Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06040

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06039 and MPMX19_06040 are separated by 48 nucleotidesMPMX19_06040 and MPMX19_06041 overlap by 4 nucleotides MPMX19_06039: MPMX19_06039 - Putative multidrug export ATP-binding/permease protein, at 196,018 to 197,826 _06039 MPMX19_06040: MPMX19_06040 - Phyllosphere-induced regulator PhyR, at 197,875 to 198,276 _06040 MPMX19_06041: MPMX19_06041 - hypothetical protein, at 198,273 to 200,168 _06041 Position (kb) 197 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.903 kb on + strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.904 kb on - strand, within MPMX19_06039at 196.918 kb on + strand, within MPMX19_06039at 196.918 kb on + strand, within MPMX19_06039at 196.918 kb on + strand, within MPMX19_06039at 196.919 kb on - strand, within MPMX19_06039at 196.919 kb on - strand, within MPMX19_06039at 196.919 kb on - strand, within MPMX19_06039at 196.919 kb on - strand, within MPMX19_06039at 196.919 kb on - strand, within MPMX19_06039at 196.919 kb on - strand, within MPMX19_06039at 196.936 kb on + strand, within MPMX19_06039at 196.936 kb on + strand, within MPMX19_06039at 196.936 kb on + strand, within MPMX19_06039at 196.936 kb on + strand, within MPMX19_06039at 196.936 kb on + strand, within MPMX19_06039at 196.937 kb on - strand, within MPMX19_06039at 196.937 kb on - strand, within MPMX19_06039at 197.104 kb on + strand, within MPMX19_06039at 197.104 kb on + strand, within MPMX19_06039at 197.104 kb on + strand, within MPMX19_06039at 197.105 kb on - strand, within MPMX19_06039at 197.128 kb on + strand, within MPMX19_06039at 197.128 kb on + strand, within MPMX19_06039at 197.129 kb on - strand, within MPMX19_06039at 197.129 kb on - strand, within MPMX19_06039at 197.230 kb on + strand, within MPMX19_06039at 197.230 kb on + strand, within MPMX19_06039at 197.230 kb on + strand, within MPMX19_06039at 197.230 kb on + strand, within MPMX19_06039at 197.230 kb on + strand, within MPMX19_06039at 197.230 kb on + strand, within MPMX19_06039at 197.230 kb on + strand, within MPMX19_06039at 197.231 kb on - strand, within MPMX19_06039at 197.231 kb on - strand, within MPMX19_06039at 197.231 kb on - strand, within MPMX19_06039at 197.231 kb on - strand, within MPMX19_06039at 197.231 kb on - strand, within MPMX19_06039at 197.231 kb on - strand, within MPMX19_06039at 197.231 kb on - strand, within MPMX19_06039at 197.231 kb on - strand, within MPMX19_06039at 197.231 kb on - strand, within MPMX19_06039at 197.368 kb on + strand, within MPMX19_06039at 197.368 kb on + strand, within MPMX19_06039at 197.369 kb on - strand, within MPMX19_06039at 197.369 kb on - strand, within MPMX19_06039at 197.458 kb on + strand, within MPMX19_06039at 197.468 kb on + strand, within MPMX19_06039at 197.767 kb on + strandat 197.824 kb on + strandat 197.824 kb on + strandat 197.824 kb on + strandat 197.824 kb on + strandat 197.824 kb on + strandat 197.824 kb on + strandat 197.824 kb on + strandat 197.824 kb on + strandat 197.825 kb on - strandat 197.825 kb on - strandat 197.825 kb on - strandat 197.825 kb on - strandat 197.825 kb on - strandat 197.825 kb on - strandat 197.825 kb on - strandat 197.844 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.865 kb on + strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 197.866 kb on - strandat 198.103 kb on - strand, within MPMX19_06040at 198.118 kb on + strand, within MPMX19_06040at 198.118 kb on + strand, within MPMX19_06040at 198.118 kb on + strand, within MPMX19_06040at 198.118 kb on + strand, within MPMX19_06040at 198.118 kb on + strand, within MPMX19_06040at 198.118 kb on + strand, within MPMX19_06040at 198.118 kb on + strand, within MPMX19_06040at 198.118 kb on + strand, within MPMX19_06040at 198.118 kb on + strand, within MPMX19_06040at 198.118 kb on + strand, within MPMX19_06040at 198.119 kb on - strand, within MPMX19_06040at 198.119 kb on - strand, within MPMX19_06040at 198.119 kb on - strand, within MPMX19_06040at 198.119 kb on - strand, within MPMX19_06040at 198.119 kb on - strand, within MPMX19_06040at 198.119 kb on - strand, within MPMX19_06040at 198.119 kb on - strand, within MPMX19_06040at 198.119 kb on - strand, within MPMX19_06040at 198.119 kb on - strand, within MPMX19_06040at 198.119 kb on - strand, within MPMX19_06040at 198.119 kb on - strand, within MPMX19_06040at 198.221 kb on + strand, within MPMX19_06040at 198.221 kb on + strand, within MPMX19_06040at 198.221 kb on + strand, within MPMX19_06040at 198.221 kb on + strand, within MPMX19_06040at 198.221 kb on + strand, within MPMX19_06040at 198.221 kb on + strand, within MPMX19_06040at 198.221 kb on + strand, within MPMX19_06040at 198.221 kb on + strand, within MPMX19_06040at 198.222 kb on - strand, within MPMX19_06040at 198.222 kb on - strand, within MPMX19_06040at 198.222 kb on - strand, within MPMX19_06040at 198.706 kb on + strand, within MPMX19_06041at 198.706 kb on + strand, within MPMX19_06041at 198.707 kb on - strand, within MPMX19_06041at 198.707 kb on - strand, within MPMX19_06041at 198.746 kb on - strand, within MPMX19_06041at 198.746 kb on - strand, within MPMX19_06041at 198.746 kb on - strand, within MPMX19_06041at 198.746 kb on - strand, within MPMX19_06041at 198.858 kb on + strand, within MPMX19_06041at 198.859 kb on - strand, within MPMX19_06041at 199.054 kb on + strand, within MPMX19_06041at 199.054 kb on + strand, within MPMX19_06041at 199.054 kb on + strand, within MPMX19_06041at 199.054 kb on + strand, within MPMX19_06041at 199.054 kb on + strand, within MPMX19_06041at 199.054 kb on + strand, within MPMX19_06041at 199.054 kb on + strand, within MPMX19_06041at 199.054 kb on + strand, within MPMX19_06041at 199.055 kb on - strand, within MPMX19_06041at 199.055 kb on - strand, within MPMX19_06041at 199.055 kb on - strand, within MPMX19_06041at 199.055 kb on - strand, within MPMX19_06041at 199.055 kb on - strand, within MPMX19_06041at 199.055 kb on - strand, within MPMX19_06041at 199.162 kb on + strand, within MPMX19_06041at 199.162 kb on + strand, within MPMX19_06041at 199.162 kb on + strand, within MPMX19_06041at 199.163 kb on - strand, within MPMX19_06041

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
196,903 + MPMX19_06039 0.49 +0.1
196,903 + MPMX19_06039 0.49 +1.2
196,903 + MPMX19_06039 0.49 -0.8
196,903 + MPMX19_06039 0.49 -0.3
196,903 + MPMX19_06039 0.49 +0.7
196,903 + MPMX19_06039 0.49 +0.1
196,903 + MPMX19_06039 0.49 -0.3
196,903 + MPMX19_06039 0.49 +0.1
196,903 + MPMX19_06039 0.49 -0.2
196,903 + MPMX19_06039 0.49 -0.3
196,903 + MPMX19_06039 0.49 -0.5
196,903 + MPMX19_06039 0.49 -0.3
196,903 + MPMX19_06039 0.49 -1.0
196,903 + MPMX19_06039 0.49 -1.0
196,904 - MPMX19_06039 0.49 -0.7
196,904 - MPMX19_06039 0.49 +0.4
196,904 - MPMX19_06039 0.49 -1.6
196,904 - MPMX19_06039 0.49 -2.1
196,904 - MPMX19_06039 0.49 +0.1
196,904 - MPMX19_06039 0.49 -1.0
196,904 - MPMX19_06039 0.49 -0.7
196,904 - MPMX19_06039 0.49 -1.7
196,904 - MPMX19_06039 0.49 -0.1
196,904 - MPMX19_06039 0.49 +0.7
196,904 - MPMX19_06039 0.49 -0.3
196,904 - MPMX19_06039 0.49 -0.5
196,904 - MPMX19_06039 0.49 +1.4
196,904 - MPMX19_06039 0.49 -0.1
196,904 - MPMX19_06039 0.49 +0.4
196,918 + MPMX19_06039 0.50 +0.6
196,918 + MPMX19_06039 0.50 +0.2
196,918 + MPMX19_06039 0.50 +0.3
196,919 - MPMX19_06039 0.50 -1.8
196,919 - MPMX19_06039 0.50 +2.0
196,919 - MPMX19_06039 0.50 -0.2
196,919 - MPMX19_06039 0.50 -0.1
196,919 - MPMX19_06039 0.50 +0.7
196,919 - MPMX19_06039 0.50 -0.7
196,936 + MPMX19_06039 0.51 -0.7
196,936 + MPMX19_06039 0.51 +0.4
196,936 + MPMX19_06039 0.51 -0.1
196,936 + MPMX19_06039 0.51 -0.0
196,936 + MPMX19_06039 0.51 +0.1
196,937 - MPMX19_06039 0.51 +0.2
196,937 - MPMX19_06039 0.51 -0.3
197,104 + MPMX19_06039 0.60 -1.7
197,104 + MPMX19_06039 0.60 +0.2
197,104 + MPMX19_06039 0.60 +0.2
197,105 - MPMX19_06039 0.60 -0.2
197,128 + MPMX19_06039 0.61 -1.7
197,128 + MPMX19_06039 0.61 -0.0
197,129 - MPMX19_06039 0.61 +0.1
197,129 - MPMX19_06039 0.61 -1.5
197,230 + MPMX19_06039 0.67 -1.8
197,230 + MPMX19_06039 0.67 -0.6
197,230 + MPMX19_06039 0.67 +0.2
197,230 + MPMX19_06039 0.67 -0.7
197,230 + MPMX19_06039 0.67 -0.4
197,230 + MPMX19_06039 0.67 -1.7
197,230 + MPMX19_06039 0.67 +0.1
197,231 - MPMX19_06039 0.67 +0.9
197,231 - MPMX19_06039 0.67 -0.1
197,231 - MPMX19_06039 0.67 -0.0
197,231 - MPMX19_06039 0.67 -0.1
197,231 - MPMX19_06039 0.67 -0.8
197,231 - MPMX19_06039 0.67 +1.7
197,231 - MPMX19_06039 0.67 +0.6
197,231 - MPMX19_06039 0.67 -1.3
197,231 - MPMX19_06039 0.67 +0.3
197,368 + MPMX19_06039 0.75 +0.3
197,368 + MPMX19_06039 0.75 -0.1
197,369 - MPMX19_06039 0.75 -0.3
197,369 - MPMX19_06039 0.75 -0.6
197,458 + MPMX19_06039 0.80 +0.1
197,468 + MPMX19_06039 0.80 -0.1
197,767 + +0.8
197,824 + -0.7
197,824 + -1.1
197,824 + -0.1
197,824 + -0.7
197,824 + +0.6
197,824 + -0.4
197,824 + -0.5
197,824 + +0.1
197,825 - -2.9
197,825 - -1.1
197,825 - +0.1
197,825 - -1.1
197,825 - -0.4
197,825 - -0.7
197,825 - -0.1
197,844 + +0.2
197,865 + +0.2
197,865 + -1.7
197,865 + +0.7
197,865 + -1.3
197,865 + +0.2
197,865 + -0.5
197,865 + +1.5
197,865 + -1.6
197,865 + -0.1
197,865 + -0.1
197,865 + -0.2
197,865 + -0.7
197,865 + -0.7
197,865 + -0.7
197,865 + +0.5
197,865 + -0.3
197,865 + +0.8
197,865 + +0.3
197,865 + +0.7
197,865 + -0.6
197,865 + -0.1
197,865 + -0.5
197,865 + -0.2
197,865 + +0.3
197,865 + +1.2
197,866 - -0.3
197,866 - +0.2
197,866 - +0.3
197,866 - +0.3
197,866 - -1.0
197,866 - -0.3
197,866 - -1.0
197,866 - -0.2
197,866 - +0.1
197,866 - +0.3
197,866 - -0.1
197,866 - -0.1
197,866 - +0.7
197,866 - -1.0
197,866 - +0.1
197,866 - -1.3
197,866 - -0.3
197,866 - -0.4
197,866 - +0.9
197,866 - -1.4
197,866 - +0.0
198,103 - MPMX19_06040 0.57 +0.1
198,118 + MPMX19_06040 0.60 +1.0
198,118 + MPMX19_06040 0.60 -0.8
198,118 + MPMX19_06040 0.60 +0.3
198,118 + MPMX19_06040 0.60 -0.6
198,118 + MPMX19_06040 0.60 +0.3
198,118 + MPMX19_06040 0.60 +0.3
198,118 + MPMX19_06040 0.60 +0.2
198,118 + MPMX19_06040 0.60 +0.7
198,118 + MPMX19_06040 0.60 -1.1
198,118 + MPMX19_06040 0.60 -0.6
198,119 - MPMX19_06040 0.61 -0.3
198,119 - MPMX19_06040 0.61 +0.3
198,119 - MPMX19_06040 0.61 -0.1
198,119 - MPMX19_06040 0.61 -2.1
198,119 - MPMX19_06040 0.61 +1.3
198,119 - MPMX19_06040 0.61 +0.3
198,119 - MPMX19_06040 0.61 +0.4
198,119 - MPMX19_06040 0.61 +0.3
198,119 - MPMX19_06040 0.61 -1.1
198,119 - MPMX19_06040 0.61 +0.1
198,119 - MPMX19_06040 0.61 -0.3
198,221 + MPMX19_06040 0.86 +0.8
198,221 + MPMX19_06040 0.86 -0.1
198,221 + MPMX19_06040 0.86 +1.1
198,221 + MPMX19_06040 0.86 +0.4
198,221 + MPMX19_06040 0.86 +0.2
198,221 + MPMX19_06040 0.86 -0.7
198,221 + MPMX19_06040 0.86 -0.9
198,221 + MPMX19_06040 0.86 -0.1
198,222 - MPMX19_06040 0.86 -1.1
198,222 - MPMX19_06040 0.86 -0.6
198,222 - MPMX19_06040 0.86 -0.5
198,706 + MPMX19_06041 0.23 +0.1
198,706 + MPMX19_06041 0.23 -0.5
198,707 - MPMX19_06041 0.23 -1.5
198,707 - MPMX19_06041 0.23 +0.1
198,746 - MPMX19_06041 0.25 -0.4
198,746 - MPMX19_06041 0.25 -0.9
198,746 - MPMX19_06041 0.25 -1.0
198,746 - MPMX19_06041 0.25 -0.9
198,858 + MPMX19_06041 0.31 -0.4
198,859 - MPMX19_06041 0.31 -0.1
199,054 + MPMX19_06041 0.41 +1.3
199,054 + MPMX19_06041 0.41 -1.7
199,054 + MPMX19_06041 0.41 +0.7
199,054 + MPMX19_06041 0.41 -0.3
199,054 + MPMX19_06041 0.41 -1.1
199,054 + MPMX19_06041 0.41 -0.5
199,054 + MPMX19_06041 0.41 -0.5
199,054 + MPMX19_06041 0.41 +0.1
199,055 - MPMX19_06041 0.41 -0.6
199,055 - MPMX19_06041 0.41 +0.8
199,055 - MPMX19_06041 0.41 +0.2
199,055 - MPMX19_06041 0.41 -0.7
199,055 - MPMX19_06041 0.41 +1.0
199,055 - MPMX19_06041 0.41 -0.7
199,162 + MPMX19_06041 0.47 +0.1
199,162 + MPMX19_06041 0.47 +0.8
199,162 + MPMX19_06041 0.47 -0.2
199,163 - MPMX19_06041 0.47 +0.2

Or see this region's nucleotide sequence