Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06111

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06110 and MPMX19_06111 are separated by 28 nucleotidesMPMX19_06111 and MPMX19_06112 overlap by 4 nucleotides MPMX19_06110: MPMX19_06110 - hypothetical protein, at 295,578 to 296,837 _06110 MPMX19_06111: MPMX19_06111 - Non-motile and phage-resistance protein, at 296,866 to 298,203 _06111 MPMX19_06112: MPMX19_06112 - hypothetical protein, at 298,200 to 299,336 _06112 Position (kb) 296 297 298 299Strain fitness (log2 ratio) -2 -1 0 1 2 3at 295.874 kb on + strand, within MPMX19_06110at 295.874 kb on + strand, within MPMX19_06110at 295.874 kb on + strand, within MPMX19_06110at 295.875 kb on - strand, within MPMX19_06110at 295.875 kb on - strand, within MPMX19_06110at 295.879 kb on + strand, within MPMX19_06110at 295.879 kb on + strand, within MPMX19_06110at 295.879 kb on + strand, within MPMX19_06110at 295.879 kb on + strand, within MPMX19_06110at 295.880 kb on - strand, within MPMX19_06110at 295.880 kb on - strand, within MPMX19_06110at 295.880 kb on - strand, within MPMX19_06110at 295.880 kb on - strand, within MPMX19_06110at 295.880 kb on - strand, within MPMX19_06110at 295.880 kb on - strand, within MPMX19_06110at 295.880 kb on - strand, within MPMX19_06110at 295.882 kb on + strand, within MPMX19_06110at 295.882 kb on + strand, within MPMX19_06110at 295.882 kb on + strand, within MPMX19_06110at 295.882 kb on + strand, within MPMX19_06110at 295.882 kb on + strand, within MPMX19_06110at 295.882 kb on + strand, within MPMX19_06110at 295.882 kb on + strand, within MPMX19_06110at 295.883 kb on - strand, within MPMX19_06110at 295.883 kb on - strand, within MPMX19_06110at 295.883 kb on - strand, within MPMX19_06110at 295.883 kb on - strand, within MPMX19_06110at 295.883 kb on - strand, within MPMX19_06110at 295.883 kb on - strand, within MPMX19_06110at 295.883 kb on - strand, within MPMX19_06110at 295.883 kb on - strand, within MPMX19_06110at 295.883 kb on - strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.939 kb on + strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 295.940 kb on - strand, within MPMX19_06110at 296.278 kb on + strand, within MPMX19_06110at 296.278 kb on + strand, within MPMX19_06110at 296.278 kb on + strand, within MPMX19_06110at 296.279 kb on - strand, within MPMX19_06110at 296.279 kb on - strand, within MPMX19_06110at 296.279 kb on - strand, within MPMX19_06110at 296.279 kb on - strand, within MPMX19_06110at 296.279 kb on - strand, within MPMX19_06110at 296.279 kb on - strand, within MPMX19_06110at 296.471 kb on - strand, within MPMX19_06110at 296.471 kb on - strand, within MPMX19_06110at 296.471 kb on - strand, within MPMX19_06110at 296.500 kb on + strand, within MPMX19_06110at 296.500 kb on + strand, within MPMX19_06110at 296.501 kb on - strand, within MPMX19_06110at 296.501 kb on - strand, within MPMX19_06110at 296.521 kb on + strand, within MPMX19_06110at 296.521 kb on + strand, within MPMX19_06110at 296.521 kb on + strand, within MPMX19_06110at 296.522 kb on - strand, within MPMX19_06110at 296.522 kb on - strand, within MPMX19_06110at 296.578 kb on + strand, within MPMX19_06110at 296.578 kb on + strand, within MPMX19_06110at 296.578 kb on + strand, within MPMX19_06110at 296.579 kb on - strand, within MPMX19_06110at 296.579 kb on - strand, within MPMX19_06110at 296.579 kb on - strand, within MPMX19_06110at 296.579 kb on - strand, within MPMX19_06110at 296.579 kb on - strand, within MPMX19_06110at 296.619 kb on + strand, within MPMX19_06110at 296.619 kb on + strand, within MPMX19_06110at 296.619 kb on + strand, within MPMX19_06110at 296.619 kb on + strand, within MPMX19_06110at 296.620 kb on - strand, within MPMX19_06110at 296.620 kb on - strand, within MPMX19_06110at 296.627 kb on + strand, within MPMX19_06110at 296.627 kb on + strand, within MPMX19_06110at 296.627 kb on + strand, within MPMX19_06110at 296.627 kb on + strand, within MPMX19_06110at 296.627 kb on + strand, within MPMX19_06110at 296.627 kb on + strand, within MPMX19_06110at 296.628 kb on - strand, within MPMX19_06110at 296.628 kb on - strand, within MPMX19_06110at 296.628 kb on - strand, within MPMX19_06110at 296.628 kb on - strand, within MPMX19_06110at 296.628 kb on - strand, within MPMX19_06110at 296.628 kb on - strand, within MPMX19_06110at 296.628 kb on - strand, within MPMX19_06110at 296.628 kb on - strand, within MPMX19_06110at 296.628 kb on - strand, within MPMX19_06110at 296.628 kb on - strand, within MPMX19_06110at 296.628 kb on - strand, within MPMX19_06110at 296.689 kb on + strand, within MPMX19_06110at 296.689 kb on + strand, within MPMX19_06110at 296.689 kb on + strand, within MPMX19_06110at 296.689 kb on + strand, within MPMX19_06110at 296.689 kb on + strand, within MPMX19_06110at 296.690 kb on - strand, within MPMX19_06110at 296.690 kb on - strand, within MPMX19_06110at 296.690 kb on - strand, within MPMX19_06110at 296.690 kb on - strand, within MPMX19_06110at 296.826 kb on + strandat 296.826 kb on + strandat 296.826 kb on + strandat 296.827 kb on - strandat 296.827 kb on - strandat 296.827 kb on - strandat 296.827 kb on - strandat 296.827 kb on - strandat 296.827 kb on - strandat 296.827 kb on - strandat 296.827 kb on - strandat 296.867 kb on + strandat 296.867 kb on + strandat 296.867 kb on + strandat 296.867 kb on + strandat 296.880 kb on - strandat 296.880 kb on - strandat 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.440 kb on + strand, within MPMX19_06111at 297.441 kb on - strand, within MPMX19_06111at 297.441 kb on - strand, within MPMX19_06111at 297.441 kb on - strand, within MPMX19_06111at 297.441 kb on - strand, within MPMX19_06111at 297.441 kb on - strand, within MPMX19_06111at 297.441 kb on - strand, within MPMX19_06111at 297.449 kb on + strand, within MPMX19_06111at 297.449 kb on + strand, within MPMX19_06111at 297.449 kb on + strand, within MPMX19_06111at 297.449 kb on + strand, within MPMX19_06111at 297.449 kb on + strand, within MPMX19_06111at 297.450 kb on - strand, within MPMX19_06111at 297.450 kb on - strand, within MPMX19_06111at 297.450 kb on - strand, within MPMX19_06111at 298.282 kb on + strandat 298.282 kb on + strandat 298.282 kb on + strandat 298.282 kb on + strandat 298.282 kb on + strandat 298.282 kb on + strandat 298.282 kb on + strandat 298.283 kb on - strandat 298.283 kb on - strandat 298.283 kb on - strandat 298.283 kb on - strandat 298.283 kb on - strandat 298.295 kb on + strandat 298.295 kb on + strandat 298.295 kb on + strandat 298.296 kb on - strandat 298.348 kb on + strand, within MPMX19_06112at 298.349 kb on - strand, within MPMX19_06112at 298.349 kb on - strand, within MPMX19_06112at 298.349 kb on - strand, within MPMX19_06112at 298.349 kb on - strand, within MPMX19_06112at 298.423 kb on + strand, within MPMX19_06112at 298.423 kb on + strand, within MPMX19_06112at 298.424 kb on - strand, within MPMX19_06112at 298.424 kb on - strand, within MPMX19_06112at 298.424 kb on - strand, within MPMX19_06112at 298.424 kb on - strand, within MPMX19_06112

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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295,874 + MPMX19_06110 0.23 -0.2
295,874 + MPMX19_06110 0.23 +1.1
295,874 + MPMX19_06110 0.23 +0.8
295,875 - MPMX19_06110 0.24 +0.9
295,875 - MPMX19_06110 0.24 +0.6
295,879 + MPMX19_06110 0.24 -1.5
295,879 + MPMX19_06110 0.24 +0.8
295,879 + MPMX19_06110 0.24 +0.6
295,879 + MPMX19_06110 0.24 +1.3
295,880 - MPMX19_06110 0.24 +0.1
295,880 - MPMX19_06110 0.24 -0.1
295,880 - MPMX19_06110 0.24 -0.7
295,880 - MPMX19_06110 0.24 -0.2
295,880 - MPMX19_06110 0.24 -1.7
295,880 - MPMX19_06110 0.24 -0.7
295,880 - MPMX19_06110 0.24 +1.1
295,882 + MPMX19_06110 0.24 -0.0
295,882 + MPMX19_06110 0.24 -0.9
295,882 + MPMX19_06110 0.24 -1.5
295,882 + MPMX19_06110 0.24 -0.3
295,882 + MPMX19_06110 0.24 -0.6
295,882 + MPMX19_06110 0.24 -0.2
295,882 + MPMX19_06110 0.24 +0.6
295,883 - MPMX19_06110 0.24 +1.8
295,883 - MPMX19_06110 0.24 -0.4
295,883 - MPMX19_06110 0.24 -0.7
295,883 - MPMX19_06110 0.24 -0.8
295,883 - MPMX19_06110 0.24 +0.4
295,883 - MPMX19_06110 0.24 +0.7
295,883 - MPMX19_06110 0.24 -0.8
295,883 - MPMX19_06110 0.24 -0.4
295,883 - MPMX19_06110 0.24 -0.0
295,939 + MPMX19_06110 0.29 +0.5
295,939 + MPMX19_06110 0.29 -0.3
295,939 + MPMX19_06110 0.29 +0.2
295,939 + MPMX19_06110 0.29 -0.9
295,939 + MPMX19_06110 0.29 -0.5
295,939 + MPMX19_06110 0.29 -0.3
295,939 + MPMX19_06110 0.29 +0.8
295,939 + MPMX19_06110 0.29 -0.4
295,939 + MPMX19_06110 0.29 +0.1
295,939 + MPMX19_06110 0.29 -0.1
295,939 + MPMX19_06110 0.29 +0.2
295,939 + MPMX19_06110 0.29 -0.8
295,939 + MPMX19_06110 0.29 +0.1
295,939 + MPMX19_06110 0.29 -0.1
295,940 - MPMX19_06110 0.29 -0.7
295,940 - MPMX19_06110 0.29 -0.9
295,940 - MPMX19_06110 0.29 +0.3
295,940 - MPMX19_06110 0.29 -1.6
295,940 - MPMX19_06110 0.29 +0.3
295,940 - MPMX19_06110 0.29 +0.6
295,940 - MPMX19_06110 0.29 +0.1
295,940 - MPMX19_06110 0.29 -1.2
295,940 - MPMX19_06110 0.29 -0.1
295,940 - MPMX19_06110 0.29 -0.5
295,940 - MPMX19_06110 0.29 -0.9
295,940 - MPMX19_06110 0.29 -0.8
295,940 - MPMX19_06110 0.29 +0.1
296,278 + MPMX19_06110 0.56 -1.2
296,278 + MPMX19_06110 0.56 -1.1
296,278 + MPMX19_06110 0.56 -1.4
296,279 - MPMX19_06110 0.56 +0.6
296,279 - MPMX19_06110 0.56 -0.6
296,279 - MPMX19_06110 0.56 -2.5
296,279 - MPMX19_06110 0.56 +0.9
296,279 - MPMX19_06110 0.56 -0.8
296,279 - MPMX19_06110 0.56 -0.7
296,471 - MPMX19_06110 0.71 -0.8
296,471 - MPMX19_06110 0.71 -1.4
296,471 - MPMX19_06110 0.71 +0.1
296,500 + MPMX19_06110 0.73 -0.4
296,500 + MPMX19_06110 0.73 +1.1
296,501 - MPMX19_06110 0.73 +2.0
296,501 - MPMX19_06110 0.73 -0.1
296,521 + MPMX19_06110 0.75 +0.4
296,521 + MPMX19_06110 0.75 +1.5
296,521 + MPMX19_06110 0.75 -1.2
296,522 - MPMX19_06110 0.75 -0.7
296,522 - MPMX19_06110 0.75 -0.5
296,578 + MPMX19_06110 0.79 -1.3
296,578 + MPMX19_06110 0.79 -0.6
296,578 + MPMX19_06110 0.79 +0.3
296,579 - MPMX19_06110 0.79 -0.1
296,579 - MPMX19_06110 0.79 -0.1
296,579 - MPMX19_06110 0.79 -1.3
296,579 - MPMX19_06110 0.79 +1.3
296,579 - MPMX19_06110 0.79 -0.1
296,619 + MPMX19_06110 0.83 -1.1
296,619 + MPMX19_06110 0.83 +0.4
296,619 + MPMX19_06110 0.83 +0.1
296,619 + MPMX19_06110 0.83 -0.7
296,620 - MPMX19_06110 0.83 +0.5
296,620 - MPMX19_06110 0.83 +0.2
296,627 + MPMX19_06110 0.83 -1.7
296,627 + MPMX19_06110 0.83 -1.2
296,627 + MPMX19_06110 0.83 -0.2
296,627 + MPMX19_06110 0.83 -0.2
296,627 + MPMX19_06110 0.83 -0.5
296,627 + MPMX19_06110 0.83 -0.1
296,628 - MPMX19_06110 0.83 +0.3
296,628 - MPMX19_06110 0.83 -1.0
296,628 - MPMX19_06110 0.83 -0.1
296,628 - MPMX19_06110 0.83 +0.5
296,628 - MPMX19_06110 0.83 -0.2
296,628 - MPMX19_06110 0.83 +2.9
296,628 - MPMX19_06110 0.83 +0.2
296,628 - MPMX19_06110 0.83 -1.8
296,628 - MPMX19_06110 0.83 -1.9
296,628 - MPMX19_06110 0.83 -0.4
296,628 - MPMX19_06110 0.83 -0.1
296,689 + MPMX19_06110 0.88 -0.5
296,689 + MPMX19_06110 0.88 +0.5
296,689 + MPMX19_06110 0.88 -0.8
296,689 + MPMX19_06110 0.88 -0.6
296,689 + MPMX19_06110 0.88 +0.2
296,690 - MPMX19_06110 0.88 -0.2
296,690 - MPMX19_06110 0.88 +0.6
296,690 - MPMX19_06110 0.88 +0.4
296,690 - MPMX19_06110 0.88 -0.9
296,826 + +1.8
296,826 + -0.4
296,826 + +0.4
296,827 - -0.4
296,827 - -0.3
296,827 - -0.9
296,827 - -0.4
296,827 - -0.2
296,827 - -1.2
296,827 - +0.6
296,827 - -0.7
296,867 + -0.7
296,867 + -1.1
296,867 + -1.2
296,867 + -0.2
296,880 - +0.6
296,880 - -1.2
297,440 + MPMX19_06111 0.43 -1.8
297,440 + MPMX19_06111 0.43 -1.2
297,440 + MPMX19_06111 0.43 -0.1
297,440 + MPMX19_06111 0.43 -1.0
297,440 + MPMX19_06111 0.43 -0.7
297,440 + MPMX19_06111 0.43 -1.4
297,440 + MPMX19_06111 0.43 +1.0
297,440 + MPMX19_06111 0.43 -1.3
297,440 + MPMX19_06111 0.43 -0.8
297,441 - MPMX19_06111 0.43 -0.8
297,441 - MPMX19_06111 0.43 -0.8
297,441 - MPMX19_06111 0.43 -0.4
297,441 - MPMX19_06111 0.43 +0.2
297,441 - MPMX19_06111 0.43 -0.2
297,441 - MPMX19_06111 0.43 -0.9
297,449 + MPMX19_06111 0.44 -1.5
297,449 + MPMX19_06111 0.44 -0.1
297,449 + MPMX19_06111 0.44 +0.8
297,449 + MPMX19_06111 0.44 +0.3
297,449 + MPMX19_06111 0.44 -1.7
297,450 - MPMX19_06111 0.44 +0.2
297,450 - MPMX19_06111 0.44 -1.9
297,450 - MPMX19_06111 0.44 -1.7
298,282 + -1.0
298,282 + -0.2
298,282 + -0.7
298,282 + -0.0
298,282 + -1.2
298,282 + +0.7
298,282 + +1.1
298,283 - -0.5
298,283 - -1.1
298,283 - +1.1
298,283 - -0.2
298,283 - +1.6
298,295 + +0.1
298,295 + +0.1
298,295 + +0.3
298,296 - +0.2
298,348 + MPMX19_06112 0.13 +0.2
298,349 - MPMX19_06112 0.13 -0.9
298,349 - MPMX19_06112 0.13 +0.9
298,349 - MPMX19_06112 0.13 +0.2
298,349 - MPMX19_06112 0.13 +0.4
298,423 + MPMX19_06112 0.20 -0.0
298,423 + MPMX19_06112 0.20 -0.7
298,424 - MPMX19_06112 0.20 +0.3
298,424 - MPMX19_06112 0.20 +0.4
298,424 - MPMX19_06112 0.20 +0.3
298,424 - MPMX19_06112 0.20 -1.4

Or see this region's nucleotide sequence