Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06265 and MPMX19_06266 are separated by 130 nucleotides MPMX19_06266 and MPMX19_06267 are separated by 433 nucleotides MPMX19_06267 and MPMX19_06268 are separated by 92 nucleotides MPMX19_06268 and MPMX19_06269 are separated by 6 nucleotides
MPMX19_06265: MPMX19_06265 - hypothetical protein, at 16,571 to 17,194
_06265
MPMX19_06266: MPMX19_06266 - hypothetical protein, at 17,325 to 17,687
_06266
MPMX19_06267: MPMX19_06267 - hypothetical protein, at 18,121 to 18,384
_06267
MPMX19_06268: MPMX19_06268 - hypothetical protein, at 18,477 to 19,112
_06268
MPMX19_06269: MPMX19_06269 - IS110 family transposase ISHne4, at 19,119 to 19,652
_06269
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.412 kb on + strand, within MPMX19_06266 at 17.413 kb on - strand, within MPMX19_06266 at 17.413 kb on - strand, within MPMX19_06266 at 17.567 kb on + strand, within MPMX19_06266 at 17.921 kb on + strand at 17.922 kb on - strand at 17.922 kb on - strand at 17.995 kb on + strand at 18.003 kb on + strand at 18.003 kb on + strand at 18.003 kb on + strand at 18.003 kb on + strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.058 kb on - strand at 18.123 kb on - strand at 18.132 kb on + strand at 18.132 kb on + strand at 18.132 kb on + strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.139 kb on - strand at 18.139 kb on - strand at 18.218 kb on + strand, within MPMX19_06267 at 18.218 kb on + strand, within MPMX19_06267 at 18.218 kb on + strand, within MPMX19_06267 at 18.218 kb on + strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.268 kb on + strand, within MPMX19_06267 at 18.397 kb on - strand at 18.397 kb on - strand at 18.470 kb on + strand at 18.471 kb on - strand at 18.527 kb on + strand at 18.527 kb on + strand at 18.528 kb on - strand at 18.528 kb on - strand at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.763 kb on + strand, within MPMX19_06268 at 18.763 kb on + strand, within MPMX19_06268 at 18.763 kb on + strand, within MPMX19_06268 at 18.764 kb on - strand, within MPMX19_06268 at 18.764 kb on - strand, within MPMX19_06268 at 18.886 kb on + strand, within MPMX19_06268 at 18.886 kb on + strand, within MPMX19_06268 at 18.887 kb on - strand, within MPMX19_06268 at 18.887 kb on - strand, within MPMX19_06268 at 18.889 kb on + strand, within MPMX19_06268 at 18.889 kb on + strand, within MPMX19_06268 at 18.889 kb on + strand, within MPMX19_06268 at 18.890 kb on - strand, within MPMX19_06268 at 19.116 kb on + strand at 19.141 kb on + strand at 19.215 kb on - strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.316 kb on + strand, within MPMX19_06269 at 19.317 kb on - strand, within MPMX19_06269 at 19.317 kb on - strand, within MPMX19_06269 at 19.380 kb on + strand, within MPMX19_06269 at 19.381 kb on - strand, within MPMX19_06269 at 19.381 kb on - strand, within MPMX19_06269 at 19.381 kb on - strand, within MPMX19_06269
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 17,412 + MPMX19_06266 0.24 +0.7 17,413 - MPMX19_06266 0.24 +0.1 17,413 - MPMX19_06266 0.24 -0.8 17,567 + MPMX19_06266 0.67 -1.8 17,921 + -1.6 17,922 - -0.3 17,922 - +0.5 17,995 + -0.1 18,003 + -0.7 18,003 + -0.9 18,003 + -0.9 18,003 + +0.7 18,004 - +0.9 18,004 - -0.7 18,004 - -1.1 18,004 - +0.9 18,004 - -1.4 18,004 - +0.6 18,041 + +1.3 18,041 + -1.0 18,041 + -0.3 18,041 + +0.3 18,041 + +0.1 18,041 + -0.6 18,042 - -0.6 18,042 - -0.1 18,042 - +0.9 18,042 - -1.6 18,042 - +0.1 18,058 - +0.5 18,123 - -1.5 18,132 + -0.7 18,132 + -0.6 18,132 + +0.2 18,133 - -2.4 18,133 - +0.3 18,133 - -0.1 18,133 - -0.2 18,133 - +1.1 18,139 - -1.5 18,139 - -0.7 18,218 + MPMX19_06267 0.37 -1.1 18,218 + MPMX19_06267 0.37 -1.1 18,218 + MPMX19_06267 0.37 -1.1 18,218 + MPMX19_06267 0.37 -0.2 18,219 - MPMX19_06267 0.37 -0.8 18,219 - MPMX19_06267 0.37 -0.9 18,219 - MPMX19_06267 0.37 -0.4 18,219 - MPMX19_06267 0.37 -0.8 18,268 + MPMX19_06267 0.56 +0.9 18,397 - -0.9 18,397 - -0.3 18,470 + +0.1 18,471 - -0.7 18,527 + -1.3 18,527 + +0.1 18,528 - +0.2 18,528 - +0.1 18,560 + MPMX19_06268 0.13 +0.9 18,560 + MPMX19_06268 0.13 -0.4 18,560 + MPMX19_06268 0.13 +0.6 18,560 + MPMX19_06268 0.13 -0.5 18,560 + MPMX19_06268 0.13 +0.8 18,560 + MPMX19_06268 0.13 -0.0 18,560 + MPMX19_06268 0.13 +0.8 18,560 + MPMX19_06268 0.13 +0.6 18,560 + MPMX19_06268 0.13 -1.5 18,560 + MPMX19_06268 0.13 +2.3 18,561 - MPMX19_06268 0.13 +0.6 18,561 - MPMX19_06268 0.13 -2.3 18,561 - MPMX19_06268 0.13 +0.1 18,561 - MPMX19_06268 0.13 +1.1 18,727 + MPMX19_06268 0.39 -0.6 18,727 + MPMX19_06268 0.39 +1.1 18,727 + MPMX19_06268 0.39 +0.2 18,727 + MPMX19_06268 0.39 +0.8 18,727 + MPMX19_06268 0.39 +0.3 18,727 + MPMX19_06268 0.39 +0.0 18,728 - MPMX19_06268 0.39 -2.1 18,728 - MPMX19_06268 0.39 -2.6 18,728 - MPMX19_06268 0.39 -0.5 18,728 - MPMX19_06268 0.39 -0.3 18,728 - MPMX19_06268 0.39 -0.3 18,728 - MPMX19_06268 0.39 +0.7 18,763 + MPMX19_06268 0.45 -0.9 18,763 + MPMX19_06268 0.45 -0.8 18,763 + MPMX19_06268 0.45 -1.1 18,764 - MPMX19_06268 0.45 -0.8 18,764 - MPMX19_06268 0.45 -0.5 18,886 + MPMX19_06268 0.64 +0.3 18,886 + MPMX19_06268 0.64 -1.6 18,887 - MPMX19_06268 0.64 -0.2 18,887 - MPMX19_06268 0.64 -0.5 18,889 + MPMX19_06268 0.65 +0.5 18,889 + MPMX19_06268 0.65 -2.3 18,889 + MPMX19_06268 0.65 -0.6 18,890 - MPMX19_06268 0.65 -0.9 19,116 + -2.0 19,141 + -0.1 19,215 - MPMX19_06269 0.18 -0.8 19,297 + MPMX19_06269 0.33 +1.1 19,297 + MPMX19_06269 0.33 -2.1 19,297 + MPMX19_06269 0.33 -0.3 19,297 + MPMX19_06269 0.33 -0.7 19,297 + MPMX19_06269 0.33 -0.0 19,298 - MPMX19_06269 0.34 +1.7 19,298 - MPMX19_06269 0.34 -0.6 19,298 - MPMX19_06269 0.34 +0.1 19,298 - MPMX19_06269 0.34 +0.1 19,298 - MPMX19_06269 0.34 +1.5 19,298 - MPMX19_06269 0.34 +0.5 19,316 + MPMX19_06269 0.37 +0.9 19,317 - MPMX19_06269 0.37 +0.5 19,317 - MPMX19_06269 0.37 -1.3 19,380 + MPMX19_06269 0.49 +0.3 19,381 - MPMX19_06269 0.49 +0.4 19,381 - MPMX19_06269 0.49 +1.7 19,381 - MPMX19_06269 0.49 -0.0
Or see this region's nucleotide sequence