Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06518 and MPMX19_06519 are separated by 31 nucleotides MPMX19_06519 and MPMX19_06520 are separated by 204 nucleotides MPMX19_06520 and MPMX19_06521 are separated by 51 nucleotides
MPMX19_06518: MPMX19_06518 - Methionine import system permease protein MetP, at 303,677 to 304,333
_06518
MPMX19_06519: MPMX19_06519 - HTH-type transcriptional repressor NagR, at 304,365 to 305,084
_06519
MPMX19_06520: MPMX19_06520 - Nitrate import ATP-binding protein NrtC, at 305,289 to 306,131
_06520
MPMX19_06521: MPMX19_06521 - Putative aliphatic sulfonates-binding protein, at 306,183 to 307,202
_06521
Position (kb) 305
306
307 Strain fitness (log2 ratio) -2
-1
0
1 at 304.367 kb on - strand at 304.399 kb on + strand at 304.597 kb on + strand, within MPMX19_06519 at 304.597 kb on + strand, within MPMX19_06519 at 304.597 kb on + strand, within MPMX19_06519 at 304.597 kb on + strand, within MPMX19_06519 at 305.050 kb on + strand at 305.050 kb on + strand at 305.177 kb on + strand at 305.178 kb on - strand at 305.178 kb on - strand at 305.403 kb on + strand, within MPMX19_06520 at 305.404 kb on - strand, within MPMX19_06520 at 305.595 kb on + strand, within MPMX19_06520 at 305.595 kb on + strand, within MPMX19_06520 at 305.596 kb on - strand, within MPMX19_06520 at 305.596 kb on - strand, within MPMX19_06520 at 305.596 kb on - strand, within MPMX19_06520 at 305.705 kb on + strand, within MPMX19_06520 at 305.706 kb on - strand, within MPMX19_06520 at 306.223 kb on - strand at 306.223 kb on - strand at 306.223 kb on - strand at 306.357 kb on + strand, within MPMX19_06521 at 306.357 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.471 kb on + strand, within MPMX19_06521 at 306.471 kb on + strand, within MPMX19_06521 at 306.522 kb on + strand, within MPMX19_06521 at 306.522 kb on + strand, within MPMX19_06521 at 306.523 kb on - strand, within MPMX19_06521 at 306.843 kb on + strand, within MPMX19_06521 at 306.843 kb on + strand, within MPMX19_06521
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 304,367 - +1.0 304,399 + -0.6 304,597 + MPMX19_06519 0.32 -0.9 304,597 + MPMX19_06519 0.32 -0.1 304,597 + MPMX19_06519 0.32 +0.8 304,597 + MPMX19_06519 0.32 +1.1 305,050 + -1.5 305,050 + +0.9 305,177 + +1.0 305,178 - -0.1 305,178 - +0.9 305,403 + MPMX19_06520 0.14 +1.2 305,404 - MPMX19_06520 0.14 -0.7 305,595 + MPMX19_06520 0.36 -0.5 305,595 + MPMX19_06520 0.36 -0.5 305,596 - MPMX19_06520 0.36 -1.9 305,596 - MPMX19_06520 0.36 -1.2 305,596 - MPMX19_06520 0.36 -1.6 305,705 + MPMX19_06520 0.49 +0.1 305,706 - MPMX19_06520 0.49 +0.7 306,223 - -1.1 306,223 - -0.9 306,223 - +0.0 306,357 + MPMX19_06521 0.17 +0.5 306,357 + MPMX19_06521 0.17 -0.2 306,450 + MPMX19_06521 0.26 +0.7 306,450 + MPMX19_06521 0.26 -0.6 306,450 + MPMX19_06521 0.26 -0.8 306,450 + MPMX19_06521 0.26 -0.1 306,450 + MPMX19_06521 0.26 +0.4 306,450 + MPMX19_06521 0.26 -0.9 306,450 + MPMX19_06521 0.26 -0.2 306,450 + MPMX19_06521 0.26 +0.6 306,450 + MPMX19_06521 0.26 +0.2 306,471 + MPMX19_06521 0.28 +1.1 306,471 + MPMX19_06521 0.28 +1.2 306,522 + MPMX19_06521 0.33 +0.6 306,522 + MPMX19_06521 0.33 -0.3 306,523 - MPMX19_06521 0.33 -0.2 306,843 + MPMX19_06521 0.65 +0.0 306,843 + MPMX19_06521 0.65 -1.8
Or see this region's nucleotide sequence