Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06139

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06137 and MPMX19_06138 are separated by 146 nucleotidesMPMX19_06138 and MPMX19_06139 are separated by 156 nucleotidesMPMX19_06139 and MPMX19_06140 are separated by 5 nucleotides MPMX19_06137: MPMX19_06137 - hypothetical protein, at 324,733 to 325,218 _06137 MPMX19_06138: MPMX19_06138 - Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase, at 325,365 to 325,949 _06138 MPMX19_06139: MPMX19_06139 - Replicative DNA helicase, at 326,106 to 327,611 _06139 MPMX19_06140: MPMX19_06140 - Alanine racemase, biosynthetic, at 327,617 to 328,738 _06140 Position (kb) 326 327 328Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 325.246 kb on + strandat 325.246 kb on + strandat 325.247 kb on - strandat 325.247 kb on - strandat 325.247 kb on - strandat 325.247 kb on - strandat 325.247 kb on - strandat 325.289 kb on + strandat 325.289 kb on + strandat 325.289 kb on + strandat 325.290 kb on - strandat 325.331 kb on + strandat 325.331 kb on + strandat 325.332 kb on - strandat 325.393 kb on - strandat 325.393 kb on - strandat 325.393 kb on - strandat 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.485 kb on + strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.486 kb on - strand, within MPMX19_06138at 325.785 kb on + strand, within MPMX19_06138at 325.786 kb on - strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.817 kb on + strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.818 kb on - strand, within MPMX19_06138at 325.861 kb on - strand, within MPMX19_06138at 326.093 kb on + strandat 326.093 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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325,246 + -0.9
325,246 + +0.4
325,247 - +0.4
325,247 - -1.5
325,247 - -2.4
325,247 - +0.4
325,247 - +0.8
325,289 + +0.5
325,289 + -0.9
325,289 + +0.6
325,290 - -0.4
325,331 + +0.5
325,331 + +1.0
325,332 - -0.4
325,393 - +0.1
325,393 - -0.6
325,393 - -1.5
325,485 + MPMX19_06138 0.21 -0.8
325,485 + MPMX19_06138 0.21 +0.2
325,485 + MPMX19_06138 0.21 +1.1
325,485 + MPMX19_06138 0.21 -0.7
325,485 + MPMX19_06138 0.21 -0.7
325,485 + MPMX19_06138 0.21 +0.9
325,485 + MPMX19_06138 0.21 +0.2
325,485 + MPMX19_06138 0.21 -2.9
325,485 + MPMX19_06138 0.21 +0.6
325,486 - MPMX19_06138 0.21 +0.7
325,486 - MPMX19_06138 0.21 -0.7
325,486 - MPMX19_06138 0.21 +0.8
325,486 - MPMX19_06138 0.21 +1.8
325,486 - MPMX19_06138 0.21 +1.3
325,486 - MPMX19_06138 0.21 +2.1
325,486 - MPMX19_06138 0.21 +1.2
325,486 - MPMX19_06138 0.21 -0.1
325,486 - MPMX19_06138 0.21 -0.9
325,486 - MPMX19_06138 0.21 +0.1
325,785 + MPMX19_06138 0.72 +0.6
325,786 - MPMX19_06138 0.72 -0.9
325,817 + MPMX19_06138 0.77 +0.6
325,817 + MPMX19_06138 0.77 +0.6
325,817 + MPMX19_06138 0.77 +1.1
325,817 + MPMX19_06138 0.77 -1.4
325,817 + MPMX19_06138 0.77 +0.3
325,817 + MPMX19_06138 0.77 +0.4
325,817 + MPMX19_06138 0.77 -0.9
325,817 + MPMX19_06138 0.77 +0.2
325,817 + MPMX19_06138 0.77 -0.2
325,818 - MPMX19_06138 0.77 -0.2
325,818 - MPMX19_06138 0.77 -0.7
325,818 - MPMX19_06138 0.77 +0.3
325,818 - MPMX19_06138 0.77 -1.4
325,818 - MPMX19_06138 0.77 +0.3
325,818 - MPMX19_06138 0.77 +1.6
325,818 - MPMX19_06138 0.77 +1.6
325,818 - MPMX19_06138 0.77 -0.4
325,818 - MPMX19_06138 0.77 +0.8
325,818 - MPMX19_06138 0.77 -0.3
325,818 - MPMX19_06138 0.77 +0.8
325,861 - MPMX19_06138 0.85 +1.1
326,093 + -1.4
326,093 + -1.4

Or see this region's nucleotide sequence