Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06228 and MPMX19_06229 are separated by 93 nucleotides MPMX19_06229 and MPMX19_06230 are separated by 374 nucleotides
MPMX19_06228: MPMX19_06228 - hypothetical protein, at 414,115 to 415,695
_06228
MPMX19_06229: MPMX19_06229 - L-arabonate dehydratase, at 415,789 to 417,627
_06229
MPMX19_06230: MPMX19_06230 - hypothetical protein, at 418,002 to 418,658
_06230
Position (kb) 415
416
417
418 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.754 kb on + strand at 415.754 kb on + strand at 415.754 kb on + strand at 415.755 kb on - strand at 415.755 kb on - strand at 415.755 kb on - strand at 415.755 kb on - strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.921 kb on + strand at 415.921 kb on + strand at 416.149 kb on + strand, within MPMX19_06229 at 416.150 kb on - strand, within MPMX19_06229 at 416.150 kb on - strand, within MPMX19_06229 at 416.380 kb on + strand, within MPMX19_06229 at 416.380 kb on + strand, within MPMX19_06229 at 416.381 kb on - strand, within MPMX19_06229 at 416.381 kb on - strand, within MPMX19_06229 at 416.428 kb on + strand, within MPMX19_06229 at 416.428 kb on + strand, within MPMX19_06229 at 416.429 kb on - strand, within MPMX19_06229 at 416.429 kb on - strand, within MPMX19_06229 at 416.429 kb on - strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.546 kb on - strand, within MPMX19_06229 at 416.546 kb on - strand, within MPMX19_06229 at 416.546 kb on - strand, within MPMX19_06229 at 416.546 kb on - strand, within MPMX19_06229 at 416.785 kb on + strand, within MPMX19_06229 at 416.785 kb on + strand, within MPMX19_06229 at 416.786 kb on - strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.580 kb on + strand at 417.580 kb on + strand at 417.580 kb on + strand at 417.580 kb on + strand at 417.580 kb on + strand at 417.581 kb on - strand at 417.581 kb on - strand at 417.581 kb on - strand at 417.581 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.777 kb on + strand at 417.777 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.906 kb on - strand at 417.912 kb on + strand at 417.943 kb on + strand at 417.944 kb on - strand at 418.281 kb on - strand, within MPMX19_06230 at 418.281 kb on - strand, within MPMX19_06230 at 418.281 kb on - strand, within MPMX19_06230 at 418.513 kb on + strand, within MPMX19_06230 at 418.522 kb on + strand, within MPMX19_06230 at 418.613 kb on + strand at 418.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 415,754 + -0.6 415,754 + +0.1 415,754 + -1.2 415,755 - -0.4 415,755 - -1.2 415,755 - -0.9 415,755 - +0.2 415,788 + +0.2 415,788 + -0.7 415,788 + -0.9 415,788 + -1.0 415,788 + -0.1 415,788 + -1.1 415,788 + +0.9 415,788 + -0.4 415,788 + +0.6 415,788 + -2.2 415,788 + -0.4 415,788 + -0.4 415,789 - -1.4 415,789 - -0.7 415,789 - -0.7 415,789 - -1.5 415,789 - -0.1 415,789 - -0.9 415,789 - +0.1 415,789 - +0.6 415,789 - -1.1 415,789 - +0.8 415,789 - -0.4 415,909 + +0.7 415,909 + -1.0 415,909 + -1.2 415,909 + -1.9 415,909 + -0.2 415,909 + +1.0 415,909 + +1.5 415,909 + +1.6 415,910 - -0.6 415,910 - +0.1 415,910 - -0.8 415,910 - -0.1 415,910 - -1.4 415,910 - +0.9 415,910 - -0.6 415,910 - +0.5 415,910 - +0.8 415,921 + +0.6 415,921 + +0.2 416,149 + MPMX19_06229 0.20 +0.9 416,150 - MPMX19_06229 0.20 -1.2 416,150 - MPMX19_06229 0.20 +0.6 416,380 + MPMX19_06229 0.32 +0.6 416,380 + MPMX19_06229 0.32 +0.4 416,381 - MPMX19_06229 0.32 +0.1 416,381 - MPMX19_06229 0.32 +0.3 416,428 + MPMX19_06229 0.35 -0.4 416,428 + MPMX19_06229 0.35 -0.4 416,429 - MPMX19_06229 0.35 -1.2 416,429 - MPMX19_06229 0.35 +0.6 416,429 - MPMX19_06229 0.35 -0.0 416,545 + MPMX19_06229 0.41 -0.2 416,545 + MPMX19_06229 0.41 +0.9 416,545 + MPMX19_06229 0.41 +0.5 416,545 + MPMX19_06229 0.41 +0.2 416,545 + MPMX19_06229 0.41 -0.8 416,545 + MPMX19_06229 0.41 +0.7 416,545 + MPMX19_06229 0.41 -1.0 416,546 - MPMX19_06229 0.41 +1.4 416,546 - MPMX19_06229 0.41 +0.6 416,546 - MPMX19_06229 0.41 +0.1 416,546 - MPMX19_06229 0.41 -0.4 416,785 + MPMX19_06229 0.54 -0.4 416,785 + MPMX19_06229 0.54 -0.7 416,786 - MPMX19_06229 0.54 -0.7 417,055 + MPMX19_06229 0.69 +1.0 417,055 + MPMX19_06229 0.69 +0.5 417,055 + MPMX19_06229 0.69 -1.2 417,055 + MPMX19_06229 0.69 +0.9 417,055 + MPMX19_06229 0.69 -1.7 417,056 - MPMX19_06229 0.69 +0.2 417,056 - MPMX19_06229 0.69 +0.8 417,056 - MPMX19_06229 0.69 +0.6 417,056 - MPMX19_06229 0.69 -0.8 417,056 - MPMX19_06229 0.69 +1.4 417,056 - MPMX19_06229 0.69 -0.1 417,056 - MPMX19_06229 0.69 +0.1 417,124 + MPMX19_06229 0.73 +1.1 417,124 + MPMX19_06229 0.73 -0.7 417,124 + MPMX19_06229 0.73 +0.4 417,124 + MPMX19_06229 0.73 +2.1 417,124 + MPMX19_06229 0.73 +0.8 417,124 + MPMX19_06229 0.73 -0.7 417,124 + MPMX19_06229 0.73 -0.9 417,125 - MPMX19_06229 0.73 +2.1 417,125 - MPMX19_06229 0.73 +0.1 417,125 - MPMX19_06229 0.73 -0.7 417,125 - MPMX19_06229 0.73 -1.1 417,125 - MPMX19_06229 0.73 +1.4 417,125 - MPMX19_06229 0.73 +1.2 417,125 - MPMX19_06229 0.73 -1.4 417,125 - MPMX19_06229 0.73 +0.5 417,125 - MPMX19_06229 0.73 +0.6 417,125 - MPMX19_06229 0.73 -1.7 417,125 - MPMX19_06229 0.73 +1.2 417,166 + MPMX19_06229 0.75 -0.4 417,166 + MPMX19_06229 0.75 +1.1 417,166 + MPMX19_06229 0.75 -2.3 417,166 + MPMX19_06229 0.75 +0.1 417,166 + MPMX19_06229 0.75 +0.5 417,166 + MPMX19_06229 0.75 -0.0 417,166 + MPMX19_06229 0.75 -0.6 417,167 - MPMX19_06229 0.75 +0.3 417,167 - MPMX19_06229 0.75 +0.2 417,167 - MPMX19_06229 0.75 -0.1 417,167 - MPMX19_06229 0.75 -1.2 417,167 - MPMX19_06229 0.75 -1.2 417,167 - MPMX19_06229 0.75 +0.1 417,167 - MPMX19_06229 0.75 +0.1 417,167 - MPMX19_06229 0.75 +0.5 417,580 + +1.2 417,580 + +0.6 417,580 + -0.4 417,580 + +0.6 417,580 + -0.2 417,581 - -0.9 417,581 - +1.5 417,581 - -0.5 417,581 - -0.9 417,770 - -1.2 417,770 - -0.2 417,770 - -0.9 417,770 - +0.1 417,770 - +0.6 417,777 + -1.3 417,777 + +1.6 417,899 + -1.2 417,899 + -0.4 417,899 + -1.9 417,899 + +0.1 417,899 + +0.6 417,899 + -0.8 417,899 + +0.1 417,899 + +0.2 417,900 - +0.6 417,900 - -1.5 417,900 - -1.4 417,900 - +0.3 417,900 - -0.4 417,900 - +0.4 417,900 - -0.6 417,900 - -0.8 417,900 - -1.2 417,906 - +1.2 417,912 + -0.9 417,943 + -1.5 417,944 - +0.4 418,281 - MPMX19_06230 0.42 +0.9 418,281 - MPMX19_06230 0.42 +0.9 418,281 - MPMX19_06230 0.42 -0.9 418,513 + MPMX19_06230 0.78 -0.3 418,522 + MPMX19_06230 0.79 -1.2 418,613 + +0.1 418,614 - +0.8
Or see this region's nucleotide sequence