Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06416

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06415 and MPMX19_06416 are separated by 13 nucleotidesMPMX19_06416 and MPMX19_06417 are separated by 214 nucleotides MPMX19_06415: MPMX19_06415 - Copper resistance protein A, at 184,467 to 186,341 _06415 MPMX19_06416: MPMX19_06416 - Copper resistance protein B, at 186,355 to 187,110 _06416 MPMX19_06417: MPMX19_06417 - Transcriptional regulatory protein OmpR, at 187,325 to 188,038 _06417 Position (kb) 186 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 185.397 kb on + strand, within MPMX19_06415at 185.397 kb on + strand, within MPMX19_06415at 185.397 kb on + strand, within MPMX19_06415at 185.397 kb on + strand, within MPMX19_06415at 185.398 kb on - strand, within MPMX19_06415at 185.398 kb on - strand, within MPMX19_06415at 185.398 kb on - strand, within MPMX19_06415at 185.398 kb on - strand, within MPMX19_06415at 185.398 kb on - strand, within MPMX19_06415at 185.657 kb on + strand, within MPMX19_06415at 185.657 kb on + strand, within MPMX19_06415at 185.657 kb on + strand, within MPMX19_06415at 185.657 kb on + strand, within MPMX19_06415at 185.657 kb on + strand, within MPMX19_06415at 185.657 kb on + strand, within MPMX19_06415at 185.657 kb on + strand, within MPMX19_06415at 185.657 kb on + strand, within MPMX19_06415at 185.657 kb on + strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.658 kb on - strand, within MPMX19_06415at 185.831 kb on + strand, within MPMX19_06415at 185.831 kb on + strand, within MPMX19_06415at 185.831 kb on + strand, within MPMX19_06415at 185.831 kb on + strand, within MPMX19_06415at 185.832 kb on - strand, within MPMX19_06415at 185.832 kb on - strand, within MPMX19_06415at 185.832 kb on - strand, within MPMX19_06415at 185.832 kb on - strand, within MPMX19_06415at 185.832 kb on - strand, within MPMX19_06415at 185.832 kb on - strand, within MPMX19_06415at 185.925 kb on + strand, within MPMX19_06415at 185.925 kb on + strand, within MPMX19_06415at 185.926 kb on - strand, within MPMX19_06415at 185.926 kb on - strand, within MPMX19_06415at 185.926 kb on - strand, within MPMX19_06415at 185.926 kb on - strand, within MPMX19_06415at 186.015 kb on + strand, within MPMX19_06415at 186.015 kb on + strand, within MPMX19_06415at 186.015 kb on + strand, within MPMX19_06415at 186.015 kb on + strand, within MPMX19_06415at 186.015 kb on + strand, within MPMX19_06415at 186.015 kb on + strand, within MPMX19_06415at 186.015 kb on + strand, within MPMX19_06415at 186.015 kb on + strand, within MPMX19_06415at 186.015 kb on + strand, within MPMX19_06415at 186.015 kb on + strand, within MPMX19_06415at 186.015 kb on + strand, within MPMX19_06415at 186.016 kb on - strand, within MPMX19_06415at 186.016 kb on - strand, within MPMX19_06415at 186.016 kb on - strand, within MPMX19_06415at 186.016 kb on - strand, within MPMX19_06415at 186.016 kb on - strand, within MPMX19_06415at 186.016 kb on - strand, within MPMX19_06415at 186.016 kb on - strand, within MPMX19_06415at 186.279 kb on + strandat 186.279 kb on + strandat 186.280 kb on - strandat 186.280 kb on - strandat 186.280 kb on - strandat 186.365 kb on + strandat 186.365 kb on + strandat 186.365 kb on + strandat 186.366 kb on - strandat 186.366 kb on - strandat 186.381 kb on + strandat 186.381 kb on + strandat 186.381 kb on + strandat 186.381 kb on + strandat 186.381 kb on + strandat 186.381 kb on + strandat 186.382 kb on - strandat 186.585 kb on + strand, within MPMX19_06416at 186.585 kb on + strand, within MPMX19_06416at 186.585 kb on + strand, within MPMX19_06416at 186.585 kb on + strand, within MPMX19_06416at 186.586 kb on - strand, within MPMX19_06416at 186.586 kb on - strand, within MPMX19_06416at 186.586 kb on - strand, within MPMX19_06416at 186.586 kb on - strand, within MPMX19_06416at 186.586 kb on - strand, within MPMX19_06416at 186.658 kb on + strand, within MPMX19_06416at 186.658 kb on + strand, within MPMX19_06416at 186.659 kb on - strand, within MPMX19_06416at 186.661 kb on - strand, within MPMX19_06416at 186.661 kb on - strand, within MPMX19_06416at 186.661 kb on - strand, within MPMX19_06416at 186.661 kb on - strand, within MPMX19_06416at 186.706 kb on + strand, within MPMX19_06416at 186.706 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.769 kb on + strand, within MPMX19_06416at 186.769 kb on + strand, within MPMX19_06416at 186.772 kb on + strand, within MPMX19_06416at 186.773 kb on - strand, within MPMX19_06416at 186.813 kb on + strand, within MPMX19_06416at 186.841 kb on + strand, within MPMX19_06416at 186.842 kb on - strand, within MPMX19_06416at 186.852 kb on + strand, within MPMX19_06416at 186.853 kb on - strand, within MPMX19_06416at 186.997 kb on + strand, within MPMX19_06416at 186.998 kb on - strand, within MPMX19_06416at 186.998 kb on - strand, within MPMX19_06416at 187.042 kb on - strandat 187.085 kb on + strandat 187.085 kb on + strandat 187.085 kb on + strandat 187.085 kb on + strandat 187.085 kb on + strandat 187.085 kb on + strandat 187.086 kb on - strandat 187.086 kb on - strandat 187.086 kb on - strandat 187.108 kb on + strandat 187.109 kb on - strandat 187.238 kb on + strandat 187.400 kb on + strand, within MPMX19_06417at 187.401 kb on - strand, within MPMX19_06417at 187.401 kb on - strand, within MPMX19_06417at 187.428 kb on - strand, within MPMX19_06417at 187.428 kb on - strand, within MPMX19_06417at 187.428 kb on - strand, within MPMX19_06417at 187.444 kb on + strand, within MPMX19_06417at 187.444 kb on + strand, within MPMX19_06417at 187.444 kb on + strand, within MPMX19_06417at 187.444 kb on + strand, within MPMX19_06417at 187.445 kb on - strand, within MPMX19_06417at 187.445 kb on - strand, within MPMX19_06417at 187.445 kb on - strand, within MPMX19_06417at 187.445 kb on - strand, within MPMX19_06417at 187.445 kb on - strand, within MPMX19_06417at 187.445 kb on - strand, within MPMX19_06417at 187.616 kb on + strand, within MPMX19_06417at 187.617 kb on - strand, within MPMX19_06417at 187.617 kb on - strand, within MPMX19_06417at 187.617 kb on - strand, within MPMX19_06417at 187.617 kb on - strand, within MPMX19_06417at 187.750 kb on + strand, within MPMX19_06417at 187.751 kb on - strand, within MPMX19_06417at 187.817 kb on + strand, within MPMX19_06417at 187.960 kb on + strand, within MPMX19_06417at 188.006 kb on + strandat 188.006 kb on + strandat 188.006 kb on + strandat 188.006 kb on + strandat 188.006 kb on + strandat 188.006 kb on + strandat 188.006 kb on + strandat 188.006 kb on + strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.081 kb on + strandat 188.081 kb on + strandat 188.082 kb on - strandat 188.082 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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185,397 + MPMX19_06415 0.50 -0.6
185,397 + MPMX19_06415 0.50 +0.3
185,397 + MPMX19_06415 0.50 +0.1
185,397 + MPMX19_06415 0.50 -2.2
185,398 - MPMX19_06415 0.50 -0.4
185,398 - MPMX19_06415 0.50 +0.7
185,398 - MPMX19_06415 0.50 +1.1
185,398 - MPMX19_06415 0.50 -0.8
185,398 - MPMX19_06415 0.50 +2.7
185,657 + MPMX19_06415 0.63 -0.9
185,657 + MPMX19_06415 0.63 -1.3
185,657 + MPMX19_06415 0.63 -1.6
185,657 + MPMX19_06415 0.63 -2.6
185,657 + MPMX19_06415 0.63 +0.0
185,657 + MPMX19_06415 0.63 -0.1
185,657 + MPMX19_06415 0.63 -2.6
185,657 + MPMX19_06415 0.63 +0.4
185,657 + MPMX19_06415 0.63 -0.6
185,658 - MPMX19_06415 0.64 -1.8
185,658 - MPMX19_06415 0.64 +1.4
185,658 - MPMX19_06415 0.64 -0.1
185,658 - MPMX19_06415 0.64 -0.1
185,658 - MPMX19_06415 0.64 -0.8
185,658 - MPMX19_06415 0.64 +0.2
185,658 - MPMX19_06415 0.64 -0.4
185,658 - MPMX19_06415 0.64 -1.6
185,658 - MPMX19_06415 0.64 +0.0
185,658 - MPMX19_06415 0.64 -1.8
185,658 - MPMX19_06415 0.64 +0.4
185,658 - MPMX19_06415 0.64 -0.2
185,658 - MPMX19_06415 0.64 -0.4
185,658 - MPMX19_06415 0.64 +1.7
185,831 + MPMX19_06415 0.73 -0.0
185,831 + MPMX19_06415 0.73 +0.2
185,831 + MPMX19_06415 0.73 -0.9
185,831 + MPMX19_06415 0.73 +0.7
185,832 - MPMX19_06415 0.73 -1.3
185,832 - MPMX19_06415 0.73 +0.4
185,832 - MPMX19_06415 0.73 +0.7
185,832 - MPMX19_06415 0.73 -0.1
185,832 - MPMX19_06415 0.73 +0.5
185,832 - MPMX19_06415 0.73 +0.2
185,925 + MPMX19_06415 0.78 +1.2
185,925 + MPMX19_06415 0.78 -1.8
185,926 - MPMX19_06415 0.78 +1.0
185,926 - MPMX19_06415 0.78 +0.1
185,926 - MPMX19_06415 0.78 +0.1
185,926 - MPMX19_06415 0.78 -0.6
186,015 + MPMX19_06415 0.83 -0.9
186,015 + MPMX19_06415 0.83 -0.9
186,015 + MPMX19_06415 0.83 -2.4
186,015 + MPMX19_06415 0.83 +0.3
186,015 + MPMX19_06415 0.83 -0.7
186,015 + MPMX19_06415 0.83 -0.2
186,015 + MPMX19_06415 0.83 +0.6
186,015 + MPMX19_06415 0.83 -0.3
186,015 + MPMX19_06415 0.83 -0.9
186,015 + MPMX19_06415 0.83 -0.0
186,015 + MPMX19_06415 0.83 -0.9
186,016 - MPMX19_06415 0.83 -0.8
186,016 - MPMX19_06415 0.83 -0.3
186,016 - MPMX19_06415 0.83 -0.6
186,016 - MPMX19_06415 0.83 -0.1
186,016 - MPMX19_06415 0.83 -2.0
186,016 - MPMX19_06415 0.83 +0.6
186,016 - MPMX19_06415 0.83 -0.5
186,279 + -0.1
186,279 + +0.4
186,280 - +0.0
186,280 - -0.9
186,280 - -1.1
186,365 + -0.1
186,365 + +0.2
186,365 + -0.1
186,366 - +0.9
186,366 - +1.4
186,381 + +0.1
186,381 + +1.2
186,381 + +0.5
186,381 + +0.0
186,381 + -0.6
186,381 + -0.8
186,382 - -0.2
186,585 + MPMX19_06416 0.30 -0.7
186,585 + MPMX19_06416 0.30 +0.5
186,585 + MPMX19_06416 0.30 +0.0
186,585 + MPMX19_06416 0.30 -0.8
186,586 - MPMX19_06416 0.31 -0.8
186,586 - MPMX19_06416 0.31 +0.3
186,586 - MPMX19_06416 0.31 +0.4
186,586 - MPMX19_06416 0.31 +0.2
186,586 - MPMX19_06416 0.31 +0.7
186,658 + MPMX19_06416 0.40 -1.4
186,658 + MPMX19_06416 0.40 +0.2
186,659 - MPMX19_06416 0.40 -1.6
186,661 - MPMX19_06416 0.40 -2.8
186,661 - MPMX19_06416 0.40 -1.1
186,661 - MPMX19_06416 0.40 -0.7
186,661 - MPMX19_06416 0.40 +0.1
186,706 + MPMX19_06416 0.46 +0.1
186,706 + MPMX19_06416 0.46 -0.1
186,736 + MPMX19_06416 0.50 -0.4
186,736 + MPMX19_06416 0.50 -0.3
186,736 + MPMX19_06416 0.50 -0.5
186,736 + MPMX19_06416 0.50 -1.6
186,736 + MPMX19_06416 0.50 -1.4
186,736 + MPMX19_06416 0.50 -0.1
186,736 + MPMX19_06416 0.50 -1.9
186,736 + MPMX19_06416 0.50 -1.1
186,736 + MPMX19_06416 0.50 -0.0
186,736 + MPMX19_06416 0.50 -0.6
186,736 + MPMX19_06416 0.50 +0.9
186,736 + MPMX19_06416 0.50 -1.3
186,736 + MPMX19_06416 0.50 -0.1
186,737 - MPMX19_06416 0.51 -2.8
186,737 - MPMX19_06416 0.51 -0.0
186,737 - MPMX19_06416 0.51 -0.9
186,737 - MPMX19_06416 0.51 +0.4
186,737 - MPMX19_06416 0.51 +1.3
186,737 - MPMX19_06416 0.51 -0.1
186,737 - MPMX19_06416 0.51 -0.6
186,737 - MPMX19_06416 0.51 +0.1
186,737 - MPMX19_06416 0.51 +0.4
186,737 - MPMX19_06416 0.51 +0.5
186,737 - MPMX19_06416 0.51 +1.7
186,737 - MPMX19_06416 0.51 -1.5
186,737 - MPMX19_06416 0.51 +0.7
186,737 - MPMX19_06416 0.51 -1.9
186,737 - MPMX19_06416 0.51 +0.8
186,769 + MPMX19_06416 0.55 -0.9
186,769 + MPMX19_06416 0.55 +0.2
186,772 + MPMX19_06416 0.55 -2.4
186,773 - MPMX19_06416 0.55 +0.6
186,813 + MPMX19_06416 0.61 -1.1
186,841 + MPMX19_06416 0.64 +0.6
186,842 - MPMX19_06416 0.64 -0.3
186,852 + MPMX19_06416 0.66 -0.7
186,853 - MPMX19_06416 0.66 -0.1
186,997 + MPMX19_06416 0.85 -0.4
186,998 - MPMX19_06416 0.85 -1.6
186,998 - MPMX19_06416 0.85 +0.4
187,042 - +0.5
187,085 + -0.9
187,085 + -0.1
187,085 + -0.4
187,085 + -1.3
187,085 + -1.4
187,085 + -0.7
187,086 - -0.3
187,086 - -0.2
187,086 - -0.2
187,108 + -0.6
187,109 - -0.3
187,238 + +0.4
187,400 + MPMX19_06417 0.11 -0.3
187,401 - MPMX19_06417 0.11 -0.9
187,401 - MPMX19_06417 0.11 -0.5
187,428 - MPMX19_06417 0.14 -2.0
187,428 - MPMX19_06417 0.14 -0.3
187,428 - MPMX19_06417 0.14 -0.0
187,444 + MPMX19_06417 0.17 +0.7
187,444 + MPMX19_06417 0.17 -0.3
187,444 + MPMX19_06417 0.17 -0.9
187,444 + MPMX19_06417 0.17 -0.4
187,445 - MPMX19_06417 0.17 -0.4
187,445 - MPMX19_06417 0.17 +0.6
187,445 - MPMX19_06417 0.17 +0.1
187,445 - MPMX19_06417 0.17 +1.7
187,445 - MPMX19_06417 0.17 +0.8
187,445 - MPMX19_06417 0.17 +0.2
187,616 + MPMX19_06417 0.41 -0.8
187,617 - MPMX19_06417 0.41 +0.5
187,617 - MPMX19_06417 0.41 +0.9
187,617 - MPMX19_06417 0.41 -0.5
187,617 - MPMX19_06417 0.41 -0.9
187,750 + MPMX19_06417 0.60 -1.6
187,751 - MPMX19_06417 0.60 -0.5
187,817 + MPMX19_06417 0.69 -0.2
187,960 + MPMX19_06417 0.89 +0.5
188,006 + +0.2
188,006 + -1.7
188,006 + +0.2
188,006 + -0.6
188,006 + -1.6
188,006 + +0.2
188,006 + -2.3
188,006 + -2.0
188,007 - -1.5
188,007 - -0.9
188,007 - -0.3
188,007 - +0.5
188,007 - -1.1
188,007 - -0.3
188,007 - +0.3
188,007 - -0.9
188,081 + +0.8
188,081 + +0.6
188,082 - +0.7
188,082 - -1.3

Or see this region's nucleotide sequence