Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06003 and MPMX19_06004 overlap by 4 nucleotides MPMX19_06004 and MPMX19_06005 are separated by 3 nucleotides MPMX19_06005 and MPMX19_06006 are separated by 1 nucleotides
MPMX19_06003: MPMX19_06003 - hypothetical protein, at 157,471 to 158,961
_06003
MPMX19_06004: MPMX19_06004 - Lipopolysaccharide export system ATP-binding protein LptB, at 158,958 to 159,866
_06004
MPMX19_06005: MPMX19_06005 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 159,870 to 160,580
_06005
MPMX19_06006: MPMX19_06006 - hypothetical protein, at 160,582 to 160,935
_06006
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 159.150 kb on + strand, within MPMX19_06004 at 159.150 kb on + strand, within MPMX19_06004 at 159.150 kb on + strand, within MPMX19_06004 at 159.150 kb on + strand, within MPMX19_06004 at 159.150 kb on + strand, within MPMX19_06004 at 159.150 kb on + strand, within MPMX19_06004 at 159.481 kb on - strand, within MPMX19_06004 at 160.560 kb on + strand at 160.560 kb on + strand at 160.560 kb on + strand at 160.712 kb on - strand, within MPMX19_06006 at 160.712 kb on - strand, within MPMX19_06006 at 160.712 kb on - strand, within MPMX19_06006 at 160.712 kb on - strand, within MPMX19_06006 at 160.712 kb on - strand, within MPMX19_06006
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 159,150 + MPMX19_06004 0.21 -1.0 159,150 + MPMX19_06004 0.21 -1.3 159,150 + MPMX19_06004 0.21 -0.1 159,150 + MPMX19_06004 0.21 -0.3 159,150 + MPMX19_06004 0.21 -0.8 159,150 + MPMX19_06004 0.21 +1.3 159,481 - MPMX19_06004 0.58 -1.4 160,560 + -0.3 160,560 + -0.5 160,560 + +0.4 160,712 - MPMX19_06006 0.37 -1.8 160,712 - MPMX19_06006 0.37 -1.1 160,712 - MPMX19_06006 0.37 +1.2 160,712 - MPMX19_06006 0.37 -0.7 160,712 - MPMX19_06006 0.37 -1.5
Or see this region's nucleotide sequence