb on - strand, within MPMX19_06794at 60.361 kb on - strand, within MPMX19_06794at 60.825 kb on + strand, within MPMX19_06794at 60.825 kb on + strand, within MPMX19_06794at 60.825 kb on + strand, within MPMX19_06794at 60.825 kb on + strand, within MPMX19_06794at 60.826 kb on - strand, within MPMX19_06794at 60.826 kb on - strand, within MPMX19_06794at 60.826 kb on - strand, within MPMX19_06794at 60.862 kb on - strand, within MPMX19_06794at 60.862 kb on - strand, within MPMX19_06794at 61.215 kb on - strandat 61.241 kb on - strandat 61.387 kb on + strand, within MPMX19_06795at 61.388 kb on - strand, within MPMX19_06795at 61.661 kb on + strand, within MPMX19_06795at 61.975 kb on + strand, within MPMX19_06795at 61.975 kb on + strand, within MPMX19_06795at 61.976 kb on - strand, within MPMX19_06795at 61.976 kb on - strand, within MPMX19_06795at 62.082 kb on + strandat 62.083 kb on - strandat 62.083 kb on - strandat 62.083 kb on - strandat 62.118 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
59,142 + -0.5
59,142 + -0.3
59,143 - -1.2
59,239 - -1.6
59,239 - -1.0
59,603 + MPMX19_06793 0.78 +0.3
59,714 + -0.6
59,715 - +0.4
59,754 + -0.5
59,755 - -1.0
59,775 + +0.1
59,775 + +0.5
59,775 + -0.1
59,775 + -0.9
59,775 + +0.4
59,776 - -0.5
59,776 - -0.7
59,790 + -0.4
59,790 + +1.7
59,790 + +0.4
59,790 + +1.3
59,790 + +0.5
59,791 - +0.2
59,956 - MPMX19_06794 0.14 -1.0
59,956 - MPMX19_06794 0.14 +0.2
59,956 - MPMX19_06794 0.14 -0.8
59,956 - MPMX19_06794 0.14 -1.3
59,971 - MPMX19_06794 0.15 -0.2
60,300 + MPMX19_06794 0.38 -0.1
60,300 + MPMX19_06794 0.38 -0.2
60,300 + MPMX19_06794 0.38 -0.3
60,300 + MPMX19_06794 0.38 -0.3
60,300 + MPMX19_06794 0.38 -0.3
60,300 + MPMX19_06794 0.38 -0.1
60,301 - MPMX19_06794 0.38 +0.4
60,301 - MPMX19_06794 0.38 -0.3
60,301 - MPMX19_06794 0.38 -0.9
60,301 - MPMX19_06794 0.38 +0.2
60,301 - MPMX19_06794 0.38 -1.5
60,301 - MPMX19_06794 0.38 -0.6
60,361 - MPMX19_06794 0.42 +0.2
60,825 + MPMX19_06794 0.74 -0.6
60,825 + MPMX19_06794 0.74 -0.2
60,825 + MPMX19_06794 0.74 -2.5
60,825 + MPMX19_06794 0.74 -0.5
60,826 - MPMX19_06794 0.74 -0.9
60,826 - MPMX19_06794 0.74 +0.4
60,826 - MPMX19_06794 0.74 -0.6
60,862 - MPMX19_06794 0.76 -0.2
60,862 - MPMX19_06794 0.76 -1.0
61,215 - -0.1
61,241 - +0.3
61,387 + MPMX19_06795 0.18 +0.4
61,388 - MPMX19_06795 0.18 -0.5
61,661 + MPMX19_06795 0.52 +0.5
61,975 + MPMX19_06795 0.90 +0.4
61,975 + MPMX19_06795 0.90 +0.0
61,976 - MPMX19_06795 0.90 +0.8
61,976 - MPMX19_06795 0.90 -0.7
62,082 + -0.5
62,083 - -2.1
62,083 - +0.1
62,083 - -1.9
62,118 + -0.9

Or see this region's nucleotide sequence