Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06112

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06111 and MPMX19_06112 overlap by 4 nucleotidesMPMX19_06112 and MPMX19_06113 are separated by 162 nucleotides MPMX19_06111: MPMX19_06111 - Non-motile and phage-resistance protein, at 296,866 to 298,203 _06111 MPMX19_06112: MPMX19_06112 - hypothetical protein, at 298,200 to 299,336 _06112 MPMX19_06113: MPMX19_06113 - hypothetical protein, at 299,499 to 300,263 _06113 Position (kb) 298 299 300Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.441 kb on - strand, within MPMX19_06111at 297.441 kb on - strand, within MPMX19_06111at 297.441 kb on - strand, within MPMX19_06111at 297.441 kb on - strand, within MPMX19_06111at 297.441 kb on - strand, within MPMX19_06111at 297.441 kb on - strand, within MPMX19_06111at 297.449 kb on + strand, within MPMX19_06111at 297.449 kb on + strand, within MPMX19_06111at 297.449 kb on + strand, within MPMX19_06111at 297.449 kb on + strand, within MPMX19_06111at 297.449 kb on + strand, within MPMX19_06111at 297.450 kb on - strand, within MPMX19_06111at 297.450 kb on - strand, within MPMX19_06111at 297.450 kb on - strand, within MPMX19_06111at 298.282 kb on + strandat 298.282 kb on + strandat 298.282 kb on + strandat 298.282 kb on + strandat 298.282 kb on + strandat 298.282 kb on + strandat 298.282 kb on + strandat 298.283 kb on - strandat 298.283 kb on - strandat 298.283 kb on - strandat 298.283 kb on - strandat 298.283 kb on - strandat 298.295 kb on + strandat 298.295 kb on + strandat 298.295 kb on + strandat 298.296 kb on - strandat 298.348 kb on + strand, within MPMX19_06112at 298.349 kb on - strand, within MPMX19_06112at 298.349 kb on - strand, within MPMX19_06112at 298.349 kb on - strand, within MPMX19_06112at 298.349 kb on - strand, within MPMX19_06112at 298.423 kb on + strand, within MPMX19_06112at 298.423 kb on + strand, within MPMX19_06112at 298.424 kb on - strand, within MPMX19_06112at 298.424 kb on - strand, within MPMX19_06112at 298.424 kb on - strand, within MPMX19_06112at 298.424 kb on - strand, within MPMX19_06112at 299.372 kb on + strandat 299.373 kb on - strandat 299.373 kb on - strandat 299.373 kb on - strandat 299.373 kb on - strandat 299.373 kb on - strandat 299.373 kb on - strandat 299.460 kb on - strandat 299.475 kb on + strandat 299.475 kb on + strandat 299.475 kb on + strandat 299.475 kb on + strandat 299.475 kb on + strandat 299.475 kb on + strandat 299.475 kb on + strandat 299.475 kb on + strandat 299.475 kb on + strandat 299.476 kb on - strandat 299.476 kb on - strandat 299.476 kb on - strandat 299.476 kb on - strandat 299.476 kb on - strandat 299.476 kb on - strandat 299.476 kb on - strandat 299.476 kb on - strandat 299.641 kb on + strand, within MPMX19_06113at 299.641 kb on + strand, within MPMX19_06113at 299.641 kb on + strand, within MPMX19_06113at 299.641 kb on + strand, within MPMX19_06113at 299.641 kb on + strand, within MPMX19_06113at 299.641 kb on + strand, within MPMX19_06113at 299.641 kb on + strand, within MPMX19_06113at 299.641 kb on + strand, within MPMX19_06113at 299.641 kb on + strand, within MPMX19_06113at 299.641 kb on + strand, within MPMX19_06113at 299.641 kb on + strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.642 kb on - strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.647 kb on + strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.648 kb on - strand, within MPMX19_06113at 299.827 kb on + strand, within MPMX19_06113at 299.827 kb on + strand, within MPMX19_06113at 299.827 kb on + strand, within MPMX19_06113at 299.828 kb on - strand, within MPMX19_06113at 299.828 kb on - strand, within MPMX19_06113at 299.828 kb on - strand, within MPMX19_06113at 300.058 kb on + strand, within MPMX19_06113at 300.058 kb on + strand, within MPMX19_06113at 300.058 kb on + strand, within MPMX19_06113at 300.058 kb on + strand, within MPMX19_06113at 300.058 kb on + strand, within MPMX19_06113at 300.058 kb on + strand, within MPMX19_06113at 300.059 kb on - strand, within MPMX19_06113at 300.059 kb on - strand, within MPMX19_06113at 300.061 kb on + strand, within MPMX19_06113at 300.061 kb on + strand, within MPMX19_06113at 300.061 kb on + strand, within MPMX19_06113at 300.061 kb on + strand, within MPMX19_06113at 300.061 kb on + strand, within MPMX19_06113at 300.061 kb on + strand, within MPMX19_06113at 300.061 kb on + strand, within MPMX19_06113at 300.062 kb on - strand, within MPMX19_06113at 300.062 kb on - strand, within MPMX19_06113at 300.062 kb on - strand, within MPMX19_06113at 300.064 kb on + strand, within MPMX19_06113at 300.064 kb on + strand, within MPMX19_06113at 300.064 kb on + strand, within MPMX19_06113at 300.064 kb on + strand, within MPMX19_06113at 300.064 kb on + strand, within MPMX19_06113at 300.064 kb on + strand, within MPMX19_06113at 300.065 kb on - strand, within MPMX19_06113at 300.065 kb on - strand, within MPMX19_06113at 300.065 kb on - strand, within MPMX19_06113at 300.065 kb on - strand, within MPMX19_06113at 300.065 kb on - strand, within MPMX19_06113at 300.065 kb on - strand, within MPMX19_06113at 300.065 kb on - strand, within MPMX19_06113at 300.088 kb on + strand, within MPMX19_06113at 300.088 kb on + strand, within MPMX19_06113at 300.088 kb on + strand, within MPMX19_06113at 300.088 kb on + strand, within MPMX19_06113at 300.088 kb on + strand, within MPMX19_06113at 300.089 kb on - strand, within MPMX19_06113at 300.089 kb on - strand, within MPMX19_06113at 300.089 kb on - strand, within MPMX19_06113at 300.121 kb on + strand, within MPMX19_06113at 300.121 kb on + strand, within MPMX19_06113at 300.121 kb on + strand, within MPMX19_06113at 300.121 kb on + strand, within MPMX19_06113at 300.122 kb on - strand, within MPMX19_06113at 300.293 kb on + strandat 300.293 kb on + strandat 300.293 kb on + strandat 300.294 kb on - strandat 300.294 kb on - strandat 300.294 kb on - strandat 300.296 kb on + strandat 300.296 kb on + strandat 300.296 kb on + strandat 300.296 kb on + strandat 300.296 kb on + strandat 300.296 kb on + strandat 300.296 kb on + strandat 300.296 kb on + strandat 300.296 kb on + strandat 300.296 kb on + strandat 300.297 kb on - strandat 300.297 kb on - strandat 300.297 kb on - strandat 300.297 kb on - strandat 300.297 kb on - strandat 300.297 kb on - strandat 300.300 kb on + strandat 300.300 kb on + strandat 300.300 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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297,440 + MPMX19_06111 0.43 -1.8
297,440 + MPMX19_06111 0.43 -1.2
297,440 + MPMX19_06111 0.43 -0.1
297,440 + MPMX19_06111 0.43 -1.0
297,440 + MPMX19_06111 0.43 -0.7
297,440 + MPMX19_06111 0.43 -1.4
297,440 + MPMX19_06111 0.43 +1.0
297,440 + MPMX19_06111 0.43 -1.3
297,440 + MPMX19_06111 0.43 -0.8
297,441 - MPMX19_06111 0.43 -0.8
297,441 - MPMX19_06111 0.43 -0.8
297,441 - MPMX19_06111 0.43 -0.4
297,441 - MPMX19_06111 0.43 +0.2
297,441 - MPMX19_06111 0.43 -0.2
297,441 - MPMX19_06111 0.43 -0.9
297,449 + MPMX19_06111 0.44 -1.5
297,449 + MPMX19_06111 0.44 -0.1
297,449 + MPMX19_06111 0.44 +0.8
297,449 + MPMX19_06111 0.44 +0.3
297,449 + MPMX19_06111 0.44 -1.7
297,450 - MPMX19_06111 0.44 +0.2
297,450 - MPMX19_06111 0.44 -1.9
297,450 - MPMX19_06111 0.44 -1.7
298,282 + -1.0
298,282 + -0.2
298,282 + -0.7
298,282 + -0.0
298,282 + -1.2
298,282 + +0.7
298,282 + +1.1
298,283 - -0.5
298,283 - -1.1
298,283 - +1.1
298,283 - -0.2
298,283 - +1.6
298,295 + +0.1
298,295 + +0.1
298,295 + +0.3
298,296 - +0.2
298,348 + MPMX19_06112 0.13 +0.2
298,349 - MPMX19_06112 0.13 -0.9
298,349 - MPMX19_06112 0.13 +0.9
298,349 - MPMX19_06112 0.13 +0.2
298,349 - MPMX19_06112 0.13 +0.4
298,423 + MPMX19_06112 0.20 -0.0
298,423 + MPMX19_06112 0.20 -0.7
298,424 - MPMX19_06112 0.20 +0.3
298,424 - MPMX19_06112 0.20 +0.4
298,424 - MPMX19_06112 0.20 +0.3
298,424 - MPMX19_06112 0.20 -1.4
299,372 + -0.1
299,373 - -1.5
299,373 - +0.2
299,373 - -1.4
299,373 - +0.3
299,373 - -0.5
299,373 - -1.7
299,460 - +0.1
299,475 + -2.3
299,475 + +0.6
299,475 + -0.1
299,475 + -0.4
299,475 + -1.5
299,475 + +0.6
299,475 + +0.2
299,475 + -0.1
299,475 + +0.8
299,476 - -0.0
299,476 - -2.3
299,476 - -0.7
299,476 - +0.1
299,476 - -1.2
299,476 - -0.5
299,476 - +0.2
299,476 - -1.4
299,641 + MPMX19_06113 0.19 +0.3
299,641 + MPMX19_06113 0.19 +0.9
299,641 + MPMX19_06113 0.19 +0.2
299,641 + MPMX19_06113 0.19 -0.0
299,641 + MPMX19_06113 0.19 +0.3
299,641 + MPMX19_06113 0.19 +0.2
299,641 + MPMX19_06113 0.19 +1.4
299,641 + MPMX19_06113 0.19 +0.1
299,641 + MPMX19_06113 0.19 +0.3
299,641 + MPMX19_06113 0.19 -0.3
299,641 + MPMX19_06113 0.19 +1.3
299,642 - MPMX19_06113 0.19 -0.9
299,642 - MPMX19_06113 0.19 -0.4
299,642 - MPMX19_06113 0.19 -0.7
299,642 - MPMX19_06113 0.19 +1.9
299,642 - MPMX19_06113 0.19 +0.4
299,642 - MPMX19_06113 0.19 -1.7
299,642 - MPMX19_06113 0.19 -0.3
299,642 - MPMX19_06113 0.19 -0.5
299,642 - MPMX19_06113 0.19 -0.8
299,642 - MPMX19_06113 0.19 +0.3
299,642 - MPMX19_06113 0.19 -0.8
299,642 - MPMX19_06113 0.19 -2.0
299,642 - MPMX19_06113 0.19 -1.4
299,642 - MPMX19_06113 0.19 +0.9
299,642 - MPMX19_06113 0.19 -0.8
299,647 + MPMX19_06113 0.19 -0.8
299,647 + MPMX19_06113 0.19 -1.9
299,647 + MPMX19_06113 0.19 -0.0
299,647 + MPMX19_06113 0.19 +0.8
299,647 + MPMX19_06113 0.19 -0.5
299,647 + MPMX19_06113 0.19 -0.3
299,647 + MPMX19_06113 0.19 -0.2
299,647 + MPMX19_06113 0.19 -0.8
299,647 + MPMX19_06113 0.19 +0.5
299,647 + MPMX19_06113 0.19 -0.9
299,647 + MPMX19_06113 0.19 -1.1
299,647 + MPMX19_06113 0.19 -0.8
299,647 + MPMX19_06113 0.19 -0.1
299,647 + MPMX19_06113 0.19 +0.2
299,647 + MPMX19_06113 0.19 -1.4
299,647 + MPMX19_06113 0.19 -0.6
299,647 + MPMX19_06113 0.19 -1.5
299,647 + MPMX19_06113 0.19 +0.5
299,647 + MPMX19_06113 0.19 +0.9
299,647 + MPMX19_06113 0.19 +1.8
299,647 + MPMX19_06113 0.19 -1.7
299,647 + MPMX19_06113 0.19 +1.0
299,647 + MPMX19_06113 0.19 +0.1
299,647 + MPMX19_06113 0.19 -1.2
299,647 + MPMX19_06113 0.19 -0.9
299,647 + MPMX19_06113 0.19 -0.6
299,647 + MPMX19_06113 0.19 +0.1
299,647 + MPMX19_06113 0.19 +0.5
299,647 + MPMX19_06113 0.19 -1.1
299,647 + MPMX19_06113 0.19 -0.8
299,647 + MPMX19_06113 0.19 +0.3
299,647 + MPMX19_06113 0.19 -1.2
299,647 + MPMX19_06113 0.19 +0.3
299,647 + MPMX19_06113 0.19 -1.4
299,647 + MPMX19_06113 0.19 -0.2
299,648 - MPMX19_06113 0.19 -0.1
299,648 - MPMX19_06113 0.19 -0.7
299,648 - MPMX19_06113 0.19 +0.2
299,648 - MPMX19_06113 0.19 +1.4
299,648 - MPMX19_06113 0.19 -0.4
299,648 - MPMX19_06113 0.19 -0.4
299,648 - MPMX19_06113 0.19 -0.8
299,648 - MPMX19_06113 0.19 -0.6
299,648 - MPMX19_06113 0.19 -1.8
299,648 - MPMX19_06113 0.19 -0.6
299,648 - MPMX19_06113 0.19 +0.0
299,648 - MPMX19_06113 0.19 +0.6
299,648 - MPMX19_06113 0.19 -0.4
299,648 - MPMX19_06113 0.19 -0.2
299,648 - MPMX19_06113 0.19 +1.6
299,648 - MPMX19_06113 0.19 +1.4
299,648 - MPMX19_06113 0.19 -0.5
299,648 - MPMX19_06113 0.19 -0.2
299,648 - MPMX19_06113 0.19 +2.1
299,648 - MPMX19_06113 0.19 -0.5
299,648 - MPMX19_06113 0.19 -1.1
299,648 - MPMX19_06113 0.19 +1.1
299,648 - MPMX19_06113 0.19 +0.1
299,648 - MPMX19_06113 0.19 -1.2
299,648 - MPMX19_06113 0.19 +1.2
299,648 - MPMX19_06113 0.19 +0.1
299,648 - MPMX19_06113 0.19 +0.8
299,827 + MPMX19_06113 0.43 -1.0
299,827 + MPMX19_06113 0.43 +0.2
299,827 + MPMX19_06113 0.43 +0.2
299,828 - MPMX19_06113 0.43 +0.8
299,828 - MPMX19_06113 0.43 -0.6
299,828 - MPMX19_06113 0.43 -1.3
300,058 + MPMX19_06113 0.73 +0.6
300,058 + MPMX19_06113 0.73 +0.2
300,058 + MPMX19_06113 0.73 -0.9
300,058 + MPMX19_06113 0.73 +0.9
300,058 + MPMX19_06113 0.73 -0.5
300,058 + MPMX19_06113 0.73 +1.1
300,059 - MPMX19_06113 0.73 +0.3
300,059 - MPMX19_06113 0.73 +0.7
300,061 + MPMX19_06113 0.73 -0.4
300,061 + MPMX19_06113 0.73 +0.5
300,061 + MPMX19_06113 0.73 -0.4
300,061 + MPMX19_06113 0.73 -1.8
300,061 + MPMX19_06113 0.73 -2.6
300,061 + MPMX19_06113 0.73 -0.3
300,061 + MPMX19_06113 0.73 +0.6
300,062 - MPMX19_06113 0.74 -1.8
300,062 - MPMX19_06113 0.74 -1.5
300,062 - MPMX19_06113 0.74 -0.9
300,064 + MPMX19_06113 0.74 -0.9
300,064 + MPMX19_06113 0.74 -0.5
300,064 + MPMX19_06113 0.74 +2.5
300,064 + MPMX19_06113 0.74 -0.5
300,064 + MPMX19_06113 0.74 +0.4
300,064 + MPMX19_06113 0.74 -0.4
300,065 - MPMX19_06113 0.74 +1.6
300,065 - MPMX19_06113 0.74 +0.6
300,065 - MPMX19_06113 0.74 +0.1
300,065 - MPMX19_06113 0.74 +0.1
300,065 - MPMX19_06113 0.74 -0.9
300,065 - MPMX19_06113 0.74 +0.4
300,065 - MPMX19_06113 0.74 +0.6
300,088 + MPMX19_06113 0.77 +1.0
300,088 + MPMX19_06113 0.77 -0.4
300,088 + MPMX19_06113 0.77 +0.1
300,088 + MPMX19_06113 0.77 +0.5
300,088 + MPMX19_06113 0.77 +0.5
300,089 - MPMX19_06113 0.77 -0.7
300,089 - MPMX19_06113 0.77 -1.5
300,089 - MPMX19_06113 0.77 -0.4
300,121 + MPMX19_06113 0.81 -1.2
300,121 + MPMX19_06113 0.81 -1.2
300,121 + MPMX19_06113 0.81 +0.1
300,121 + MPMX19_06113 0.81 +0.1
300,122 - MPMX19_06113 0.81 -1.2
300,293 + -2.0
300,293 + +0.6
300,293 + -1.0
300,294 - -0.9
300,294 - -1.5
300,294 - -0.1
300,296 + -1.0
300,296 + -2.7
300,296 + +1.2
300,296 + -0.3
300,296 + +0.1
300,296 + -0.2
300,296 + +0.0
300,296 + -1.9
300,296 + +0.7
300,296 + +1.1
300,297 - -0.8
300,297 - +1.1
300,297 - -0.3
300,297 - +2.5
300,297 - -1.8
300,297 - +0.2
300,300 + +0.1
300,300 + -2.9
300,300 + -0.7

Or see this region's nucleotide sequence