Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06495

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06494 and MPMX19_06495 are separated by 548 nucleotidesMPMX19_06495 and MPMX19_06496 overlap by 4 nucleotides MPMX19_06494: MPMX19_06494 - hypothetical protein, at 276,785 to 277,357 _06494 MPMX19_06495: MPMX19_06495 - hypothetical protein, at 277,906 to 278,991 _06495 MPMX19_06496: MPMX19_06496 - FAD-dependent urate hydroxylase, at 278,988 to 280,448 _06496 Position (kb) 277 278 279Strain fitness (log2 ratio) -2 -1 0 1 2at 276.913 kb on + strand, within MPMX19_06494at 276.913 kb on + strand, within MPMX19_06494at 276.914 kb on - strand, within MPMX19_06494at 276.914 kb on - strand, within MPMX19_06494at 276.914 kb on - strand, within MPMX19_06494at 276.914 kb on - strand, within MPMX19_06494at 276.914 kb on - strand, within MPMX19_06494at 277.079 kb on + strand, within MPMX19_06494at 277.079 kb on + strand, within MPMX19_06494at 277.079 kb on + strand, within MPMX19_06494at 277.079 kb on + strand, within MPMX19_06494at 277.079 kb on + strand, within MPMX19_06494at 277.079 kb on + strand, within MPMX19_06494at 277.079 kb on + strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.080 kb on - strand, within MPMX19_06494at 277.082 kb on + strand, within MPMX19_06494at 277.082 kb on + strand, within MPMX19_06494at 277.083 kb on - strand, within MPMX19_06494at 277.083 kb on - strand, within MPMX19_06494at 277.083 kb on - strand, within MPMX19_06494at 277.083 kb on - strand, within MPMX19_06494at 277.083 kb on - strand, within MPMX19_06494at 277.118 kb on + strand, within MPMX19_06494at 277.118 kb on + strand, within MPMX19_06494at 277.118 kb on + strand, within MPMX19_06494at 277.118 kb on + strand, within MPMX19_06494at 277.118 kb on + strand, within MPMX19_06494at 277.118 kb on + strand, within MPMX19_06494at 277.118 kb on + strand, within MPMX19_06494at 277.118 kb on + strand, within MPMX19_06494at 277.119 kb on - strand, within MPMX19_06494at 277.119 kb on - strand, within MPMX19_06494at 277.119 kb on - strand, within MPMX19_06494at 277.119 kb on - strand, within MPMX19_06494at 277.119 kb on - strand, within MPMX19_06494at 277.119 kb on - strand, within MPMX19_06494at 277.119 kb on - strand, within MPMX19_06494at 277.119 kb on - strand, within MPMX19_06494at 277.189 kb on + strand, within MPMX19_06494at 277.190 kb on - strand, within MPMX19_06494at 277.203 kb on - strand, within MPMX19_06494at 277.203 kb on - strand, within MPMX19_06494at 277.203 kb on - strand, within MPMX19_06494at 277.203 kb on - strand, within MPMX19_06494at 277.314 kb on + strandat 277.314 kb on + strandat 277.314 kb on + strandat 277.314 kb on + strandat 277.315 kb on - strandat 277.315 kb on - strandat 277.325 kb on + strandat 277.325 kb on + strandat 277.325 kb on + strandat 277.325 kb on + strandat 277.325 kb on + strandat 277.325 kb on + strandat 277.326 kb on - strandat 277.326 kb on - strandat 277.326 kb on - strandat 277.326 kb on - strandat 277.326 kb on - strandat 277.326 kb on - strandat 277.326 kb on - strandat 277.501 kb on - strandat 277.515 kb on - strandat 277.525 kb on - strandat 277.594 kb on + strandat 277.594 kb on + strandat 277.594 kb on + strandat 277.594 kb on + strandat 277.594 kb on + strandat 277.595 kb on - strandat 277.595 kb on - strandat 277.595 kb on - strandat 277.652 kb on + strandat 277.667 kb on + strandat 277.668 kb on - strandat 277.668 kb on - strandat 277.681 kb on + strandat 277.682 kb on - strandat 277.691 kb on - strandat 277.691 kb on - strandat 277.693 kb on + strandat 277.693 kb on + strandat 277.694 kb on - strandat 277.836 kb on + strandat 277.836 kb on + strandat 277.837 kb on - strandat 277.837 kb on - strandat 277.837 kb on - strandat 277.837 kb on - strandat 277.837 kb on - strandat 277.837 kb on - strandat 277.837 kb on - strandat 277.841 kb on + strandat 277.841 kb on + strandat 277.841 kb on + strandat 277.841 kb on + strandat 277.841 kb on + strandat 277.841 kb on + strandat 277.841 kb on + strandat 277.841 kb on + strandat 277.841 kb on + strandat 277.841 kb on + strandat 277.841 kb on + strandat 277.841 kb on + strandat 277.842 kb on - strandat 277.842 kb on - strandat 277.842 kb on - strandat 277.842 kb on - strandat 277.842 kb on - strandat 277.842 kb on - strandat 277.842 kb on - strandat 277.842 kb on - strandat 277.842 kb on - strandat 278.195 kb on + strand, within MPMX19_06495at 278.195 kb on + strand, within MPMX19_06495at 278.196 kb on - strand, within MPMX19_06495at 278.196 kb on - strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.303 kb on - strand, within MPMX19_06495at 278.303 kb on - strand, within MPMX19_06495at 278.303 kb on - strand, within MPMX19_06495at 278.568 kb on - strand, within MPMX19_06495at 278.568 kb on - strand, within MPMX19_06495at 278.568 kb on - strand, within MPMX19_06495at 278.677 kb on - strand, within MPMX19_06495at 278.738 kb on + strand, within MPMX19_06495at 278.738 kb on + strand, within MPMX19_06495at 279.074 kb on - strandat 279.074 kb on - strandat 279.074 kb on - strandat 279.074 kb on - strandat 279.074 kb on - strandat 279.555 kb on - strand, within MPMX19_06496at 279.555 kb on - strand, within MPMX19_06496at 279.555 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.566 kb on - strand, within MPMX19_06496at 279.566 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
276,913 + MPMX19_06494 0.22 +0.1
276,913 + MPMX19_06494 0.22 +0.1
276,914 - MPMX19_06494 0.23 +1.7
276,914 - MPMX19_06494 0.23 -0.4
276,914 - MPMX19_06494 0.23 -0.4
276,914 - MPMX19_06494 0.23 -1.5
276,914 - MPMX19_06494 0.23 -1.8
277,079 + MPMX19_06494 0.51 -0.3
277,079 + MPMX19_06494 0.51 -0.6
277,079 + MPMX19_06494 0.51 -0.0
277,079 + MPMX19_06494 0.51 -1.0
277,079 + MPMX19_06494 0.51 -0.6
277,079 + MPMX19_06494 0.51 +0.2
277,079 + MPMX19_06494 0.51 -1.8
277,080 - MPMX19_06494 0.51 +0.0
277,080 - MPMX19_06494 0.51 -0.5
277,080 - MPMX19_06494 0.51 -0.6
277,080 - MPMX19_06494 0.51 +0.6
277,080 - MPMX19_06494 0.51 +0.3
277,080 - MPMX19_06494 0.51 -1.7
277,080 - MPMX19_06494 0.51 -0.4
277,080 - MPMX19_06494 0.51 -0.2
277,080 - MPMX19_06494 0.51 +0.5
277,080 - MPMX19_06494 0.51 -2.0
277,080 - MPMX19_06494 0.51 +0.1
277,080 - MPMX19_06494 0.51 +0.2
277,080 - MPMX19_06494 0.51 -1.2
277,080 - MPMX19_06494 0.51 -0.1
277,082 + MPMX19_06494 0.52 +0.3
277,082 + MPMX19_06494 0.52 -1.0
277,083 - MPMX19_06494 0.52 -0.0
277,083 - MPMX19_06494 0.52 -0.4
277,083 - MPMX19_06494 0.52 +1.6
277,083 - MPMX19_06494 0.52 -0.4
277,083 - MPMX19_06494 0.52 -0.5
277,118 + MPMX19_06494 0.58 +0.2
277,118 + MPMX19_06494 0.58 -0.5
277,118 + MPMX19_06494 0.58 -1.1
277,118 + MPMX19_06494 0.58 -1.2
277,118 + MPMX19_06494 0.58 -2.0
277,118 + MPMX19_06494 0.58 -0.3
277,118 + MPMX19_06494 0.58 +0.2
277,118 + MPMX19_06494 0.58 +0.8
277,119 - MPMX19_06494 0.58 -0.8
277,119 - MPMX19_06494 0.58 +0.1
277,119 - MPMX19_06494 0.58 +1.1
277,119 - MPMX19_06494 0.58 +0.7
277,119 - MPMX19_06494 0.58 +0.7
277,119 - MPMX19_06494 0.58 +0.5
277,119 - MPMX19_06494 0.58 -0.6
277,119 - MPMX19_06494 0.58 +0.2
277,189 + MPMX19_06494 0.71 +0.4
277,190 - MPMX19_06494 0.71 -0.8
277,203 - MPMX19_06494 0.73 +0.6
277,203 - MPMX19_06494 0.73 +0.4
277,203 - MPMX19_06494 0.73 +0.7
277,203 - MPMX19_06494 0.73 -0.2
277,314 + +2.1
277,314 + +0.3
277,314 + -0.1
277,314 + +0.2
277,315 - +0.1
277,315 - +1.1
277,325 + -1.5
277,325 + -0.7
277,325 + -0.9
277,325 + +0.4
277,325 + -1.5
277,325 + +0.1
277,326 - -0.8
277,326 - -0.2
277,326 - +0.6
277,326 - -1.3
277,326 - -2.2
277,326 - +1.7
277,326 - -0.1
277,501 - +0.4
277,515 - +0.1
277,525 - -0.4
277,594 + +0.2
277,594 + -1.5
277,594 + -1.6
277,594 + +0.3
277,594 + +0.2
277,595 - -0.3
277,595 - -0.4
277,595 - +0.7
277,652 + -0.6
277,667 + -0.2
277,668 - +0.9
277,668 - +0.0
277,681 + +0.2
277,682 - -0.6
277,691 - -1.1
277,691 - +0.5
277,693 + -0.4
277,693 + -0.6
277,694 - -0.2
277,836 + -1.0
277,836 + +0.1
277,837 - -0.6
277,837 - +0.5
277,837 - -1.1
277,837 - -0.7
277,837 - +0.7
277,837 - -0.5
277,837 - -1.2
277,841 + -0.4
277,841 + +0.7
277,841 + -1.5
277,841 + +1.1
277,841 + +0.4
277,841 + +0.2
277,841 + -0.0
277,841 + +0.1
277,841 + -1.0
277,841 + -0.3
277,841 + +0.6
277,841 + -0.1
277,842 - -0.0
277,842 - -1.1
277,842 - -0.6
277,842 - -1.1
277,842 - -0.8
277,842 - +1.1
277,842 - -1.0
277,842 - +0.7
277,842 - +0.9
278,195 + MPMX19_06495 0.27 -0.2
278,195 + MPMX19_06495 0.27 -0.0
278,196 - MPMX19_06495 0.27 +0.3
278,196 - MPMX19_06495 0.27 -0.2
278,270 + MPMX19_06495 0.34 +0.3
278,270 + MPMX19_06495 0.34 -0.6
278,270 + MPMX19_06495 0.34 +0.4
278,270 + MPMX19_06495 0.34 -0.3
278,270 + MPMX19_06495 0.34 -0.3
278,270 + MPMX19_06495 0.34 -0.5
278,270 + MPMX19_06495 0.34 +0.7
278,270 + MPMX19_06495 0.34 +0.7
278,270 + MPMX19_06495 0.34 -0.9
278,270 + MPMX19_06495 0.34 +1.7
278,270 + MPMX19_06495 0.34 +0.9
278,271 - MPMX19_06495 0.34 -1.1
278,271 - MPMX19_06495 0.34 +0.4
278,271 - MPMX19_06495 0.34 +0.4
278,271 - MPMX19_06495 0.34 -0.8
278,271 - MPMX19_06495 0.34 +0.4
278,271 - MPMX19_06495 0.34 -0.3
278,271 - MPMX19_06495 0.34 +1.5
278,271 - MPMX19_06495 0.34 -0.0
278,303 - MPMX19_06495 0.37 +0.1
278,303 - MPMX19_06495 0.37 +1.5
278,303 - MPMX19_06495 0.37 +1.4
278,568 - MPMX19_06495 0.61 -0.3
278,568 - MPMX19_06495 0.61 +0.1
278,568 - MPMX19_06495 0.61 +1.3
278,677 - MPMX19_06495 0.71 +0.1
278,738 + MPMX19_06495 0.77 -0.6
278,738 + MPMX19_06495 0.77 -0.9
279,074 - +0.9
279,074 - -0.5
279,074 - -0.3
279,074 - -0.2
279,074 - +0.1
279,555 - MPMX19_06496 0.39 -0.6
279,555 - MPMX19_06496 0.39 +0.4
279,555 - MPMX19_06496 0.39 -0.9
279,557 - MPMX19_06496 0.39 +0.3
279,557 - MPMX19_06496 0.39 +0.7
279,557 - MPMX19_06496 0.39 -1.5
279,557 - MPMX19_06496 0.39 +0.1
279,557 - MPMX19_06496 0.39 +1.7
279,557 - MPMX19_06496 0.39 -0.9
279,557 - MPMX19_06496 0.39 -0.6
279,557 - MPMX19_06496 0.39 -0.6
279,566 - MPMX19_06496 0.40 -0.1
279,566 - MPMX19_06496 0.40 -0.0
279,677 - MPMX19_06496 0.47 -2.2
279,677 - MPMX19_06496 0.47 -0.1
279,677 - MPMX19_06496 0.47 +2.1
279,677 - MPMX19_06496 0.47 -1.0
279,677 - MPMX19_06496 0.47 -2.0
279,677 - MPMX19_06496 0.47 -1.3
279,677 - MPMX19_06496 0.47 -1.2
279,677 - MPMX19_06496 0.47 -0.0
279,677 - MPMX19_06496 0.47 +0.7
279,677 - MPMX19_06496 0.47 -0.8
279,677 - MPMX19_06496 0.47 -0.2
279,677 - MPMX19_06496 0.47 -0.3

Or see this region's nucleotide sequence