Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06417 and MPMX19_06418 are separated by 101 nucleotides MPMX19_06418 and MPMX19_06419 are separated by 512 nucleotides
MPMX19_06417: MPMX19_06417 - Transcriptional regulatory protein OmpR, at 187,325 to 188,038
_06417
MPMX19_06418: MPMX19_06418 - Adaptive-response sensory-kinase SasA, at 188,140 to 189,387
_06418
MPMX19_06419: MPMX19_06419 - IS110 family transposase ISHne3, at 189,900 to 190,586
_06419
Position (kb) 188
189
190 Strain fitness (log2 ratio) -2
-1
0
1
2 at 187.238 kb on + strand at 187.400 kb on + strand, within MPMX19_06417 at 187.401 kb on - strand, within MPMX19_06417 at 187.401 kb on - strand, within MPMX19_06417 at 187.428 kb on - strand, within MPMX19_06417 at 187.428 kb on - strand, within MPMX19_06417 at 187.428 kb on - strand, within MPMX19_06417 at 187.444 kb on + strand, within MPMX19_06417 at 187.444 kb on + strand, within MPMX19_06417 at 187.444 kb on + strand, within MPMX19_06417 at 187.444 kb on + strand, within MPMX19_06417 at 187.445 kb on - strand, within MPMX19_06417 at 187.445 kb on - strand, within MPMX19_06417 at 187.445 kb on - strand, within MPMX19_06417 at 187.445 kb on - strand, within MPMX19_06417 at 187.445 kb on - strand, within MPMX19_06417 at 187.445 kb on - strand, within MPMX19_06417 at 187.616 kb on + strand, within MPMX19_06417 at 187.617 kb on - strand, within MPMX19_06417 at 187.617 kb on - strand, within MPMX19_06417 at 187.617 kb on - strand, within MPMX19_06417 at 187.617 kb on - strand, within MPMX19_06417 at 187.750 kb on + strand, within MPMX19_06417 at 187.751 kb on - strand, within MPMX19_06417 at 187.817 kb on + strand, within MPMX19_06417 at 187.960 kb on + strand, within MPMX19_06417 at 188.006 kb on + strand at 188.006 kb on + strand at 188.006 kb on + strand at 188.006 kb on + strand at 188.006 kb on + strand at 188.006 kb on + strand at 188.006 kb on + strand at 188.006 kb on + strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.081 kb on + strand at 188.081 kb on + strand at 188.082 kb on - strand at 188.082 kb on - strand at 188.134 kb on + strand at 188.139 kb on + strand at 188.139 kb on + strand at 188.139 kb on + strand at 188.321 kb on - strand, within MPMX19_06418 at 188.321 kb on - strand, within MPMX19_06418 at 188.321 kb on - strand, within MPMX19_06418 at 188.321 kb on - strand, within MPMX19_06418 at 188.345 kb on + strand, within MPMX19_06418 at 188.346 kb on - strand, within MPMX19_06418 at 188.403 kb on - strand, within MPMX19_06418 at 188.585 kb on + strand, within MPMX19_06418 at 188.586 kb on - strand, within MPMX19_06418 at 188.586 kb on - strand, within MPMX19_06418 at 188.586 kb on - strand, within MPMX19_06418 at 188.586 kb on - strand, within MPMX19_06418 at 188.586 kb on - strand, within MPMX19_06418 at 188.621 kb on + strand, within MPMX19_06418 at 188.622 kb on - strand, within MPMX19_06418 at 188.702 kb on + strand, within MPMX19_06418 at 188.702 kb on + strand, within MPMX19_06418 at 188.702 kb on + strand, within MPMX19_06418 at 188.743 kb on - strand, within MPMX19_06418 at 188.754 kb on - strand, within MPMX19_06418 at 188.754 kb on - strand, within MPMX19_06418 at 188.836 kb on + strand, within MPMX19_06418 at 188.836 kb on + strand, within MPMX19_06418 at 188.900 kb on + strand, within MPMX19_06418 at 188.900 kb on + strand, within MPMX19_06418 at 188.900 kb on + strand, within MPMX19_06418 at 188.900 kb on + strand, within MPMX19_06418 at 188.932 kb on - strand, within MPMX19_06418 at 188.975 kb on + strand, within MPMX19_06418 at 188.976 kb on - strand, within MPMX19_06418 at 188.976 kb on - strand, within MPMX19_06418 at 189.022 kb on + strand, within MPMX19_06418 at 189.022 kb on + strand, within MPMX19_06418 at 189.022 kb on + strand, within MPMX19_06418 at 189.023 kb on - strand, within MPMX19_06418 at 189.023 kb on - strand, within MPMX19_06418 at 189.023 kb on - strand, within MPMX19_06418 at 189.032 kb on + strand, within MPMX19_06418 at 189.032 kb on + strand, within MPMX19_06418 at 189.033 kb on - strand, within MPMX19_06418 at 189.033 kb on - strand, within MPMX19_06418 at 189.212 kb on + strand, within MPMX19_06418 at 189.212 kb on + strand, within MPMX19_06418 at 189.212 kb on + strand, within MPMX19_06418 at 189.226 kb on + strand, within MPMX19_06418 at 189.227 kb on - strand, within MPMX19_06418 at 189.227 kb on - strand, within MPMX19_06418 at 189.265 kb on + strand at 189.318 kb on + strand at 189.318 kb on + strand at 189.318 kb on + strand at 189.323 kb on + strand at 189.376 kb on - strand at 189.377 kb on + strand at 189.432 kb on + strand at 189.563 kb on + strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.606 kb on - strand at 189.606 kb on - strand at 189.606 kb on - strand at 189.635 kb on + strand at 189.635 kb on + strand at 189.635 kb on + strand at 189.635 kb on + strand at 189.636 kb on - strand at 189.636 kb on - strand at 189.651 kb on + strand at 189.652 kb on - strand at 189.652 kb on - strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.726 kb on - strand at 189.726 kb on - strand at 189.726 kb on - strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.902 kb on - strand at 189.902 kb on - strand at 189.902 kb on - strand at 189.902 kb on - strand at 190.048 kb on + strand, within MPMX19_06419 at 190.048 kb on + strand, within MPMX19_06419 at 190.048 kb on + strand, within MPMX19_06419 at 190.048 kb on + strand, within MPMX19_06419 at 190.049 kb on - strand, within MPMX19_06419 at 190.049 kb on - strand, within MPMX19_06419 at 190.118 kb on - strand, within MPMX19_06419
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 187,238 + +0.4 187,400 + MPMX19_06417 0.11 -0.3 187,401 - MPMX19_06417 0.11 -0.9 187,401 - MPMX19_06417 0.11 -0.5 187,428 - MPMX19_06417 0.14 -2.0 187,428 - MPMX19_06417 0.14 -0.3 187,428 - MPMX19_06417 0.14 -0.0 187,444 + MPMX19_06417 0.17 +0.7 187,444 + MPMX19_06417 0.17 -0.3 187,444 + MPMX19_06417 0.17 -0.9 187,444 + MPMX19_06417 0.17 -0.4 187,445 - MPMX19_06417 0.17 -0.4 187,445 - MPMX19_06417 0.17 +0.6 187,445 - MPMX19_06417 0.17 +0.1 187,445 - MPMX19_06417 0.17 +1.7 187,445 - MPMX19_06417 0.17 +0.8 187,445 - MPMX19_06417 0.17 +0.2 187,616 + MPMX19_06417 0.41 -0.8 187,617 - MPMX19_06417 0.41 +0.5 187,617 - MPMX19_06417 0.41 +0.9 187,617 - MPMX19_06417 0.41 -0.5 187,617 - MPMX19_06417 0.41 -0.9 187,750 + MPMX19_06417 0.60 -1.6 187,751 - MPMX19_06417 0.60 -0.5 187,817 + MPMX19_06417 0.69 -0.2 187,960 + MPMX19_06417 0.89 +0.5 188,006 + +0.2 188,006 + -1.7 188,006 + +0.2 188,006 + -0.6 188,006 + -1.6 188,006 + +0.2 188,006 + -2.3 188,006 + -2.0 188,007 - -1.5 188,007 - -0.9 188,007 - -0.3 188,007 - +0.5 188,007 - -1.1 188,007 - -0.3 188,007 - +0.3 188,007 - -0.9 188,081 + +0.8 188,081 + +0.6 188,082 - +0.7 188,082 - -1.3 188,134 + +0.4 188,139 + +0.5 188,139 + +0.5 188,139 + -0.5 188,321 - MPMX19_06418 0.15 -0.2 188,321 - MPMX19_06418 0.15 -0.6 188,321 - MPMX19_06418 0.15 -0.9 188,321 - MPMX19_06418 0.15 -0.0 188,345 + MPMX19_06418 0.16 -0.9 188,346 - MPMX19_06418 0.17 -0.2 188,403 - MPMX19_06418 0.21 -1.3 188,585 + MPMX19_06418 0.36 -1.3 188,586 - MPMX19_06418 0.36 -0.5 188,586 - MPMX19_06418 0.36 -0.1 188,586 - MPMX19_06418 0.36 -0.6 188,586 - MPMX19_06418 0.36 -0.5 188,586 - MPMX19_06418 0.36 +0.9 188,621 + MPMX19_06418 0.39 +0.9 188,622 - MPMX19_06418 0.39 +0.7 188,702 + MPMX19_06418 0.45 -0.3 188,702 + MPMX19_06418 0.45 -0.9 188,702 + MPMX19_06418 0.45 -0.8 188,743 - MPMX19_06418 0.48 +0.6 188,754 - MPMX19_06418 0.49 -0.5 188,754 - MPMX19_06418 0.49 -0.6 188,836 + MPMX19_06418 0.56 +1.1 188,836 + MPMX19_06418 0.56 -0.1 188,900 + MPMX19_06418 0.61 -2.7 188,900 + MPMX19_06418 0.61 -2.0 188,900 + MPMX19_06418 0.61 +0.7 188,900 + MPMX19_06418 0.61 +0.4 188,932 - MPMX19_06418 0.63 -1.4 188,975 + MPMX19_06418 0.67 -0.1 188,976 - MPMX19_06418 0.67 +0.9 188,976 - MPMX19_06418 0.67 -2.0 189,022 + MPMX19_06418 0.71 -1.1 189,022 + MPMX19_06418 0.71 -1.6 189,022 + MPMX19_06418 0.71 -1.3 189,023 - MPMX19_06418 0.71 -1.1 189,023 - MPMX19_06418 0.71 -0.9 189,023 - MPMX19_06418 0.71 +0.1 189,032 + MPMX19_06418 0.71 -2.0 189,032 + MPMX19_06418 0.71 +0.1 189,033 - MPMX19_06418 0.72 -1.1 189,033 - MPMX19_06418 0.72 +0.7 189,212 + MPMX19_06418 0.86 +0.4 189,212 + MPMX19_06418 0.86 -0.3 189,212 + MPMX19_06418 0.86 -1.3 189,226 + MPMX19_06418 0.87 -1.1 189,227 - MPMX19_06418 0.87 +0.1 189,227 - MPMX19_06418 0.87 -0.3 189,265 + +1.7 189,318 + -0.4 189,318 + +1.7 189,318 + -1.8 189,323 + +0.1 189,376 - -0.5 189,377 + -0.2 189,432 + +1.1 189,563 + -1.8 189,605 + -0.3 189,605 + -1.9 189,605 + -2.5 189,605 + +0.0 189,606 - -0.1 189,606 - +0.5 189,606 - -0.3 189,635 + +0.1 189,635 + -1.2 189,635 + +0.5 189,635 + -0.8 189,636 - +0.2 189,636 - -0.3 189,651 + -1.9 189,652 - -0.0 189,652 - +0.5 189,725 + -0.4 189,725 + -1.2 189,725 + +1.0 189,725 + -0.5 189,725 + +0.5 189,726 - -0.8 189,726 - -1.1 189,726 - +0.6 189,901 + +0.5 189,901 + +0.1 189,901 + -0.2 189,901 + +0.2 189,901 + +0.3 189,901 + +0.0 189,901 + -1.5 189,902 - -0.1 189,902 - +0.2 189,902 - +0.8 189,902 - -1.0 190,048 + MPMX19_06419 0.22 +2.0 190,048 + MPMX19_06419 0.22 -1.2 190,048 + MPMX19_06419 0.22 +0.6 190,048 + MPMX19_06419 0.22 -0.3 190,049 - MPMX19_06419 0.22 -0.2 190,049 - MPMX19_06419 0.22 -0.6 190,118 - MPMX19_06419 0.32 -0.8
Or see this region's nucleotide sequence