Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06534 and MPMX19_06535 are separated by 8 nucleotides MPMX19_06535 and MPMX19_06536 are separated by 135 nucleotides
MPMX19_06534: MPMX19_06534 - Putative amino-acid ABC transporter-binding protein YhdW, at 321,608 to 322,678
_06534
MPMX19_06535: MPMX19_06535 - hypothetical protein, at 322,687 to 323,856
_06535
MPMX19_06536: MPMX19_06536 - Inner membrane amino-acid ABC transporter permease protein YhdY, at 323,992 to 324,927
_06536
Position (kb) 322
323
324 Strain fitness (log2 ratio) -2
-1
0
1 at 322.050 kb on + strand, within MPMX19_06534 at 322.298 kb on + strand, within MPMX19_06534 at 322.298 kb on + strand, within MPMX19_06534 at 322.298 kb on + strand, within MPMX19_06534 at 322.538 kb on + strand, within MPMX19_06534 at 322.538 kb on + strand, within MPMX19_06534 at 322.566 kb on - strand, within MPMX19_06534 at 322.566 kb on - strand, within MPMX19_06534 at 322.658 kb on + strand at 322.658 kb on + strand at 323.057 kb on + strand, within MPMX19_06535 at 323.058 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.822 kb on - strand at 323.822 kb on - strand at 323.822 kb on - strand at 323.822 kb on - strand at 323.945 kb on + strand at 323.946 kb on - strand at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.121 kb on + strand, within MPMX19_06536 at 324.121 kb on + strand, within MPMX19_06536 at 324.572 kb on - strand, within MPMX19_06536 at 324.622 kb on + strand, within MPMX19_06536 at 324.622 kb on + strand, within MPMX19_06536 at 324.622 kb on + strand, within MPMX19_06536 at 324.622 kb on + strand, within MPMX19_06536 at 324.829 kb on + strand, within MPMX19_06536 at 324.829 kb on + strand, within MPMX19_06536 at 324.829 kb on + strand, within MPMX19_06536 at 324.829 kb on + strand, within MPMX19_06536 at 324.829 kb on + strand, within MPMX19_06536 at 324.829 kb on + strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 322,050 + MPMX19_06534 0.41 +0.1 322,298 + MPMX19_06534 0.64 -0.5 322,298 + MPMX19_06534 0.64 -0.5 322,298 + MPMX19_06534 0.64 -0.2 322,538 + MPMX19_06534 0.87 -0.8 322,538 + MPMX19_06534 0.87 -1.3 322,566 - MPMX19_06534 0.89 +0.8 322,566 - MPMX19_06534 0.89 +0.3 322,658 + +0.2 322,658 + -1.4 323,057 + MPMX19_06535 0.32 -0.1 323,058 - MPMX19_06535 0.32 +0.2 323,066 - MPMX19_06535 0.32 +0.1 323,066 - MPMX19_06535 0.32 -0.7 323,066 - MPMX19_06535 0.32 -1.5 323,066 - MPMX19_06535 0.32 +0.1 323,066 - MPMX19_06535 0.32 -0.5 323,066 - MPMX19_06535 0.32 -1.7 323,066 - MPMX19_06535 0.32 -0.8 323,822 - -0.2 323,822 - -0.5 323,822 - +0.0 323,822 - -1.3 323,945 + +0.9 323,946 - -0.1 324,103 + MPMX19_06536 0.12 +0.0 324,103 + MPMX19_06536 0.12 -0.7 324,103 + MPMX19_06536 0.12 -0.0 324,103 + MPMX19_06536 0.12 -0.3 324,103 + MPMX19_06536 0.12 -1.8 324,103 + MPMX19_06536 0.12 -0.1 324,103 + MPMX19_06536 0.12 +0.1 324,103 + MPMX19_06536 0.12 -0.0 324,103 + MPMX19_06536 0.12 +0.3 324,121 + MPMX19_06536 0.14 -2.3 324,121 + MPMX19_06536 0.14 -0.3 324,572 - MPMX19_06536 0.62 +1.1 324,622 + MPMX19_06536 0.67 +1.4 324,622 + MPMX19_06536 0.67 -2.3 324,622 + MPMX19_06536 0.67 +0.1 324,622 + MPMX19_06536 0.67 +0.0 324,829 + MPMX19_06536 0.89 -2.2 324,829 + MPMX19_06536 0.89 -0.8 324,829 + MPMX19_06536 0.89 -0.8 324,829 + MPMX19_06536 0.89 -1.9 324,829 + MPMX19_06536 0.89 +0.4 324,829 + MPMX19_06536 0.89 -1.3 324,830 - MPMX19_06536 0.90 -0.0 324,830 - MPMX19_06536 0.90 -0.9 324,830 - MPMX19_06536 0.90 -0.5 324,830 - MPMX19_06536 0.90 -0.3 324,830 - MPMX19_06536 0.90 +0.5 324,830 - MPMX19_06536 0.90 +1.0 324,830 - MPMX19_06536 0.90 +0.7 324,830 - MPMX19_06536 0.90 -0.4
Or see this region's nucleotide sequence