Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06254

Experiment: NL-CCM, start OD=0.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.1
3,267	+				+0.7
3,267	+				+0.9
3,267	+				-0.6
3,267	+				+1.1
3,267	+				-1.2
3,267	+				+0.3
3,267	+				+0.7
3,267	+				+0.5
3,267	+				-0.1
3,267	+				-1.8
3,267	+				+1.1
3,267	+				+0.7
3,267	+				+0.7
3,267	+				+0.7
3,267	+				-1.0
3,267	+				+0.4
3,267	+				-0.4
3,267	+				+0.4
3,267	+				+0.1
3,267	+				+1.0
3,267	+				+1.4
3,268	-				-2.2
3,268	-				-0.3
3,268	-				-1.5
3,268	-				-0.4
3,268	-				-1.2
3,268	-				-0.7
3,268	-				-0.1
3,268	-				+0.9
3,268	-				+0.2
3,269	+				+0.9
3,269	+				-0.4
3,269	+				-0.1
3,269	+				+0.1
3,269	+				+0.7
3,269	+				-0.2
3,269	+				-1.6
3,269	+				-0.8
3,269	+				-0.4
3,269	+				-0.3
3,269	+				-0.3
3,270	-				-0.4
3,270	-				-0.3
3,270	-				-0.3
3,270	-				-1.6
3,310	+		MPMX19_06252	0.11	-0.6
3,311	-		MPMX19_06252	0.11	-0.2
3,587	+				-0.6
3,587	+				-2.5
3,588	-				+1.9
3,588	-				+0.1
3,588	-				-0.6
3,589	+				+0.6
3,589	+				-2.0
3,589	+				-1.3
3,589	+				+0.8
3,589	+				+1.2
3,589	+				-1.2
3,590	-				-0.7
3,590	-				-1.1
3,654	+		MPMX19_06253	0.18	+0.3
3,655	-		MPMX19_06253	0.18	+0.2
3,670	+		MPMX19_06253	0.25	-1.6
3,671	-		MPMX19_06253	0.26	-0.8
3,671	-		MPMX19_06253	0.26	+0.9
3,671	-		MPMX19_06253	0.26	-0.3
3,673	-		MPMX19_06253	0.27	-1.9
3,813	+				-2.8
3,814	-				+1.3
4,033	-				+0.5
4,133	+				-1.4
4,133	+				+0.5
4,172	+				+1.3
4,228	+				-1.3
4,360	+				-0.8
4,360	+				-2.0
4,360	+				+0.9
4,360	+				+0.6
4,360	+				+0.4
4,361	-				-0.2
4,846	+		MPMX19_06254	0.30	-0.9
4,846	+		MPMX19_06254	0.30	+0.3
4,846	+		MPMX19_06254	0.30	+0.8
4,846	+		MPMX19_06254	0.30	-0.4
4,847	-		MPMX19_06254	0.30	-0.9
4,847	-		MPMX19_06254	0.30	-1.6
4,912	+		MPMX19_06254	0.33	-3.2
4,912	+		MPMX19_06254	0.33	-1.5
4,912	+		MPMX19_06254	0.33	+0.7
4,912	+		MPMX19_06254	0.33	-1.0
4,913	-		MPMX19_06254	0.33	-0.9
4,913	-		MPMX19_06254	0.33	+0.0
4,913	-		MPMX19_06254	0.33	-0.2
4,913	-		MPMX19_06254	0.33	-1.8
4,975	+		MPMX19_06254	0.36	-0.6
4,975	+		MPMX19_06254	0.36	-0.8
4,975	+		MPMX19_06254	0.36	-0.3
4,975	+		MPMX19_06254	0.36	+0.5
4,976	-		MPMX19_06254	0.36	-0.2
4,976	-		MPMX19_06254	0.36	+1.2
4,976	-		MPMX19_06254	0.36	-0.3
4,976	-		MPMX19_06254	0.36	-1.0
4,976	-		MPMX19_06254	0.36	-1.5
4,976	-		MPMX19_06254	0.36	-0.3
4,976	-		MPMX19_06254	0.36	-0.5
4,976	-		MPMX19_06254	0.36	-1.9
5,515	+		MPMX19_06254	0.63	+0.5
5,601	-		MPMX19_06254	0.67	-0.1
5,941	+		MPMX19_06254	0.84	+0.8
5,941	+		MPMX19_06254	0.84	-0.7
5,941	+		MPMX19_06254	0.84	+1.1
5,942	-		MPMX19_06254	0.84	-1.0
5,942	-		MPMX19_06254	0.84	-1.1
5,989	+		MPMX19_06254	0.86	-0.9
6,045	-		MPMX19_06254	0.89	+0.1
6,358	-				+0.4
6,358	-				-0.3
6,359	+				-0.2
6,360	-				-0.9
6,367	+				+0.7
6,367	+				+1.3
6,368	-				+0.7
6,374	+				+0.0
6,374	+				-0.3
6,375	-				+0.2
6,380	+				-0.4
6,388	+				-1.6
6,389	-				+0.3
6,393	+				-0.8
6,393	+				-0.0
6,393	+				-1.0
6,393	+				-0.1
6,393	+				-0.4
6,393	+				-1.6
6,393	+				+0.1
6,394	-				-0.6
6,394	-				+0.1
6,394	-				+1.7
6,394	-				-1.3
6,394	-				-0.6
6,394	-				+0.7
6,394	-				+0.0
6,394	-				-1.0
6,394	-				-2.0
6,394	-				+0.4
6,396	+				+1.1
6,396	+				-0.1
6,396	+				-1.5
6,396	+				-0.8
6,396	+				-0.2
6,396	+				-0.6
6,397	-				-1.7
6,397	-				-1.5
6,397	-				-0.8
6,397	-				-0.3
6,397	-				+0.7
6,401	+				-1.0
6,401	+				-0.8
6,401	+				-0.6
6,402	-				-1.6
6,402	-				-0.4
6,402	-				-0.4
6,409	+				+1.4
6,513	+				-1.1
6,514	-				+0.0
6,661	+				-1.5
6,661	+				-2.1
6,661	+				-1.6
6,661	+				-0.7
6,662	-				-0.9
6,662	-				+0.4
6,662	-				+0.0
6,662	-				+0.9
6,662	-				-0.1
6,662	-				+0.1
6,662	-				+0.0
6,736	+				-0.9
6,752	-				-1.4
6,825	-				+0.3
6,850	+				-0.7
6,850	+				+0.5
6,850	+				-0.7
6,850	+				-1.1
6,850	+				-0.3
6,851	-				-1.1
6,896	+				-0.8
6,896	+				+0.4
6,897	-				+0.1
6,897	-				+0.1
6,897	-				+0.3
7,068	+				-0.4
7,068	+				+1.0
7,068	+				-2.0
7,068	+				-1.2
7,068	+				-0.7
7,068	+				+0.1
7,068	+				-0.2
7,068	+				-0.3
7,068	+				+0.5
7,069	-				-0.2
7,069	-				+0.9
7,069	-				+0.3
7,069	-				-0.6
7,069	-				-1.6
7,069	-				-0.3
7,069	-				-1.9
7,069	-				-0.0
7,069	-				-0.1
7,080	+		MPMX19_06255	0.10	+1.2
7,121	+		MPMX19_06255	0.14	-0.4