Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06000 and MPMX19_06001 are separated by 265 nucleotides MPMX19_06001 and MPMX19_06002 are separated by 397 nucleotides
MPMX19_06000: MPMX19_06000 - Fructokinase, at 154,146 to 155,135
_06000
MPMX19_06001: MPMX19_06001 - hypothetical protein, at 155,401 to 156,162
_06001
MPMX19_06002: MPMX19_06002 - High-affinity branched-chain amino acid transport system permease protein LivH, at 156,560 to 157,465
_06002
Position (kb) 155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 154.549 kb on + strand, within MPMX19_06000 at 154.549 kb on + strand, within MPMX19_06000 at 154.549 kb on + strand, within MPMX19_06000 at 154.549 kb on + strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.969 kb on + strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 155.087 kb on - strand at 155.173 kb on - strand at 155.173 kb on - strand at 155.379 kb on + strand at 155.379 kb on + strand at 155.581 kb on + strand, within MPMX19_06001 at 155.581 kb on + strand, within MPMX19_06001 at 155.581 kb on + strand, within MPMX19_06001 at 155.581 kb on + strand, within MPMX19_06001 at 155.581 kb on + strand, within MPMX19_06001 at 155.582 kb on - strand, within MPMX19_06001 at 155.582 kb on - strand, within MPMX19_06001 at 155.582 kb on - strand, within MPMX19_06001 at 155.758 kb on + strand, within MPMX19_06001 at 155.758 kb on + strand, within MPMX19_06001 at 155.758 kb on + strand, within MPMX19_06001 at 155.758 kb on + strand, within MPMX19_06001 at 155.759 kb on - strand, within MPMX19_06001 at 155.759 kb on - strand, within MPMX19_06001 at 155.866 kb on + strand, within MPMX19_06001 at 155.867 kb on - strand, within MPMX19_06001 at 155.867 kb on - strand, within MPMX19_06001 at 156.301 kb on + strand at 156.301 kb on + strand at 156.301 kb on + strand at 156.302 kb on - strand at 156.304 kb on + strand at 156.397 kb on + strand at 156.397 kb on + strand at 156.398 kb on - strand at 156.398 kb on - strand at 156.398 kb on - strand at 156.398 kb on - strand at 156.398 kb on - strand at 156.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 154,549 + MPMX19_06000 0.41 -0.7 154,549 + MPMX19_06000 0.41 -0.5 154,549 + MPMX19_06000 0.41 -0.9 154,549 + MPMX19_06000 0.41 -0.5 154,550 - MPMX19_06000 0.41 -1.3 154,550 - MPMX19_06000 0.41 -2.2 154,550 - MPMX19_06000 0.41 -0.9 154,550 - MPMX19_06000 0.41 +0.2 154,550 - MPMX19_06000 0.41 +0.3 154,550 - MPMX19_06000 0.41 -0.5 154,550 - MPMX19_06000 0.41 +0.8 154,550 - MPMX19_06000 0.41 -1.5 154,550 - MPMX19_06000 0.41 +0.1 154,969 + MPMX19_06000 0.83 -0.1 154,970 - MPMX19_06000 0.83 +0.3 154,970 - MPMX19_06000 0.83 -0.8 154,970 - MPMX19_06000 0.83 +0.9 154,970 - MPMX19_06000 0.83 +0.2 154,970 - MPMX19_06000 0.83 -0.1 154,970 - MPMX19_06000 0.83 -0.6 154,970 - MPMX19_06000 0.83 +0.7 154,970 - MPMX19_06000 0.83 -0.2 155,087 - -0.9 155,173 - -0.2 155,173 - -0.4 155,379 + -0.7 155,379 + +0.7 155,581 + MPMX19_06001 0.24 -2.4 155,581 + MPMX19_06001 0.24 -0.7 155,581 + MPMX19_06001 0.24 -2.4 155,581 + MPMX19_06001 0.24 -1.8 155,581 + MPMX19_06001 0.24 +0.3 155,582 - MPMX19_06001 0.24 +0.1 155,582 - MPMX19_06001 0.24 +1.0 155,582 - MPMX19_06001 0.24 +0.4 155,758 + MPMX19_06001 0.47 -2.9 155,758 + MPMX19_06001 0.47 -0.6 155,758 + MPMX19_06001 0.47 -0.0 155,758 + MPMX19_06001 0.47 -0.7 155,759 - MPMX19_06001 0.47 -0.7 155,759 - MPMX19_06001 0.47 -2.4 155,866 + MPMX19_06001 0.61 -1.5 155,867 - MPMX19_06001 0.61 +0.2 155,867 - MPMX19_06001 0.61 -0.9 156,301 + +0.2 156,301 + -0.0 156,301 + +0.3 156,302 - +0.7 156,304 + -0.3 156,397 + -3.0 156,397 + -0.4 156,398 - +0.4 156,398 - +0.2 156,398 - -0.1 156,398 - -0.9 156,398 - -0.6 156,560 - +0.2
Or see this region's nucleotide sequence