Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06041 and MPMX19_06042 overlap by 20 nucleotides MPMX19_06042 and MPMX19_06043 are separated by 395 nucleotides
MPMX19_06041: MPMX19_06041 - hypothetical protein, at 198,273 to 200,168
_06041
MPMX19_06042: MPMX19_06042 - hypothetical protein, at 200,149 to 200,811
_06042
MPMX19_06043: MPMX19_06043 - hypothetical protein, at 201,207 to 202,019
_06043
Position (kb) 200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 199.162 kb on + strand, within MPMX19_06041 at 199.162 kb on + strand, within MPMX19_06041 at 199.162 kb on + strand, within MPMX19_06041 at 199.163 kb on - strand, within MPMX19_06041 at 199.499 kb on + strand, within MPMX19_06041 at 199.609 kb on + strand, within MPMX19_06041 at 200.068 kb on + strand at 200.068 kb on + strand at 200.068 kb on + strand at 200.068 kb on + strand at 200.069 kb on - strand at 200.069 kb on - strand at 200.279 kb on + strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.760 kb on + strand at 200.760 kb on + strand at 200.760 kb on + strand at 200.760 kb on + strand at 200.760 kb on + strand at 200.760 kb on + strand at 200.761 kb on - strand at 200.885 kb on + strand at 200.886 kb on - strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.925 kb on + strand at 200.925 kb on + strand at 200.925 kb on + strand at 200.950 kb on + strand at 200.950 kb on + strand at 200.950 kb on + strand at 200.951 kb on - strand at 200.951 kb on - strand at 200.951 kb on - strand at 201.045 kb on - strand at 201.045 kb on - strand at 201.045 kb on - strand at 201.065 kb on - strand at 201.065 kb on - strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.195 kb on + strand at 201.195 kb on + strand at 201.195 kb on + strand at 201.195 kb on + strand at 201.195 kb on + strand at 201.195 kb on + strand at 201.196 kb on - strand at 201.196 kb on - strand at 201.196 kb on - strand at 201.196 kb on - strand at 201.196 kb on - strand at 201.348 kb on + strand, within MPMX19_06043 at 201.348 kb on + strand, within MPMX19_06043 at 201.348 kb on + strand, within MPMX19_06043 at 201.348 kb on + strand, within MPMX19_06043 at 201.348 kb on + strand, within MPMX19_06043 at 201.349 kb on - strand, within MPMX19_06043 at 201.349 kb on - strand, within MPMX19_06043 at 201.349 kb on - strand, within MPMX19_06043 at 201.349 kb on - strand, within MPMX19_06043 at 201.349 kb on - strand, within MPMX19_06043 at 201.349 kb on - strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.351 kb on + strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.352 kb on - strand, within MPMX19_06043 at 201.543 kb on + strand, within MPMX19_06043 at 201.651 kb on + strand, within MPMX19_06043 at 201.651 kb on + strand, within MPMX19_06043 at 201.651 kb on + strand, within MPMX19_06043 at 201.651 kb on + strand, within MPMX19_06043 at 201.651 kb on + strand, within MPMX19_06043 at 201.651 kb on + strand, within MPMX19_06043 at 201.651 kb on + strand, within MPMX19_06043 at 201.651 kb on + strand, within MPMX19_06043 at 201.652 kb on - strand, within MPMX19_06043 at 201.652 kb on - strand, within MPMX19_06043 at 201.652 kb on - strand, within MPMX19_06043 at 201.652 kb on - strand, within MPMX19_06043 at 201.652 kb on - strand, within MPMX19_06043 at 201.652 kb on - strand, within MPMX19_06043 at 201.652 kb on - strand, within MPMX19_06043 at 201.652 kb on - strand, within MPMX19_06043 at 201.652 kb on - strand, within MPMX19_06043 at 201.652 kb on - strand, within MPMX19_06043
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 199,162 + MPMX19_06041 0.47 +0.1 199,162 + MPMX19_06041 0.47 +0.8 199,162 + MPMX19_06041 0.47 -0.2 199,163 - MPMX19_06041 0.47 +0.2 199,499 + MPMX19_06041 0.65 -0.3 199,609 + MPMX19_06041 0.70 +0.8 200,068 + -0.9 200,068 + +0.3 200,068 + -1.7 200,068 + +0.3 200,069 - +0.7 200,069 - -1.2 200,279 + MPMX19_06042 0.20 -1.7 200,280 - MPMX19_06042 0.20 +1.3 200,280 - MPMX19_06042 0.20 +0.8 200,280 - MPMX19_06042 0.20 -0.2 200,280 - MPMX19_06042 0.20 +0.1 200,280 - MPMX19_06042 0.20 -0.9 200,280 - MPMX19_06042 0.20 -0.5 200,280 - MPMX19_06042 0.20 +0.4 200,280 - MPMX19_06042 0.20 +0.3 200,280 - MPMX19_06042 0.20 -0.2 200,280 - MPMX19_06042 0.20 -1.8 200,280 - MPMX19_06042 0.20 +0.2 200,318 + MPMX19_06042 0.25 +0.9 200,318 + MPMX19_06042 0.25 +0.7 200,318 + MPMX19_06042 0.25 +1.0 200,318 + MPMX19_06042 0.25 +1.7 200,318 + MPMX19_06042 0.25 +0.8 200,318 + MPMX19_06042 0.25 -0.3 200,318 + MPMX19_06042 0.25 +2.7 200,319 - MPMX19_06042 0.26 -0.7 200,319 - MPMX19_06042 0.26 -0.9 200,319 - MPMX19_06042 0.26 -0.5 200,319 - MPMX19_06042 0.26 -0.1 200,319 - MPMX19_06042 0.26 -0.1 200,319 - MPMX19_06042 0.26 +0.1 200,319 - MPMX19_06042 0.26 +1.0 200,760 + -0.2 200,760 + +0.7 200,760 + +1.0 200,760 + -1.0 200,760 + -0.7 200,760 + +0.2 200,761 - -1.2 200,885 + +0.6 200,886 - +0.7 200,920 + -0.7 200,920 + +0.8 200,920 + -0.3 200,920 + -1.5 200,920 + +0.1 200,920 + -1.7 200,920 + -1.0 200,920 + +1.3 200,920 + -1.8 200,920 + +1.4 200,920 + -0.9 200,920 + +0.1 200,920 + -1.3 200,921 - +0.1 200,921 - +0.7 200,921 - -0.9 200,921 - +0.5 200,921 - +1.1 200,921 - -0.5 200,921 - -0.3 200,921 - -1.7 200,921 - +1.0 200,921 - -1.3 200,921 - -1.2 200,921 - +0.8 200,921 - -0.3 200,921 - -1.2 200,921 - +0.5 200,921 - -0.0 200,921 - +0.5 200,921 - +0.3 200,925 + +1.5 200,925 + -2.3 200,925 + -0.1 200,950 + +0.7 200,950 + -0.3 200,950 + +0.4 200,951 - -0.3 200,951 - -0.8 200,951 - +1.7 201,045 - +0.3 201,045 - +0.4 201,045 - -2.3 201,065 - +0.3 201,065 - -0.3 201,157 + -1.5 201,157 + -0.2 201,157 + -0.3 201,157 + +0.9 201,157 + +0.1 201,157 + -0.1 201,157 + +0.8 201,157 + -1.4 201,157 + +1.1 201,157 + -0.0 201,157 + +1.2 201,157 + +1.2 201,157 + -0.0 201,157 + +0.8 201,157 + -1.9 201,157 + +0.6 201,157 + +0.2 201,157 + +1.5 201,157 + -1.5 201,157 + -0.6 201,157 + -0.2 201,158 - -0.7 201,158 - -0.3 201,158 - -0.8 201,158 - +0.2 201,158 - +1.2 201,158 - -1.7 201,158 - -0.9 201,158 - -1.6 201,158 - +1.0 201,158 - +0.1 201,158 - +0.4 201,158 - -0.8 201,158 - -0.5 201,158 - -0.7 201,158 - -0.3 201,158 - +0.4 201,158 - -0.3 201,158 - +0.0 201,158 - -1.1 201,158 - +0.8 201,158 - +0.9 201,158 - -0.5 201,159 + -0.8 201,159 + -0.2 201,159 + -0.3 201,159 + +0.9 201,159 + -0.4 201,159 + -0.9 201,159 + -0.5 201,159 + -0.0 201,159 + +1.7 201,159 + -0.3 201,159 + -0.3 201,159 + -1.6 201,159 + -0.1 201,159 + -0.6 201,159 + -0.3 201,160 - +0.2 201,160 - +0.8 201,160 - -0.1 201,160 - -0.7 201,160 - -0.0 201,160 - -0.2 201,160 - -0.8 201,160 - -1.3 201,160 - -0.5 201,160 - +1.4 201,160 - -2.4 201,160 - +0.3 201,160 - +0.1 201,160 - +0.2 201,160 - +0.5 201,195 + +0.2 201,195 + -0.4 201,195 + -0.5 201,195 + +0.0 201,195 + -1.1 201,195 + +0.5 201,196 - -0.6 201,196 - -1.3 201,196 - +1.1 201,196 - +1.0 201,196 - -0.7 201,348 + MPMX19_06043 0.17 -0.9 201,348 + MPMX19_06043 0.17 +1.5 201,348 + MPMX19_06043 0.17 +1.7 201,348 + MPMX19_06043 0.17 -0.3 201,348 + MPMX19_06043 0.17 -0.3 201,349 - MPMX19_06043 0.17 +0.4 201,349 - MPMX19_06043 0.17 -1.2 201,349 - MPMX19_06043 0.17 +1.1 201,349 - MPMX19_06043 0.17 -0.7 201,349 - MPMX19_06043 0.17 +0.7 201,349 - MPMX19_06043 0.17 -1.9 201,351 + MPMX19_06043 0.18 +0.1 201,351 + MPMX19_06043 0.18 -0.2 201,351 + MPMX19_06043 0.18 +0.2 201,351 + MPMX19_06043 0.18 -1.3 201,351 + MPMX19_06043 0.18 -0.1 201,351 + MPMX19_06043 0.18 +0.2 201,351 + MPMX19_06043 0.18 +0.4 201,351 + MPMX19_06043 0.18 -0.3 201,351 + MPMX19_06043 0.18 -0.7 201,351 + MPMX19_06043 0.18 -0.4 201,351 + MPMX19_06043 0.18 -0.0 201,351 + MPMX19_06043 0.18 +0.5 201,351 + MPMX19_06043 0.18 +0.3 201,351 + MPMX19_06043 0.18 +0.4 201,351 + MPMX19_06043 0.18 +0.4 201,351 + MPMX19_06043 0.18 +0.8 201,351 + MPMX19_06043 0.18 +0.1 201,351 + MPMX19_06043 0.18 +0.2 201,351 + MPMX19_06043 0.18 -1.2 201,351 + MPMX19_06043 0.18 +0.1 201,351 + MPMX19_06043 0.18 +0.1 201,351 + MPMX19_06043 0.18 -0.4 201,351 + MPMX19_06043 0.18 -0.5 201,351 + MPMX19_06043 0.18 -1.0 201,351 + MPMX19_06043 0.18 -2.2 201,351 + MPMX19_06043 0.18 -0.6 201,351 + MPMX19_06043 0.18 -0.3 201,351 + MPMX19_06043 0.18 -0.3 201,351 + MPMX19_06043 0.18 -0.9 201,351 + MPMX19_06043 0.18 -0.8 201,351 + MPMX19_06043 0.18 -1.3 201,352 - MPMX19_06043 0.18 -0.3 201,352 - MPMX19_06043 0.18 -0.8 201,352 - MPMX19_06043 0.18 -0.8 201,352 - MPMX19_06043 0.18 -0.7 201,352 - MPMX19_06043 0.18 +0.3 201,352 - MPMX19_06043 0.18 -0.2 201,352 - MPMX19_06043 0.18 -1.8 201,352 - MPMX19_06043 0.18 -0.7 201,352 - MPMX19_06043 0.18 +0.3 201,352 - MPMX19_06043 0.18 +0.1 201,352 - MPMX19_06043 0.18 +0.4 201,352 - MPMX19_06043 0.18 +1.0 201,352 - MPMX19_06043 0.18 -0.7 201,352 - MPMX19_06043 0.18 -0.1 201,352 - MPMX19_06043 0.18 -0.3 201,352 - MPMX19_06043 0.18 -1.7 201,352 - MPMX19_06043 0.18 +0.1 201,352 - MPMX19_06043 0.18 +0.2 201,352 - MPMX19_06043 0.18 +0.7 201,352 - MPMX19_06043 0.18 +0.7 201,352 - MPMX19_06043 0.18 -0.7 201,352 - MPMX19_06043 0.18 -1.2 201,352 - MPMX19_06043 0.18 -1.7 201,352 - MPMX19_06043 0.18 +0.4 201,352 - MPMX19_06043 0.18 -1.5 201,352 - MPMX19_06043 0.18 -0.2 201,352 - MPMX19_06043 0.18 -0.3 201,543 + MPMX19_06043 0.41 +0.0 201,651 + MPMX19_06043 0.55 -1.5 201,651 + MPMX19_06043 0.55 -1.3 201,651 + MPMX19_06043 0.55 -1.0 201,651 + MPMX19_06043 0.55 -1.9 201,651 + MPMX19_06043 0.55 -0.3 201,651 + MPMX19_06043 0.55 -1.6 201,651 + MPMX19_06043 0.55 -0.8 201,651 + MPMX19_06043 0.55 +1.7 201,652 - MPMX19_06043 0.55 -1.5 201,652 - MPMX19_06043 0.55 -0.3 201,652 - MPMX19_06043 0.55 -0.4 201,652 - MPMX19_06043 0.55 +1.5 201,652 - MPMX19_06043 0.55 +0.1 201,652 - MPMX19_06043 0.55 +1.4 201,652 - MPMX19_06043 0.55 -0.7 201,652 - MPMX19_06043 0.55 -0.4 201,652 - MPMX19_06043 0.55 +0.8 201,652 - MPMX19_06043 0.55 -0.3
Or see this region's nucleotide sequence