Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06779

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06778 and MPMX19_06779 are separated by 136 nucleotidesMPMX19_06779 and MPMX19_06780 are separated by 86 nucleotidesMPMX19_06780 and MPMX19_06781 are separated by 107 nucleotides MPMX19_06778: MPMX19_06778 - HTH-type transcriptional regulator YhaJ, at 43,039 to 43,968 _06778 MPMX19_06779: MPMX19_06779 - Quercetin 2,3-dioxygenase, at 44,105 to 44,803 _06779 MPMX19_06780: MPMX19_06780 - Potassium channel, at 44,890 to 45,465 _06780 MPMX19_06781: MPMX19_06781 - hypothetical protein, at 45,573 to 45,803 _06781 Position (kb) 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.850 kb on + strand, within MPMX19_06778at 43.850 kb on + strand, within MPMX19_06778at 43.850 kb on + strand, within MPMX19_06778at 43.851 kb on - strand, within MPMX19_06778at 43.851 kb on - strand, within MPMX19_06778at 43.851 kb on - strand, within MPMX19_06778at 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.192 kb on + strand, within MPMX19_06779at 44.192 kb on + strand, within MPMX19_06779at 44.192 kb on + strand, within MPMX19_06779at 44.192 kb on + strand, within MPMX19_06779at 44.193 kb on - strand, within MPMX19_06779at 44.193 kb on - strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.357 kb on - strand, within MPMX19_06779at 44.636 kb on + strand, within MPMX19_06779at 44.637 kb on - strand, within MPMX19_06779at 44.663 kb on + strand, within MPMX19_06779at 44.663 kb on + strand, within MPMX19_06779at 44.664 kb on - strand, within MPMX19_06779at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.056 kb on - strand, within MPMX19_06780at 45.056 kb on - strand, within MPMX19_06780at 45.056 kb on - strand, within MPMX19_06780at 45.211 kb on + strand, within MPMX19_06780at 45.212 kb on - strand, within MPMX19_06780at 45.212 kb on - strand, within MPMX19_06780at 45.212 kb on - strand, within MPMX19_06780at 45.245 kb on - strand, within MPMX19_06780at 45.245 kb on - strand, within MPMX19_06780at 45.346 kb on + strand, within MPMX19_06780at 45.346 kb on + strand, within MPMX19_06780at 45.346 kb on + strand, within MPMX19_06780at 45.347 kb on - strand, within MPMX19_06780at 45.347 kb on - strand, within MPMX19_06780at 45.347 kb on - strand, within MPMX19_06780at 45.347 kb on - strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.402 kb on + strand, within MPMX19_06780at 45.403 kb on - strand, within MPMX19_06780at 45.541 kb on + strandat 45.541 kb on + strandat 45.541 kb on + strandat 45.541 kb on + strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
43,160 + MPMX19_06778 0.13 -1.8
43,160 + MPMX19_06778 0.13 +0.1
43,160 + MPMX19_06778 0.13 -0.5
43,160 + MPMX19_06778 0.13 -0.7
43,160 + MPMX19_06778 0.13 -1.8
43,160 + MPMX19_06778 0.13 +0.0
43,161 - MPMX19_06778 0.13 +0.8
43,161 - MPMX19_06778 0.13 +0.3
43,161 - MPMX19_06778 0.13 -0.1
43,161 - MPMX19_06778 0.13 +1.0
43,161 - MPMX19_06778 0.13 -0.1
43,850 + MPMX19_06778 0.87 -0.9
43,850 + MPMX19_06778 0.87 -0.5
43,850 + MPMX19_06778 0.87 -0.7
43,851 - MPMX19_06778 0.87 -0.1
43,851 - MPMX19_06778 0.87 +0.3
43,851 - MPMX19_06778 0.87 +0.0
44,032 + -0.2
44,032 + -0.1
44,032 + +0.0
44,032 + -2.3
44,032 + +0.8
44,032 + +0.8
44,032 + -1.6
44,033 - -1.5
44,033 - +1.3
44,033 - -0.6
44,033 - +0.7
44,033 - -0.2
44,033 - +0.4
44,033 - -2.8
44,033 - -0.2
44,033 - -0.8
44,189 + MPMX19_06779 0.12 -0.6
44,189 + MPMX19_06779 0.12 +1.8
44,189 + MPMX19_06779 0.12 -0.2
44,189 + MPMX19_06779 0.12 -0.8
44,189 + MPMX19_06779 0.12 -0.1
44,189 + MPMX19_06779 0.12 +0.6
44,189 + MPMX19_06779 0.12 -0.5
44,189 + MPMX19_06779 0.12 +0.4
44,190 - MPMX19_06779 0.12 -1.3
44,190 - MPMX19_06779 0.12 +0.2
44,190 - MPMX19_06779 0.12 -1.6
44,190 - MPMX19_06779 0.12 -0.5
44,190 - MPMX19_06779 0.12 -0.3
44,190 - MPMX19_06779 0.12 +0.7
44,190 - MPMX19_06779 0.12 -1.1
44,190 - MPMX19_06779 0.12 -1.1
44,192 + MPMX19_06779 0.12 -1.5
44,192 + MPMX19_06779 0.12 -0.1
44,192 + MPMX19_06779 0.12 -0.2
44,192 + MPMX19_06779 0.12 +1.3
44,193 - MPMX19_06779 0.13 -0.1
44,193 - MPMX19_06779 0.13 -0.3
44,303 + MPMX19_06779 0.28 -1.2
44,303 + MPMX19_06779 0.28 -1.0
44,303 + MPMX19_06779 0.28 +0.6
44,303 + MPMX19_06779 0.28 +1.3
44,303 + MPMX19_06779 0.28 +0.4
44,304 - MPMX19_06779 0.28 +1.0
44,304 - MPMX19_06779 0.28 -0.7
44,304 - MPMX19_06779 0.28 +0.7
44,304 - MPMX19_06779 0.28 +0.1
44,304 - MPMX19_06779 0.28 +0.1
44,304 - MPMX19_06779 0.28 +0.1
44,304 - MPMX19_06779 0.28 -0.0
44,304 - MPMX19_06779 0.28 -0.7
44,304 - MPMX19_06779 0.28 -0.6
44,357 - MPMX19_06779 0.36 +0.5
44,636 + MPMX19_06779 0.76 -0.6
44,637 - MPMX19_06779 0.76 -0.9
44,663 + MPMX19_06779 0.80 +1.9
44,663 + MPMX19_06779 0.80 +1.1
44,664 - MPMX19_06779 0.80 -0.3
45,025 + MPMX19_06780 0.23 -1.0
45,025 + MPMX19_06780 0.23 -1.0
45,025 + MPMX19_06780 0.23 +1.2
45,025 + MPMX19_06780 0.23 -0.8
45,025 + MPMX19_06780 0.23 -0.2
45,025 + MPMX19_06780 0.23 -0.1
45,025 + MPMX19_06780 0.23 -0.1
45,025 + MPMX19_06780 0.23 -1.5
45,025 + MPMX19_06780 0.23 -0.9
45,025 + MPMX19_06780 0.23 +0.3
45,025 + MPMX19_06780 0.23 -1.5
45,025 + MPMX19_06780 0.23 +1.0
45,026 - MPMX19_06780 0.24 -0.6
45,026 - MPMX19_06780 0.24 +0.8
45,026 - MPMX19_06780 0.24 -1.0
45,026 - MPMX19_06780 0.24 -1.9
45,026 - MPMX19_06780 0.24 -1.1
45,026 - MPMX19_06780 0.24 -0.3
45,026 - MPMX19_06780 0.24 -1.1
45,026 - MPMX19_06780 0.24 -1.3
45,026 - MPMX19_06780 0.24 -0.4
45,026 - MPMX19_06780 0.24 -0.4
45,026 - MPMX19_06780 0.24 +0.4
45,056 - MPMX19_06780 0.29 -0.3
45,056 - MPMX19_06780 0.29 +0.5
45,056 - MPMX19_06780 0.29 -0.4
45,211 + MPMX19_06780 0.56 -0.1
45,212 - MPMX19_06780 0.56 +0.7
45,212 - MPMX19_06780 0.56 -1.8
45,212 - MPMX19_06780 0.56 -0.1
45,245 - MPMX19_06780 0.62 +0.1
45,245 - MPMX19_06780 0.62 -0.3
45,346 + MPMX19_06780 0.79 +0.0
45,346 + MPMX19_06780 0.79 +0.8
45,346 + MPMX19_06780 0.79 +1.2
45,347 - MPMX19_06780 0.79 +1.9
45,347 - MPMX19_06780 0.79 +0.6
45,347 - MPMX19_06780 0.79 -0.3
45,347 - MPMX19_06780 0.79 -0.9
45,400 + MPMX19_06780 0.89 -0.2
45,400 + MPMX19_06780 0.89 -0.6
45,400 + MPMX19_06780 0.89 +0.0
45,400 + MPMX19_06780 0.89 -2.8
45,400 + MPMX19_06780 0.89 +0.4
45,400 + MPMX19_06780 0.89 +0.2
45,400 + MPMX19_06780 0.89 -1.1
45,400 + MPMX19_06780 0.89 -1.5
45,400 + MPMX19_06780 0.89 +0.3
45,400 + MPMX19_06780 0.89 -1.1
45,400 + MPMX19_06780 0.89 -1.1
45,400 + MPMX19_06780 0.89 +0.5
45,400 + MPMX19_06780 0.89 -0.9
45,401 - MPMX19_06780 0.89 -0.6
45,401 - MPMX19_06780 0.89 -1.8
45,401 - MPMX19_06780 0.89 -0.6
45,401 - MPMX19_06780 0.89 +0.5
45,401 - MPMX19_06780 0.89 -0.1
45,401 - MPMX19_06780 0.89 -0.8
45,401 - MPMX19_06780 0.89 -0.4
45,401 - MPMX19_06780 0.89 -0.8
45,401 - MPMX19_06780 0.89 +0.7
45,402 + MPMX19_06780 0.89 +0.7
45,403 - MPMX19_06780 0.89 -1.6
45,541 + +0.4
45,541 + -0.3
45,541 + -1.1
45,541 + -0.1
45,542 - -2.5
45,542 - -1.2
45,542 - -0.5
45,542 - -0.8
45,542 - +0.3
45,542 - -1.2
45,542 - -1.0
45,542 - +1.8
45,542 - -0.3

Or see this region's nucleotide sequence