Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06536

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06535 and MPMX19_06536 are separated by 135 nucleotidesMPMX19_06536 and MPMX19_06537 are separated by 140 nucleotidesMPMX19_06537 and MPMX19_06538 are separated by 144 nucleotides MPMX19_06535: MPMX19_06535 - hypothetical protein, at 322,687 to 323,856 _06535 MPMX19_06536: MPMX19_06536 - Inner membrane amino-acid ABC transporter permease protein YhdY, at 323,992 to 324,927 _06536 MPMX19_06537: MPMX19_06537 - NADH-dependent FMN reductase SfnF, at 325,068 to 325,625 _06537 MPMX19_06538: MPMX19_06538 - hypothetical protein, at 325,770 to 325,943 _06538 Position (kb) 323 324 325Strain fitness (log2 ratio) -2 -1 0 1 2at 323.057 kb on + strand, within MPMX19_06535at 323.058 kb on - strand, within MPMX19_06535at 323.066 kb on - strand, within MPMX19_06535at 323.066 kb on - strand, within MPMX19_06535at 323.066 kb on - strand, within MPMX19_06535at 323.066 kb on - strand, within MPMX19_06535at 323.066 kb on - strand, within MPMX19_06535at 323.066 kb on - strand, within MPMX19_06535at 323.066 kb on - strand, within MPMX19_06535at 323.822 kb on - strandat 323.822 kb on - strandat 323.822 kb on - strandat 323.822 kb on - strandat 323.945 kb on + strandat 323.946 kb on - strandat 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.103 kb on + strand, within MPMX19_06536at 324.121 kb on + strand, within MPMX19_06536at 324.121 kb on + strand, within MPMX19_06536at 324.572 kb on - strand, within MPMX19_06536at 324.622 kb on + strand, within MPMX19_06536at 324.622 kb on + strand, within MPMX19_06536at 324.622 kb on + strand, within MPMX19_06536at 324.622 kb on + strand, within MPMX19_06536at 324.829 kb on + strand, within MPMX19_06536at 324.829 kb on + strand, within MPMX19_06536at 324.829 kb on + strand, within MPMX19_06536at 324.829 kb on + strand, within MPMX19_06536at 324.829 kb on + strand, within MPMX19_06536at 324.829 kb on + strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.830 kb on - strand, within MPMX19_06536at 324.862 kb on + strandat 324.862 kb on + strandat 324.862 kb on + strandat 324.863 kb on - strandat 325.040 kb on + strandat 325.040 kb on + strandat 325.040 kb on + strandat 325.040 kb on + strandat 325.040 kb on + strandat 325.041 kb on - strandat 325.041 kb on - strandat 325.041 kb on - strandat 325.041 kb on - strandat 325.041 kb on - strandat 325.041 kb on - strandat 325.041 kb on - strandat 325.308 kb on + strand, within MPMX19_06537at 325.308 kb on + strand, within MPMX19_06537at 325.308 kb on + strand, within MPMX19_06537at 325.309 kb on - strand, within MPMX19_06537at 325.309 kb on - strand, within MPMX19_06537at 325.309 kb on - strand, within MPMX19_06537at 325.309 kb on - strand, within MPMX19_06537at 325.309 kb on - strand, within MPMX19_06537at 325.309 kb on - strand, within MPMX19_06537at 325.320 kb on + strand, within MPMX19_06537at 325.320 kb on + strand, within MPMX19_06537at 325.320 kb on + strand, within MPMX19_06537at 325.320 kb on + strand, within MPMX19_06537at 325.321 kb on - strand, within MPMX19_06537at 325.321 kb on - strand, within MPMX19_06537at 325.321 kb on - strand, within MPMX19_06537at 325.321 kb on - strand, within MPMX19_06537at 325.359 kb on + strand, within MPMX19_06537at 325.390 kb on + strand, within MPMX19_06537at 325.474 kb on + strand, within MPMX19_06537at 325.475 kb on - strand, within MPMX19_06537at 325.475 kb on - strand, within MPMX19_06537at 325.475 kb on - strand, within MPMX19_06537at 325.491 kb on + strand, within MPMX19_06537at 325.491 kb on + strand, within MPMX19_06537at 325.491 kb on + strand, within MPMX19_06537at 325.491 kb on + strand, within MPMX19_06537at 325.491 kb on + strand, within MPMX19_06537at 325.492 kb on - strand, within MPMX19_06537at 325.492 kb on - strand, within MPMX19_06537at 325.492 kb on - strand, within MPMX19_06537at 325.623 kb on + strandat 325.623 kb on + strandat 325.624 kb on - strandat 325.624 kb on - strandat 325.695 kb on - strandat 325.717 kb on - strandat 325.722 kb on + strandat 325.722 kb on + strandat 325.722 kb on + strandat 325.723 kb on - strandat 325.784 kb on + strandat 325.784 kb on + strandat 325.784 kb on + strandat 325.785 kb on - strandat 325.785 kb on - strandat 325.785 kb on - strandat 325.785 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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323,057 + MPMX19_06535 0.32 -0.1
323,058 - MPMX19_06535 0.32 +0.2
323,066 - MPMX19_06535 0.32 +0.1
323,066 - MPMX19_06535 0.32 -0.7
323,066 - MPMX19_06535 0.32 -1.5
323,066 - MPMX19_06535 0.32 +0.1
323,066 - MPMX19_06535 0.32 -0.5
323,066 - MPMX19_06535 0.32 -1.7
323,066 - MPMX19_06535 0.32 -0.8
323,822 - -0.2
323,822 - -0.5
323,822 - +0.0
323,822 - -1.3
323,945 + +0.9
323,946 - -0.1
324,103 + MPMX19_06536 0.12 +0.0
324,103 + MPMX19_06536 0.12 -0.7
324,103 + MPMX19_06536 0.12 -0.0
324,103 + MPMX19_06536 0.12 -0.3
324,103 + MPMX19_06536 0.12 -1.8
324,103 + MPMX19_06536 0.12 -0.1
324,103 + MPMX19_06536 0.12 +0.1
324,103 + MPMX19_06536 0.12 -0.0
324,103 + MPMX19_06536 0.12 +0.3
324,121 + MPMX19_06536 0.14 -2.3
324,121 + MPMX19_06536 0.14 -0.3
324,572 - MPMX19_06536 0.62 +1.1
324,622 + MPMX19_06536 0.67 +1.4
324,622 + MPMX19_06536 0.67 -2.3
324,622 + MPMX19_06536 0.67 +0.1
324,622 + MPMX19_06536 0.67 +0.0
324,829 + MPMX19_06536 0.89 -2.2
324,829 + MPMX19_06536 0.89 -0.8
324,829 + MPMX19_06536 0.89 -0.8
324,829 + MPMX19_06536 0.89 -1.9
324,829 + MPMX19_06536 0.89 +0.4
324,829 + MPMX19_06536 0.89 -1.3
324,830 - MPMX19_06536 0.90 -0.0
324,830 - MPMX19_06536 0.90 -0.9
324,830 - MPMX19_06536 0.90 -0.5
324,830 - MPMX19_06536 0.90 -0.3
324,830 - MPMX19_06536 0.90 +0.5
324,830 - MPMX19_06536 0.90 +1.0
324,830 - MPMX19_06536 0.90 +0.7
324,830 - MPMX19_06536 0.90 -0.4
324,862 + +0.2
324,862 + +0.4
324,862 + -0.0
324,863 - +0.4
325,040 + -0.8
325,040 + -0.1
325,040 + -0.5
325,040 + -0.1
325,040 + +0.1
325,041 - +0.3
325,041 - -2.0
325,041 - -0.5
325,041 - +0.1
325,041 - +0.5
325,041 - -0.1
325,041 - +1.4
325,308 + MPMX19_06537 0.43 +2.4
325,308 + MPMX19_06537 0.43 -0.4
325,308 + MPMX19_06537 0.43 -2.1
325,309 - MPMX19_06537 0.43 +0.1
325,309 - MPMX19_06537 0.43 -0.7
325,309 - MPMX19_06537 0.43 -0.5
325,309 - MPMX19_06537 0.43 +0.4
325,309 - MPMX19_06537 0.43 -0.1
325,309 - MPMX19_06537 0.43 -0.3
325,320 + MPMX19_06537 0.45 -0.8
325,320 + MPMX19_06537 0.45 +0.5
325,320 + MPMX19_06537 0.45 -0.3
325,320 + MPMX19_06537 0.45 +1.3
325,321 - MPMX19_06537 0.45 -1.8
325,321 - MPMX19_06537 0.45 -0.1
325,321 - MPMX19_06537 0.45 -0.3
325,321 - MPMX19_06537 0.45 -0.7
325,359 + MPMX19_06537 0.52 +0.4
325,390 + MPMX19_06537 0.58 +0.6
325,474 + MPMX19_06537 0.73 -0.0
325,475 - MPMX19_06537 0.73 +0.9
325,475 - MPMX19_06537 0.73 -0.9
325,475 - MPMX19_06537 0.73 -0.3
325,491 + MPMX19_06537 0.76 +0.6
325,491 + MPMX19_06537 0.76 +0.5
325,491 + MPMX19_06537 0.76 +2.0
325,491 + MPMX19_06537 0.76 +0.7
325,491 + MPMX19_06537 0.76 -0.8
325,492 - MPMX19_06537 0.76 -0.8
325,492 - MPMX19_06537 0.76 -1.8
325,492 - MPMX19_06537 0.76 -1.1
325,623 + +0.0
325,623 + -1.6
325,624 - +0.4
325,624 - -1.0
325,695 - +2.7
325,717 - -0.6
325,722 + +1.9
325,722 + -1.3
325,722 + -1.0
325,723 - +0.4
325,784 + -0.2
325,784 + +1.4
325,784 + -0.4
325,785 - -1.0
325,785 - -0.6
325,785 - +0.1
325,785 - -1.4

Or see this region's nucleotide sequence