Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06282 and MPMX19_06283 are separated by 457 nucleotides MPMX19_06283 and MPMX19_06284 are separated by 220 nucleotides
MPMX19_06282: MPMX19_06282 - ATP-dependent RecD-like DNA helicase, at 30,806 to 33,031
_06282
MPMX19_06283: MPMX19_06283 - ISL3 family transposase ISAzba9, at 33,489 to 35,147
_06283
MPMX19_06284: MPMX19_06284 - hypothetical protein, at 35,368 to 36,030
_06284
Position (kb) 33
34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 32.497 kb on - strand, within MPMX19_06282 at 32.621 kb on + strand, within MPMX19_06282 at 32.621 kb on + strand, within MPMX19_06282 at 32.621 kb on + strand, within MPMX19_06282 at 32.621 kb on + strand, within MPMX19_06282 at 32.621 kb on + strand, within MPMX19_06282 at 32.621 kb on + strand, within MPMX19_06282 at 32.621 kb on + strand, within MPMX19_06282 at 32.621 kb on + strand, within MPMX19_06282 at 32.621 kb on + strand, within MPMX19_06282 at 32.621 kb on + strand, within MPMX19_06282 at 32.622 kb on + strand, within MPMX19_06282 at 32.622 kb on - strand, within MPMX19_06282 at 32.622 kb on - strand, within MPMX19_06282 at 32.622 kb on - strand, within MPMX19_06282 at 32.622 kb on - strand, within MPMX19_06282 at 32.622 kb on - strand, within MPMX19_06282 at 32.622 kb on - strand, within MPMX19_06282 at 32.675 kb on + strand, within MPMX19_06282 at 32.675 kb on + strand, within MPMX19_06282 at 32.675 kb on + strand, within MPMX19_06282 at 32.675 kb on + strand, within MPMX19_06282 at 32.675 kb on + strand, within MPMX19_06282 at 32.675 kb on + strand, within MPMX19_06282 at 32.675 kb on + strand, within MPMX19_06282 at 32.676 kb on - strand, within MPMX19_06282 at 32.676 kb on - strand, within MPMX19_06282 at 32.676 kb on - strand, within MPMX19_06282 at 32.676 kb on - strand, within MPMX19_06282 at 32.760 kb on - strand, within MPMX19_06282 at 32.795 kb on + strand, within MPMX19_06282 at 32.795 kb on + strand, within MPMX19_06282 at 32.795 kb on + strand, within MPMX19_06282 at 32.796 kb on - strand, within MPMX19_06282 at 32.831 kb on + strand at 32.832 kb on - strand at 32.832 kb on - strand at 32.894 kb on + strand at 32.895 kb on - strand at 32.896 kb on + strand at 32.896 kb on + strand at 33.134 kb on - strand at 33.198 kb on - strand at 33.295 kb on + strand at 33.295 kb on + strand at 33.295 kb on + strand at 33.295 kb on + strand at 33.295 kb on + strand at 33.295 kb on + strand at 33.296 kb on - strand at 33.296 kb on - strand at 33.296 kb on - strand at 33.296 kb on - strand at 33.296 kb on - strand at 33.296 kb on - strand at 33.296 kb on - strand at 33.296 kb on - strand at 33.332 kb on + strand at 33.332 kb on + strand at 33.332 kb on + strand at 33.333 kb on - strand at 33.333 kb on - strand at 33.333 kb on - strand at 33.333 kb on - strand at 33.333 kb on - strand at 33.333 kb on - strand at 33.333 kb on - strand at 33.349 kb on - strand at 33.404 kb on + strand at 33.404 kb on + strand at 33.404 kb on + strand at 33.404 kb on + strand at 33.404 kb on + strand at 33.404 kb on + strand at 33.405 kb on - strand at 33.405 kb on - strand at 33.405 kb on - strand at 33.405 kb on - strand at 33.405 kb on - strand at 33.405 kb on - strand at 33.427 kb on + strand at 33.427 kb on + strand at 33.427 kb on + strand at 33.427 kb on + strand at 33.428 kb on - strand at 33.428 kb on - strand at 33.428 kb on - strand at 33.428 kb on - strand at 33.474 kb on + strand at 33.474 kb on + strand at 33.474 kb on + strand at 33.475 kb on - strand at 33.541 kb on + strand at 33.541 kb on + strand at 33.541 kb on + strand at 33.541 kb on + strand at 33.541 kb on + strand at 33.542 kb on - strand at 33.542 kb on - strand at 33.542 kb on - strand at 33.542 kb on - strand at 33.542 kb on - strand at 33.976 kb on + strand, within MPMX19_06283 at 33.976 kb on + strand, within MPMX19_06283 at 33.976 kb on + strand, within MPMX19_06283 at 33.976 kb on + strand, within MPMX19_06283 at 33.976 kb on + strand, within MPMX19_06283 at 33.977 kb on - strand, within MPMX19_06283 at 33.977 kb on - strand, within MPMX19_06283 at 33.977 kb on - strand, within MPMX19_06283 at 33.977 kb on - strand, within MPMX19_06283 at 33.977 kb on - strand, within MPMX19_06283 at 33.977 kb on - strand, within MPMX19_06283 at 33.977 kb on - strand, within MPMX19_06283 at 33.978 kb on - strand, within MPMX19_06283 at 34.060 kb on + strand, within MPMX19_06283 at 34.070 kb on - strand, within MPMX19_06283 at 34.492 kb on + strand, within MPMX19_06283 at 34.492 kb on + strand, within MPMX19_06283 at 34.492 kb on + strand, within MPMX19_06283 at 34.493 kb on - strand, within MPMX19_06283 at 34.493 kb on - strand, within MPMX19_06283 at 34.975 kb on + strand, within MPMX19_06283 at 35.049 kb on + strand at 35.049 kb on + strand at 35.049 kb on + strand at 35.050 kb on - strand at 35.050 kb on - strand at 35.050 kb on - strand at 35.062 kb on + strand at 35.063 kb on - strand at 35.069 kb on + strand at 35.070 kb on - strand at 35.070 kb on - strand at 35.275 kb on - strand at 35.344 kb on + strand at 35.345 kb on - strand at 35.345 kb on - strand at 35.345 kb on - strand at 35.345 kb on - strand at 35.345 kb on - strand at 35.415 kb on + strand at 35.415 kb on + strand at 35.415 kb on + strand at 35.415 kb on + strand at 35.416 kb on - strand at 35.416 kb on - strand at 35.416 kb on - strand at 35.416 kb on - strand at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.491 kb on - strand, within MPMX19_06284 at 35.631 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.802 kb on + strand, within MPMX19_06284 at 35.802 kb on + strand, within MPMX19_06284 at 35.829 kb on - strand, within MPMX19_06284 at 35.829 kb on - strand, within MPMX19_06284 at 35.829 kb on - strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.984 kb on + strand at 35.984 kb on + strand at 35.984 kb on + strand at 35.984 kb on + strand at 35.984 kb on + strand at 36.132 kb on + strand at 36.132 kb on + strand at 36.132 kb on + strand at 36.132 kb on + strand at 36.132 kb on + strand at 36.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 32,497 - MPMX19_06282 0.76 -0.4 32,621 + MPMX19_06282 0.82 +0.1 32,621 + MPMX19_06282 0.82 -1.1 32,621 + MPMX19_06282 0.82 -1.4 32,621 + MPMX19_06282 0.82 +0.7 32,621 + MPMX19_06282 0.82 +0.6 32,621 + MPMX19_06282 0.82 +0.5 32,621 + MPMX19_06282 0.82 +0.1 32,621 + MPMX19_06282 0.82 +1.1 32,621 + MPMX19_06282 0.82 -0.3 32,621 + MPMX19_06282 0.82 -1.3 32,622 + MPMX19_06282 0.82 -1.1 32,622 - MPMX19_06282 0.82 -0.1 32,622 - MPMX19_06282 0.82 -0.2 32,622 - MPMX19_06282 0.82 +1.1 32,622 - MPMX19_06282 0.82 -0.3 32,622 - MPMX19_06282 0.82 +1.3 32,622 - MPMX19_06282 0.82 -0.4 32,675 + MPMX19_06282 0.84 -0.9 32,675 + MPMX19_06282 0.84 -0.1 32,675 + MPMX19_06282 0.84 -0.5 32,675 + MPMX19_06282 0.84 -0.3 32,675 + MPMX19_06282 0.84 -0.3 32,675 + MPMX19_06282 0.84 -1.2 32,675 + MPMX19_06282 0.84 +0.1 32,676 - MPMX19_06282 0.84 +0.9 32,676 - MPMX19_06282 0.84 -0.3 32,676 - MPMX19_06282 0.84 +0.4 32,676 - MPMX19_06282 0.84 +0.2 32,760 - MPMX19_06282 0.88 +0.6 32,795 + MPMX19_06282 0.89 +0.5 32,795 + MPMX19_06282 0.89 -0.3 32,795 + MPMX19_06282 0.89 +0.1 32,796 - MPMX19_06282 0.89 -0.6 32,831 + -1.3 32,832 - -0.4 32,832 - -0.6 32,894 + -0.1 32,895 - -0.2 32,896 + -0.6 32,896 + -0.7 33,134 - -0.1 33,198 - -2.0 33,295 + +0.7 33,295 + -0.9 33,295 + +1.5 33,295 + +0.9 33,295 + +1.9 33,295 + +0.2 33,296 - +0.9 33,296 - -0.1 33,296 - -0.1 33,296 - -1.6 33,296 - +0.3 33,296 - -0.8 33,296 - +1.4 33,296 - -1.0 33,332 + +1.7 33,332 + -1.0 33,332 + +0.1 33,333 - +0.7 33,333 - +1.0 33,333 - -0.6 33,333 - -0.1 33,333 - +0.4 33,333 - -0.4 33,333 - +0.5 33,349 - -2.4 33,404 + -1.8 33,404 + -0.2 33,404 + -0.7 33,404 + -1.4 33,404 + -0.2 33,404 + -0.1 33,405 - -0.9 33,405 - -1.1 33,405 - +0.1 33,405 - +0.9 33,405 - +0.2 33,405 - -0.9 33,427 + +0.5 33,427 + -0.3 33,427 + +1.2 33,427 + -1.1 33,428 - -1.1 33,428 - +0.3 33,428 - +1.7 33,428 - -1.1 33,474 + -2.2 33,474 + -1.6 33,474 + -0.3 33,475 - -0.4 33,541 + +0.3 33,541 + +0.6 33,541 + +0.7 33,541 + -0.5 33,541 + -0.3 33,542 - +0.5 33,542 - -1.6 33,542 - -0.5 33,542 - -0.0 33,542 - +1.9 33,976 + MPMX19_06283 0.29 -1.4 33,976 + MPMX19_06283 0.29 +0.4 33,976 + MPMX19_06283 0.29 -0.7 33,976 + MPMX19_06283 0.29 +1.3 33,976 + MPMX19_06283 0.29 +0.4 33,977 - MPMX19_06283 0.29 -0.5 33,977 - MPMX19_06283 0.29 +0.2 33,977 - MPMX19_06283 0.29 +0.4 33,977 - MPMX19_06283 0.29 -0.1 33,977 - MPMX19_06283 0.29 -1.4 33,977 - MPMX19_06283 0.29 -0.3 33,977 - MPMX19_06283 0.29 -0.5 33,978 - MPMX19_06283 0.29 +0.2 34,060 + MPMX19_06283 0.34 -1.6 34,070 - MPMX19_06283 0.35 -0.9 34,492 + MPMX19_06283 0.60 +0.1 34,492 + MPMX19_06283 0.60 -0.6 34,492 + MPMX19_06283 0.60 +1.1 34,493 - MPMX19_06283 0.61 -2.0 34,493 - MPMX19_06283 0.61 -0.1 34,975 + MPMX19_06283 0.90 +0.6 35,049 + -0.9 35,049 + +0.1 35,049 + +0.3 35,050 - -2.3 35,050 - -0.1 35,050 - +0.5 35,062 + +0.7 35,063 - +0.7 35,069 + -1.1 35,070 - +0.3 35,070 - -0.7 35,275 - -0.2 35,344 + -0.6 35,345 - +0.7 35,345 - +0.4 35,345 - +0.4 35,345 - +0.1 35,345 - +0.7 35,415 + -1.9 35,415 + -1.6 35,415 + +0.8 35,415 + -1.1 35,416 - +0.5 35,416 - -0.6 35,416 - -0.5 35,416 - -0.9 35,442 + MPMX19_06284 0.11 +0.1 35,442 + MPMX19_06284 0.11 +0.1 35,442 + MPMX19_06284 0.11 +0.3 35,442 + MPMX19_06284 0.11 +0.1 35,442 + MPMX19_06284 0.11 -0.3 35,442 + MPMX19_06284 0.11 -1.4 35,442 + MPMX19_06284 0.11 +0.4 35,442 + MPMX19_06284 0.11 -0.8 35,442 + MPMX19_06284 0.11 -2.2 35,442 + MPMX19_06284 0.11 -1.4 35,442 + MPMX19_06284 0.11 -0.3 35,442 + MPMX19_06284 0.11 -1.1 35,442 + MPMX19_06284 0.11 -0.3 35,442 + MPMX19_06284 0.11 +0.4 35,443 - MPMX19_06284 0.11 +0.6 35,443 - MPMX19_06284 0.11 +0.6 35,443 - MPMX19_06284 0.11 -0.1 35,443 - MPMX19_06284 0.11 +0.7 35,443 - MPMX19_06284 0.11 +0.2 35,443 - MPMX19_06284 0.11 -1.5 35,443 - MPMX19_06284 0.11 -1.0 35,443 - MPMX19_06284 0.11 -0.1 35,443 - MPMX19_06284 0.11 +0.8 35,443 - MPMX19_06284 0.11 -0.9 35,443 - MPMX19_06284 0.11 +0.1 35,491 - MPMX19_06284 0.19 +1.1 35,631 + MPMX19_06284 0.40 +0.3 35,757 + MPMX19_06284 0.59 -0.2 35,757 + MPMX19_06284 0.59 +0.7 35,757 + MPMX19_06284 0.59 +1.3 35,757 + MPMX19_06284 0.59 -0.1 35,757 + MPMX19_06284 0.59 +0.9 35,757 + MPMX19_06284 0.59 -0.6 35,757 + MPMX19_06284 0.59 +0.7 35,758 - MPMX19_06284 0.59 -1.6 35,758 - MPMX19_06284 0.59 +0.4 35,758 - MPMX19_06284 0.59 -0.0 35,758 - MPMX19_06284 0.59 +0.5 35,758 - MPMX19_06284 0.59 +0.1 35,758 - MPMX19_06284 0.59 +0.5 35,758 - MPMX19_06284 0.59 +0.4 35,758 - MPMX19_06284 0.59 +0.7 35,758 - MPMX19_06284 0.59 -1.1 35,758 - MPMX19_06284 0.59 -0.5 35,802 + MPMX19_06284 0.65 +1.7 35,802 + MPMX19_06284 0.65 +0.7 35,829 - MPMX19_06284 0.70 +0.6 35,829 - MPMX19_06284 0.70 -0.3 35,829 - MPMX19_06284 0.70 -1.1 35,892 + MPMX19_06284 0.79 -0.6 35,892 + MPMX19_06284 0.79 -1.6 35,892 + MPMX19_06284 0.79 -0.1 35,892 + MPMX19_06284 0.79 -1.2 35,892 + MPMX19_06284 0.79 +1.7 35,892 + MPMX19_06284 0.79 -0.5 35,892 + MPMX19_06284 0.79 -0.2 35,892 + MPMX19_06284 0.79 +0.9 35,892 + MPMX19_06284 0.79 -0.1 35,892 + MPMX19_06284 0.79 +0.1 35,892 + MPMX19_06284 0.79 -1.1 35,892 + MPMX19_06284 0.79 +1.1 35,892 + MPMX19_06284 0.79 -0.9 35,892 + MPMX19_06284 0.79 -1.3 35,892 + MPMX19_06284 0.79 -0.4 35,892 + MPMX19_06284 0.79 -1.1 35,892 + MPMX19_06284 0.79 +1.3 35,893 - MPMX19_06284 0.79 -0.4 35,893 - MPMX19_06284 0.79 -2.5 35,893 - MPMX19_06284 0.79 +0.9 35,893 - MPMX19_06284 0.79 -0.1 35,893 - MPMX19_06284 0.79 -0.6 35,893 - MPMX19_06284 0.79 +1.6 35,893 - MPMX19_06284 0.79 -1.7 35,893 - MPMX19_06284 0.79 -1.5 35,893 - MPMX19_06284 0.79 -1.5 35,893 - MPMX19_06284 0.79 -0.9 35,984 + -0.1 35,984 + +0.4 35,984 + +0.4 35,984 + -1.5 35,984 + +2.9 36,132 + -1.1 36,132 + -0.6 36,132 + -0.1 36,132 + +0.4 36,132 + +0.4 36,133 - -0.5
Or see this region's nucleotide sequence