Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06515

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06514 and MPMX19_06515 overlap by 4 nucleotidesMPMX19_06515 and MPMX19_06516 are separated by 30 nucleotidesMPMX19_06516 and MPMX19_06517 are separated by 51 nucleotides MPMX19_06514: MPMX19_06514 - L-methionine gamma-lyase, at 299,870 to 301,123 _06514 MPMX19_06515: MPMX19_06515 - hypothetical protein, at 301,120 to 301,668 _06515 MPMX19_06516: MPMX19_06516 - D-methionine-binding lipoprotein MetQ, at 301,699 to 302,526 _06516 MPMX19_06517: MPMX19_06517 - Vitamin B12 import ATP-binding protein BtuD, at 302,578 to 303,696 _06517 Position (kb) 301 302Strain fitness (log2 ratio) -2 -1 0 1 2at 300.233 kb on + strand, within MPMX19_06514at 300.233 kb on + strand, within MPMX19_06514at 300.233 kb on + strand, within MPMX19_06514at 300.233 kb on + strand, within MPMX19_06514at 300.234 kb on - strand, within MPMX19_06514at 300.234 kb on - strand, within MPMX19_06514at 300.234 kb on - strand, within MPMX19_06514at 300.602 kb on + strand, within MPMX19_06514at 300.603 kb on - strand, within MPMX19_06514at 300.603 kb on - strand, within MPMX19_06514at 300.956 kb on + strand, within MPMX19_06514at 300.956 kb on + strand, within MPMX19_06514at 300.956 kb on + strand, within MPMX19_06514at 300.957 kb on - strand, within MPMX19_06514at 300.957 kb on - strand, within MPMX19_06514at 300.957 kb on - strand, within MPMX19_06514at 301.138 kb on + strandat 301.138 kb on + strandat 301.139 kb on - strandat 301.139 kb on - strandat 301.139 kb on - strandat 301.139 kb on - strandat 301.139 kb on - strandat 301.139 kb on - strandat 301.313 kb on - strand, within MPMX19_06515at 301.479 kb on + strand, within MPMX19_06515at 301.479 kb on + strand, within MPMX19_06515at 301.479 kb on + strand, within MPMX19_06515at 301.480 kb on - strand, within MPMX19_06515at 301.489 kb on + strand, within MPMX19_06515at 301.489 kb on + strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.715 kb on + strandat 301.715 kb on + strandat 301.716 kb on - strandat 301.968 kb on + strand, within MPMX19_06516at 301.968 kb on + strand, within MPMX19_06516at 301.969 kb on - strand, within MPMX19_06516at 301.969 kb on - strand, within MPMX19_06516at 302.005 kb on + strand, within MPMX19_06516at 302.006 kb on - strand, within MPMX19_06516at 302.006 kb on - strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.053 kb on + strand, within MPMX19_06516at 302.053 kb on + strand, within MPMX19_06516at 302.054 kb on - strand, within MPMX19_06516at 302.054 kb on - strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.194 kb on + strand, within MPMX19_06516at 302.194 kb on + strand, within MPMX19_06516at 302.195 kb on - strand, within MPMX19_06516at 302.284 kb on + strand, within MPMX19_06516at 302.284 kb on + strand, within MPMX19_06516at 302.284 kb on + strand, within MPMX19_06516at 302.284 kb on + strand, within MPMX19_06516at 302.285 kb on - strand, within MPMX19_06516at 302.285 kb on - strand, within MPMX19_06516at 302.568 kb on + strandat 302.568 kb on + strandat 302.568 kb on + strandat 302.569 kb on - strandat 302.569 kb on - strandat 302.604 kb on + strandat 302.604 kb on + strandat 302.605 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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300,233 + MPMX19_06514 0.29 +0.3
300,233 + MPMX19_06514 0.29 +0.5
300,233 + MPMX19_06514 0.29 +0.2
300,233 + MPMX19_06514 0.29 -1.5
300,234 - MPMX19_06514 0.29 -1.1
300,234 - MPMX19_06514 0.29 -1.9
300,234 - MPMX19_06514 0.29 -0.8
300,602 + MPMX19_06514 0.58 -0.4
300,603 - MPMX19_06514 0.58 +0.1
300,603 - MPMX19_06514 0.58 -1.6
300,956 + MPMX19_06514 0.87 +1.5
300,956 + MPMX19_06514 0.87 +0.3
300,956 + MPMX19_06514 0.87 -2.2
300,957 - MPMX19_06514 0.87 -0.7
300,957 - MPMX19_06514 0.87 +1.0
300,957 - MPMX19_06514 0.87 +0.3
301,138 + +1.3
301,138 + +0.3
301,139 - +1.1
301,139 - +0.7
301,139 - -0.0
301,139 - +0.1
301,139 - -0.7
301,139 - -1.0
301,313 - MPMX19_06515 0.35 -0.8
301,479 + MPMX19_06515 0.65 +0.6
301,479 + MPMX19_06515 0.65 +1.4
301,479 + MPMX19_06515 0.65 +0.3
301,480 - MPMX19_06515 0.66 -1.3
301,489 + MPMX19_06515 0.67 +1.7
301,489 + MPMX19_06515 0.67 +0.5
301,508 - MPMX19_06515 0.71 -0.1
301,508 - MPMX19_06515 0.71 +0.2
301,508 - MPMX19_06515 0.71 +2.7
301,508 - MPMX19_06515 0.71 -2.4
301,508 - MPMX19_06515 0.71 -0.6
301,508 - MPMX19_06515 0.71 -0.0
301,508 - MPMX19_06515 0.71 +0.4
301,715 + -0.8
301,715 + +1.4
301,716 - -0.6
301,968 + MPMX19_06516 0.32 +0.8
301,968 + MPMX19_06516 0.32 +0.1
301,969 - MPMX19_06516 0.33 -0.1
301,969 - MPMX19_06516 0.33 -0.6
302,005 + MPMX19_06516 0.37 -0.4
302,006 - MPMX19_06516 0.37 +0.1
302,006 - MPMX19_06516 0.37 -0.3
302,032 + MPMX19_06516 0.40 -1.1
302,032 + MPMX19_06516 0.40 +1.0
302,032 + MPMX19_06516 0.40 -0.3
302,032 + MPMX19_06516 0.40 +0.7
302,032 + MPMX19_06516 0.40 +0.5
302,032 + MPMX19_06516 0.40 -1.9
302,032 + MPMX19_06516 0.40 +0.3
302,032 + MPMX19_06516 0.40 +1.3
302,032 + MPMX19_06516 0.40 -1.1
302,032 + MPMX19_06516 0.40 -0.1
302,032 + MPMX19_06516 0.40 -0.3
302,032 + MPMX19_06516 0.40 +0.9
302,033 - MPMX19_06516 0.40 -0.4
302,033 - MPMX19_06516 0.40 -0.1
302,033 - MPMX19_06516 0.40 +0.5
302,033 - MPMX19_06516 0.40 +0.7
302,033 - MPMX19_06516 0.40 +0.7
302,033 - MPMX19_06516 0.40 -0.6
302,033 - MPMX19_06516 0.40 -0.9
302,033 - MPMX19_06516 0.40 -0.7
302,033 - MPMX19_06516 0.40 -2.0
302,033 - MPMX19_06516 0.40 -0.8
302,033 - MPMX19_06516 0.40 -0.1
302,033 - MPMX19_06516 0.40 +0.1
302,033 - MPMX19_06516 0.40 +0.4
302,033 - MPMX19_06516 0.40 +0.1
302,033 - MPMX19_06516 0.40 +0.4
302,033 - MPMX19_06516 0.40 +0.5
302,053 + MPMX19_06516 0.43 +0.9
302,053 + MPMX19_06516 0.43 -0.4
302,054 - MPMX19_06516 0.43 -0.5
302,054 - MPMX19_06516 0.43 +0.7
302,065 + MPMX19_06516 0.44 +0.9
302,065 + MPMX19_06516 0.44 +0.1
302,065 + MPMX19_06516 0.44 +0.9
302,065 + MPMX19_06516 0.44 -0.9
302,065 + MPMX19_06516 0.44 +1.8
302,065 + MPMX19_06516 0.44 -0.7
302,065 + MPMX19_06516 0.44 +0.1
302,065 + MPMX19_06516 0.44 +0.8
302,065 + MPMX19_06516 0.44 +0.1
302,065 + MPMX19_06516 0.44 -0.3
302,065 + MPMX19_06516 0.44 +1.4
302,065 + MPMX19_06516 0.44 -1.1
302,065 + MPMX19_06516 0.44 +0.5
302,066 - MPMX19_06516 0.44 -0.6
302,066 - MPMX19_06516 0.44 -1.8
302,066 - MPMX19_06516 0.44 +1.7
302,066 - MPMX19_06516 0.44 -0.6
302,066 - MPMX19_06516 0.44 +0.4
302,066 - MPMX19_06516 0.44 +0.7
302,066 - MPMX19_06516 0.44 +0.1
302,066 - MPMX19_06516 0.44 +1.7
302,066 - MPMX19_06516 0.44 -1.5
302,066 - MPMX19_06516 0.44 +0.3
302,066 - MPMX19_06516 0.44 -2.3
302,066 - MPMX19_06516 0.44 -0.1
302,066 - MPMX19_06516 0.44 -1.0
302,066 - MPMX19_06516 0.44 -0.2
302,194 + MPMX19_06516 0.60 -1.2
302,194 + MPMX19_06516 0.60 +0.6
302,195 - MPMX19_06516 0.60 -0.5
302,284 + MPMX19_06516 0.71 -0.1
302,284 + MPMX19_06516 0.71 +0.3
302,284 + MPMX19_06516 0.71 +0.2
302,284 + MPMX19_06516 0.71 +0.4
302,285 - MPMX19_06516 0.71 +0.3
302,285 - MPMX19_06516 0.71 -0.6
302,568 + -0.2
302,568 + -2.2
302,568 + +0.8
302,569 - -0.8
302,569 - +1.2
302,604 + +0.1
302,604 + +0.4
302,605 - -1.1

Or see this region's nucleotide sequence