Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05982

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05981 and MPMX19_05982 are separated by 200 nucleotidesMPMX19_05982 and MPMX19_05983 are separated by 141 nucleotides MPMX19_05981: MPMX19_05981 - hypothetical protein, at 135,843 to 137,051 _05981 MPMX19_05982: MPMX19_05982 - hypothetical protein, at 137,252 to 138,097 _05982 MPMX19_05983: MPMX19_05983 - Methylamine utilization protein MauG, at 138,239 to 139,399 _05983 Position (kb) 137 138 139Strain fitness (log2 ratio) -2 -1 0 1 2 3at 136.360 kb on + strand, within MPMX19_05981at 136.360 kb on + strand, within MPMX19_05981at 136.360 kb on + strand, within MPMX19_05981at 136.360 kb on + strand, within MPMX19_05981at 136.360 kb on + strand, within MPMX19_05981at 136.360 kb on + strand, within MPMX19_05981at 136.360 kb on + strand, within MPMX19_05981at 136.360 kb on + strand, within MPMX19_05981at 136.360 kb on + strand, within MPMX19_05981at 136.360 kb on + strand, within MPMX19_05981at 136.361 kb on - strand, within MPMX19_05981at 136.361 kb on - strand, within MPMX19_05981at 136.361 kb on - strand, within MPMX19_05981at 136.361 kb on - strand, within MPMX19_05981at 136.361 kb on - strand, within MPMX19_05981at 136.361 kb on - strand, within MPMX19_05981at 136.361 kb on - strand, within MPMX19_05981at 136.361 kb on - strand, within MPMX19_05981at 136.361 kb on - strand, within MPMX19_05981at 136.361 kb on - strand, within MPMX19_05981at 136.456 kb on + strand, within MPMX19_05981at 136.456 kb on + strand, within MPMX19_05981at 136.456 kb on + strand, within MPMX19_05981at 136.456 kb on + strand, within MPMX19_05981at 136.457 kb on - strand, within MPMX19_05981at 136.471 kb on + strand, within MPMX19_05981at 136.471 kb on + strand, within MPMX19_05981at 136.471 kb on + strand, within MPMX19_05981at 136.471 kb on + strand, within MPMX19_05981at 136.471 kb on + strand, within MPMX19_05981at 136.472 kb on - strand, within MPMX19_05981at 136.472 kb on - strand, within MPMX19_05981at 136.472 kb on - strand, within MPMX19_05981at 136.472 kb on - strand, within MPMX19_05981at 136.492 kb on + strand, within MPMX19_05981at 136.492 kb on + strand, within MPMX19_05981at 136.493 kb on - strand, within MPMX19_05981at 136.493 kb on - strand, within MPMX19_05981at 136.493 kb on - strand, within MPMX19_05981at 136.493 kb on - strand, within MPMX19_05981at 136.493 kb on - strand, within MPMX19_05981at 136.651 kb on + strand, within MPMX19_05981at 136.651 kb on + strand, within MPMX19_05981at 136.651 kb on + strand, within MPMX19_05981at 136.652 kb on - strand, within MPMX19_05981at 136.652 kb on - strand, within MPMX19_05981at 136.652 kb on - strand, within MPMX19_05981at 136.652 kb on - strand, within MPMX19_05981at 136.652 kb on - strand, within MPMX19_05981at 136.660 kb on + strand, within MPMX19_05981at 136.660 kb on + strand, within MPMX19_05981at 136.661 kb on - strand, within MPMX19_05981at 136.669 kb on + strand, within MPMX19_05981at 136.669 kb on + strand, within MPMX19_05981at 136.669 kb on + strand, within MPMX19_05981at 136.669 kb on + strand, within MPMX19_05981at 136.670 kb on - strand, within MPMX19_05981at 136.670 kb on - strand, within MPMX19_05981at 136.670 kb on - strand, within MPMX19_05981at 136.670 kb on - strand, within MPMX19_05981at 136.792 kb on + strand, within MPMX19_05981at 136.792 kb on + strand, within MPMX19_05981at 136.792 kb on + strand, within MPMX19_05981at 136.792 kb on + strand, within MPMX19_05981at 136.792 kb on + strand, within MPMX19_05981at 136.793 kb on - strand, within MPMX19_05981at 136.793 kb on - strand, within MPMX19_05981at 136.793 kb on - strand, within MPMX19_05981at 136.834 kb on + strand, within MPMX19_05981at 136.834 kb on + strand, within MPMX19_05981at 136.834 kb on + strand, within MPMX19_05981at 136.834 kb on + strand, within MPMX19_05981at 136.834 kb on + strand, within MPMX19_05981at 136.834 kb on + strand, within MPMX19_05981at 136.834 kb on + strand, within MPMX19_05981at 136.834 kb on + strand, within MPMX19_05981at 136.834 kb on + strand, within MPMX19_05981at 136.834 kb on + strand, within MPMX19_05981at 136.834 kb on + strand, within MPMX19_05981at 136.835 kb on - strand, within MPMX19_05981at 136.835 kb on - strand, within MPMX19_05981at 136.835 kb on - strand, within MPMX19_05981at 136.835 kb on - strand, within MPMX19_05981at 136.835 kb on - strand, within MPMX19_05981at 136.835 kb on - strand, within MPMX19_05981at 136.835 kb on - strand, within MPMX19_05981at 136.873 kb on + strand, within MPMX19_05981at 136.873 kb on + strand, within MPMX19_05981at 136.873 kb on + strand, within MPMX19_05981at 136.873 kb on + strand, within MPMX19_05981at 136.873 kb on + strand, within MPMX19_05981at 136.873 kb on + strand, within MPMX19_05981at 136.874 kb on - strand, within MPMX19_05981at 136.874 kb on - strand, within MPMX19_05981at 136.874 kb on - strand, within MPMX19_05981at 136.874 kb on - strand, within MPMX19_05981at 136.909 kb on + strand, within MPMX19_05981at 136.909 kb on + strand, within MPMX19_05981at 136.909 kb on + strand, within MPMX19_05981at 136.910 kb on - strand, within MPMX19_05981at 137.051 kb on + strandat 137.052 kb on - strandat 137.210 kb on + strandat 137.211 kb on - strandat 137.211 kb on - strandat 137.211 kb on - strandat 137.606 kb on + strand, within MPMX19_05982at 137.606 kb on + strand, within MPMX19_05982at 137.606 kb on + strand, within MPMX19_05982at 137.607 kb on - strand, within MPMX19_05982at 137.607 kb on - strand, within MPMX19_05982at 137.607 kb on - strand, within MPMX19_05982at 137.696 kb on + strand, within MPMX19_05982at 137.777 kb on + strand, within MPMX19_05982at 138.082 kb on - strandat 138.183 kb on + strandat 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.527 kb on + strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.528 kb on - strand, within MPMX19_05983at 138.708 kb on - strand, within MPMX19_05983at 138.708 kb on - strand, within MPMX19_05983at 138.708 kb on - strand, within MPMX19_05983at 138.732 kb on - strand, within MPMX19_05983at 138.768 kb on - strand, within MPMX19_05983at 138.768 kb on - strand, within MPMX19_05983at 138.768 kb on - strand, within MPMX19_05983at 138.768 kb on - strand, within MPMX19_05983at 138.768 kb on - strand, within MPMX19_05983at 138.768 kb on - strand, within MPMX19_05983at 138.768 kb on - strand, within MPMX19_05983at 138.768 kb on - strand, within MPMX19_05983at 138.768 kb on - strand, within MPMX19_05983at 138.836 kb on + strand, within MPMX19_05983at 138.836 kb on + strand, within MPMX19_05983at 138.836 kb on + strand, within MPMX19_05983at 138.836 kb on + strand, within MPMX19_05983at 138.837 kb on - strand, within MPMX19_05983at 138.837 kb on - strand, within MPMX19_05983at 138.860 kb on + strand, within MPMX19_05983at 138.860 kb on + strand, within MPMX19_05983at 138.860 kb on + strand, within MPMX19_05983at 138.860 kb on + strand, within MPMX19_05983at 138.860 kb on + strand, within MPMX19_05983at 138.860 kb on + strand, within MPMX19_05983at 138.860 kb on + strand, within MPMX19_05983at 138.860 kb on + strand, within MPMX19_05983at 138.861 kb on - strand, within MPMX19_05983at 138.861 kb on - strand, within MPMX19_05983at 138.983 kb on + strand, within MPMX19_05983at 138.983 kb on + strand, within MPMX19_05983at 138.983 kb on + strand, within MPMX19_05983at 138.983 kb on + strand, within MPMX19_05983at 138.983 kb on + strand, within MPMX19_05983at 138.983 kb on + strand, within MPMX19_05983at 138.983 kb on + strand, within MPMX19_05983at 138.983 kb on + strand, within MPMX19_05983at 138.983 kb on + strand, within MPMX19_05983at 138.984 kb on - strand, within MPMX19_05983at 138.984 kb on - strand, within MPMX19_05983at 138.984 kb on - strand, within MPMX19_05983at 138.984 kb on - strand, within MPMX19_05983at 138.984 kb on - strand, within MPMX19_05983at 139.097 kb on + strand, within MPMX19_05983at 139.097 kb on + strand, within MPMX19_05983at 139.097 kb on + strand, within MPMX19_05983at 139.097 kb on + strand, within MPMX19_05983at 139.097 kb on + strand, within MPMX19_05983at 139.097 kb on + strand, within MPMX19_05983at 139.097 kb on + strand, within MPMX19_05983

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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136,360 + MPMX19_05981 0.43 -0.9
136,360 + MPMX19_05981 0.43 -1.0
136,360 + MPMX19_05981 0.43 +0.3
136,360 + MPMX19_05981 0.43 -0.5
136,360 + MPMX19_05981 0.43 +0.2
136,360 + MPMX19_05981 0.43 +0.8
136,360 + MPMX19_05981 0.43 +1.7
136,360 + MPMX19_05981 0.43 +0.5
136,360 + MPMX19_05981 0.43 -1.7
136,360 + MPMX19_05981 0.43 -0.4
136,361 - MPMX19_05981 0.43 -0.5
136,361 - MPMX19_05981 0.43 -0.2
136,361 - MPMX19_05981 0.43 -1.0
136,361 - MPMX19_05981 0.43 +0.2
136,361 - MPMX19_05981 0.43 -0.2
136,361 - MPMX19_05981 0.43 -0.3
136,361 - MPMX19_05981 0.43 -1.2
136,361 - MPMX19_05981 0.43 +0.3
136,361 - MPMX19_05981 0.43 -1.0
136,361 - MPMX19_05981 0.43 +0.2
136,456 + MPMX19_05981 0.51 -0.0
136,456 + MPMX19_05981 0.51 +0.2
136,456 + MPMX19_05981 0.51 -1.3
136,456 + MPMX19_05981 0.51 +0.1
136,457 - MPMX19_05981 0.51 -0.5
136,471 + MPMX19_05981 0.52 +0.2
136,471 + MPMX19_05981 0.52 +0.7
136,471 + MPMX19_05981 0.52 -0.2
136,471 + MPMX19_05981 0.52 -1.9
136,471 + MPMX19_05981 0.52 -1.0
136,472 - MPMX19_05981 0.52 -0.5
136,472 - MPMX19_05981 0.52 +1.7
136,472 - MPMX19_05981 0.52 -0.1
136,472 - MPMX19_05981 0.52 -0.8
136,492 + MPMX19_05981 0.54 -0.3
136,492 + MPMX19_05981 0.54 -1.5
136,493 - MPMX19_05981 0.54 +0.2
136,493 - MPMX19_05981 0.54 +0.9
136,493 - MPMX19_05981 0.54 -1.1
136,493 - MPMX19_05981 0.54 +0.7
136,493 - MPMX19_05981 0.54 -1.5
136,651 + MPMX19_05981 0.67 -0.9
136,651 + MPMX19_05981 0.67 -0.6
136,651 + MPMX19_05981 0.67 -0.3
136,652 - MPMX19_05981 0.67 +0.8
136,652 - MPMX19_05981 0.67 -0.3
136,652 - MPMX19_05981 0.67 -0.1
136,652 - MPMX19_05981 0.67 +0.3
136,652 - MPMX19_05981 0.67 -1.1
136,660 + MPMX19_05981 0.68 -1.5
136,660 + MPMX19_05981 0.68 -0.3
136,661 - MPMX19_05981 0.68 +1.3
136,669 + MPMX19_05981 0.68 +0.6
136,669 + MPMX19_05981 0.68 -0.8
136,669 + MPMX19_05981 0.68 -1.7
136,669 + MPMX19_05981 0.68 -0.1
136,670 - MPMX19_05981 0.68 -0.7
136,670 - MPMX19_05981 0.68 -0.9
136,670 - MPMX19_05981 0.68 +1.2
136,670 - MPMX19_05981 0.68 -0.1
136,792 + MPMX19_05981 0.78 -0.8
136,792 + MPMX19_05981 0.78 -0.3
136,792 + MPMX19_05981 0.78 -0.5
136,792 + MPMX19_05981 0.78 -0.7
136,792 + MPMX19_05981 0.78 -1.6
136,793 - MPMX19_05981 0.79 -1.7
136,793 - MPMX19_05981 0.79 +0.2
136,793 - MPMX19_05981 0.79 -1.1
136,834 + MPMX19_05981 0.82 -0.3
136,834 + MPMX19_05981 0.82 -0.8
136,834 + MPMX19_05981 0.82 +0.5
136,834 + MPMX19_05981 0.82 -0.7
136,834 + MPMX19_05981 0.82 -0.0
136,834 + MPMX19_05981 0.82 +0.3
136,834 + MPMX19_05981 0.82 -0.4
136,834 + MPMX19_05981 0.82 -0.7
136,834 + MPMX19_05981 0.82 -0.9
136,834 + MPMX19_05981 0.82 +0.5
136,834 + MPMX19_05981 0.82 +0.0
136,835 - MPMX19_05981 0.82 +0.0
136,835 - MPMX19_05981 0.82 -1.5
136,835 - MPMX19_05981 0.82 +0.5
136,835 - MPMX19_05981 0.82 -0.4
136,835 - MPMX19_05981 0.82 -0.7
136,835 - MPMX19_05981 0.82 +1.1
136,835 - MPMX19_05981 0.82 -2.0
136,873 + MPMX19_05981 0.85 -0.8
136,873 + MPMX19_05981 0.85 -0.9
136,873 + MPMX19_05981 0.85 +0.3
136,873 + MPMX19_05981 0.85 +0.9
136,873 + MPMX19_05981 0.85 -1.3
136,873 + MPMX19_05981 0.85 -0.1
136,874 - MPMX19_05981 0.85 -0.3
136,874 - MPMX19_05981 0.85 +1.3
136,874 - MPMX19_05981 0.85 -0.3
136,874 - MPMX19_05981 0.85 -0.9
136,909 + MPMX19_05981 0.88 -0.3
136,909 + MPMX19_05981 0.88 -1.5
136,909 + MPMX19_05981 0.88 -0.7
136,910 - MPMX19_05981 0.88 +0.7
137,051 + +0.1
137,052 - -1.5
137,210 + -0.3
137,211 - -0.9
137,211 - -1.3
137,211 - +0.5
137,606 + MPMX19_05982 0.42 -1.1
137,606 + MPMX19_05982 0.42 +0.1
137,606 + MPMX19_05982 0.42 -0.6
137,607 - MPMX19_05982 0.42 -0.3
137,607 - MPMX19_05982 0.42 -0.1
137,607 - MPMX19_05982 0.42 +0.2
137,696 + MPMX19_05982 0.52 +0.4
137,777 + MPMX19_05982 0.62 -0.1
138,082 - -1.4
138,183 + +0.4
138,527 + MPMX19_05983 0.25 -0.3
138,527 + MPMX19_05983 0.25 -1.7
138,527 + MPMX19_05983 0.25 +0.9
138,527 + MPMX19_05983 0.25 -0.5
138,527 + MPMX19_05983 0.25 +0.5
138,527 + MPMX19_05983 0.25 -0.3
138,527 + MPMX19_05983 0.25 -0.9
138,527 + MPMX19_05983 0.25 -0.2
138,527 + MPMX19_05983 0.25 -0.6
138,527 + MPMX19_05983 0.25 -0.1
138,527 + MPMX19_05983 0.25 +1.1
138,527 + MPMX19_05983 0.25 -0.7
138,527 + MPMX19_05983 0.25 -1.8
138,527 + MPMX19_05983 0.25 -0.5
138,527 + MPMX19_05983 0.25 -0.4
138,527 + MPMX19_05983 0.25 -0.1
138,527 + MPMX19_05983 0.25 -0.2
138,527 + MPMX19_05983 0.25 -0.8
138,527 + MPMX19_05983 0.25 +0.5
138,527 + MPMX19_05983 0.25 -1.5
138,527 + MPMX19_05983 0.25 +0.1
138,527 + MPMX19_05983 0.25 -0.6
138,527 + MPMX19_05983 0.25 -2.0
138,528 - MPMX19_05983 0.25 -0.6
138,528 - MPMX19_05983 0.25 -0.3
138,528 - MPMX19_05983 0.25 +0.6
138,528 - MPMX19_05983 0.25 +0.0
138,528 - MPMX19_05983 0.25 -1.1
138,528 - MPMX19_05983 0.25 +0.2
138,528 - MPMX19_05983 0.25 +0.4
138,528 - MPMX19_05983 0.25 -1.3
138,528 - MPMX19_05983 0.25 -0.5
138,528 - MPMX19_05983 0.25 +0.2
138,528 - MPMX19_05983 0.25 -0.2
138,528 - MPMX19_05983 0.25 +0.5
138,528 - MPMX19_05983 0.25 +0.3
138,528 - MPMX19_05983 0.25 -0.7
138,528 - MPMX19_05983 0.25 -0.5
138,528 - MPMX19_05983 0.25 -0.3
138,528 - MPMX19_05983 0.25 -0.7
138,528 - MPMX19_05983 0.25 -0.1
138,528 - MPMX19_05983 0.25 -2.1
138,708 - MPMX19_05983 0.40 +0.1
138,708 - MPMX19_05983 0.40 -0.8
138,708 - MPMX19_05983 0.40 -0.7
138,732 - MPMX19_05983 0.42 -1.2
138,768 - MPMX19_05983 0.46 -0.8
138,768 - MPMX19_05983 0.46 +0.9
138,768 - MPMX19_05983 0.46 -0.2
138,768 - MPMX19_05983 0.46 +0.1
138,768 - MPMX19_05983 0.46 +0.7
138,768 - MPMX19_05983 0.46 -1.5
138,768 - MPMX19_05983 0.46 -2.1
138,768 - MPMX19_05983 0.46 +0.4
138,768 - MPMX19_05983 0.46 -0.6
138,836 + MPMX19_05983 0.51 -0.1
138,836 + MPMX19_05983 0.51 +3.2
138,836 + MPMX19_05983 0.51 -0.8
138,836 + MPMX19_05983 0.51 +1.1
138,837 - MPMX19_05983 0.52 -1.1
138,837 - MPMX19_05983 0.52 -0.1
138,860 + MPMX19_05983 0.53 +0.2
138,860 + MPMX19_05983 0.53 -1.1
138,860 + MPMX19_05983 0.53 -0.2
138,860 + MPMX19_05983 0.53 +0.7
138,860 + MPMX19_05983 0.53 +1.0
138,860 + MPMX19_05983 0.53 +0.1
138,860 + MPMX19_05983 0.53 -2.4
138,860 + MPMX19_05983 0.53 +0.7
138,861 - MPMX19_05983 0.54 +1.1
138,861 - MPMX19_05983 0.54 +0.5
138,983 + MPMX19_05983 0.64 -0.4
138,983 + MPMX19_05983 0.64 -0.9
138,983 + MPMX19_05983 0.64 -0.3
138,983 + MPMX19_05983 0.64 +0.1
138,983 + MPMX19_05983 0.64 +0.7
138,983 + MPMX19_05983 0.64 -1.7
138,983 + MPMX19_05983 0.64 +0.1
138,983 + MPMX19_05983 0.64 -0.3
138,983 + MPMX19_05983 0.64 -1.1
138,984 - MPMX19_05983 0.64 -1.3
138,984 - MPMX19_05983 0.64 -0.0
138,984 - MPMX19_05983 0.64 -0.7
138,984 - MPMX19_05983 0.64 -0.3
138,984 - MPMX19_05983 0.64 -0.2
139,097 + MPMX19_05983 0.74 -1.1
139,097 + MPMX19_05983 0.74 -0.2
139,097 + MPMX19_05983 0.74 -1.4
139,097 + MPMX19_05983 0.74 +0.4
139,097 + MPMX19_05983 0.74 +0.5
139,097 + MPMX19_05983 0.74 -0.9
139,097 + MPMX19_05983 0.74 +0.7

Or see this region's nucleotide sequence