Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06762

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06761 and MPMX19_06762 are separated by 120 nucleotidesMPMX19_06762 and MPMX19_06763 are separated by 88 nucleotides MPMX19_06761: MPMX19_06761 - HTH-type transcriptional regulator TauR, at 27,121 to 28,596 _06761 MPMX19_06762: MPMX19_06762 - Peptide deformylase, at 28,717 to 29,253 _06762 MPMX19_06763: MPMX19_06763 - hypothetical protein, at 29,342 to 30,259 _06763 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 27.851 kb on + strand, within MPMX19_06761at 27.851 kb on + strand, within MPMX19_06761at 27.851 kb on + strand, within MPMX19_06761at 27.851 kb on + strand, within MPMX19_06761at 27.851 kb on + strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.884 kb on + strand, within MPMX19_06761at 27.885 kb on - strand, within MPMX19_06761at 28.030 kb on + strand, within MPMX19_06761at 28.108 kb on + strand, within MPMX19_06761at 28.108 kb on + strand, within MPMX19_06761at 28.108 kb on + strand, within MPMX19_06761at 28.109 kb on - strand, within MPMX19_06761at 28.109 kb on - strand, within MPMX19_06761at 28.480 kb on - strandat 28.513 kb on + strandat 28.566 kb on - strandat 28.566 kb on - strandat 28.649 kb on + strandat 28.649 kb on + strandat 28.650 kb on - strandat 28.650 kb on - strandat 28.650 kb on - strandat 28.650 kb on - strandat 28.650 kb on - strandat 28.805 kb on + strand, within MPMX19_06762at 28.908 kb on - strand, within MPMX19_06762at 28.908 kb on - strand, within MPMX19_06762at 28.908 kb on - strand, within MPMX19_06762at 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.416 kb on - strandat 29.416 kb on - strandat 29.416 kb on - strandat 29.416 kb on - strandat 29.535 kb on + strand, within MPMX19_06763at 29.535 kb on + strand, within MPMX19_06763at 29.572 kb on - strand, within MPMX19_06763at 29.709 kb on + strand, within MPMX19_06763at 29.710 kb on - strand, within MPMX19_06763at 29.742 kb on + strand, within MPMX19_06763at 29.742 kb on + strand, within MPMX19_06763at 29.742 kb on + strand, within MPMX19_06763at 29.743 kb on - strand, within MPMX19_06763at 29.919 kb on + strand, within MPMX19_06763at 29.920 kb on - strand, within MPMX19_06763at 30.090 kb on + strand, within MPMX19_06763at 30.091 kb on - strand, within MPMX19_06763at 30.091 kb on - strand, within MPMX19_06763

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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27,851 + MPMX19_06761 0.49 -2.2
27,851 + MPMX19_06761 0.49 -0.9
27,851 + MPMX19_06761 0.49 -0.6
27,851 + MPMX19_06761 0.49 -1.3
27,851 + MPMX19_06761 0.49 +0.7
27,852 - MPMX19_06761 0.50 -0.5
27,852 - MPMX19_06761 0.50 +0.8
27,852 - MPMX19_06761 0.50 -0.6
27,852 - MPMX19_06761 0.50 +0.5
27,852 - MPMX19_06761 0.50 +0.3
27,852 - MPMX19_06761 0.50 +0.9
27,852 - MPMX19_06761 0.50 -0.7
27,852 - MPMX19_06761 0.50 -1.6
27,884 + MPMX19_06761 0.52 -0.4
27,885 - MPMX19_06761 0.52 -0.3
28,030 + MPMX19_06761 0.62 -1.1
28,108 + MPMX19_06761 0.67 -0.2
28,108 + MPMX19_06761 0.67 +0.4
28,108 + MPMX19_06761 0.67 +0.1
28,109 - MPMX19_06761 0.67 +0.3
28,109 - MPMX19_06761 0.67 -2.3
28,480 - -2.2
28,513 + -2.1
28,566 - -0.1
28,566 - -0.8
28,649 + +0.9
28,649 + -0.3
28,650 - -0.1
28,650 - -0.1
28,650 - -1.5
28,650 - -0.1
28,650 - +0.1
28,805 + MPMX19_06762 0.16 -1.3
28,908 - MPMX19_06762 0.36 +0.5
28,908 - MPMX19_06762 0.36 -0.6
28,908 - MPMX19_06762 0.36 -0.5
29,415 + +0.1
29,415 + +0.1
29,415 + -1.5
29,415 + +0.4
29,415 + -0.6
29,415 + -1.4
29,415 + -1.1
29,416 - -0.5
29,416 - -0.3
29,416 - +0.4
29,416 - -0.1
29,535 + MPMX19_06763 0.21 -0.2
29,535 + MPMX19_06763 0.21 +1.8
29,572 - MPMX19_06763 0.25 +0.4
29,709 + MPMX19_06763 0.40 -0.5
29,710 - MPMX19_06763 0.40 -0.3
29,742 + MPMX19_06763 0.44 -0.8
29,742 + MPMX19_06763 0.44 -1.3
29,742 + MPMX19_06763 0.44 -1.5
29,743 - MPMX19_06763 0.44 +0.0
29,919 + MPMX19_06763 0.63 +0.6
29,920 - MPMX19_06763 0.63 -0.5
30,090 + MPMX19_06763 0.81 +0.5
30,091 - MPMX19_06763 0.82 +0.3
30,091 - MPMX19_06763 0.82 +0.3

Or see this region's nucleotide sequence