Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05930

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05928 and MPMX19_05929 overlap by 26 nucleotidesMPMX19_05929 and MPMX19_05930 overlap by 105 nucleotidesMPMX19_05930 and MPMX19_05931 are separated by 238 nucleotides MPMX19_05928: MPMX19_05928 - Nitrate reductase, at 65,181 to 67,886 _05928 MPMX19_05929: MPMX19_05929 - Siroheme synthase, at 67,861 to 68,862 _05929 MPMX19_05930: MPMX19_05930 - Dipeptidyl-peptidase 6, at 68,758 to 69,546 _05930 MPMX19_05931: MPMX19_05931 - Lysine 6-dehydrogenase, at 69,785 to 70,864 _05931 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 68.155 kb on + strand, within MPMX19_05929at 68.155 kb on + strand, within MPMX19_05929at 68.155 kb on + strand, within MPMX19_05929at 68.155 kb on + strand, within MPMX19_05929at 68.155 kb on + strand, within MPMX19_05929at 68.155 kb on + strand, within MPMX19_05929at 68.155 kb on + strand, within MPMX19_05929at 68.156 kb on - strand, within MPMX19_05929at 68.156 kb on - strand, within MPMX19_05929at 68.156 kb on - strand, within MPMX19_05929at 68.156 kb on - strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.563 kb on + strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.564 kb on - strand, within MPMX19_05929at 68.565 kb on + strand, within MPMX19_05929at 68.565 kb on + strand, within MPMX19_05929at 68.566 kb on - strand, within MPMX19_05929at 68.759 kb on + strandat 68.759 kb on + strandat 68.760 kb on - strandat 69.110 kb on + strand, within MPMX19_05930at 69.110 kb on + strand, within MPMX19_05930at 69.110 kb on + strand, within MPMX19_05930at 69.110 kb on + strand, within MPMX19_05930at 69.110 kb on + strand, within MPMX19_05930at 69.111 kb on - strand, within MPMX19_05930at 69.111 kb on - strand, within MPMX19_05930at 69.111 kb on - strand, within MPMX19_05930at 69.111 kb on - strand, within MPMX19_05930at 69.199 kb on + strand, within MPMX19_05930at 69.199 kb on + strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.584 kb on + strandat 69.584 kb on + strandat 69.585 kb on - strandat 69.613 kb on + strandat 69.905 kb on + strand, within MPMX19_05931at 69.999 kb on + strand, within MPMX19_05931at 69.999 kb on + strand, within MPMX19_05931at 69.999 kb on + strand, within MPMX19_05931at 69.999 kb on + strand, within MPMX19_05931at 69.999 kb on + strand, within MPMX19_05931at 70.000 kb on - strand, within MPMX19_05931at 70.000 kb on - strand, within MPMX19_05931at 70.000 kb on - strand, within MPMX19_05931at 70.000 kb on - strand, within MPMX19_05931at 70.000 kb on - strand, within MPMX19_05931at 70.064 kb on + strand, within MPMX19_05931at 70.064 kb on + strand, within MPMX19_05931at 70.064 kb on + strand, within MPMX19_05931at 70.064 kb on + strand, within MPMX19_05931at 70.064 kb on + strand, within MPMX19_05931at 70.064 kb on + strand, within MPMX19_05931at 70.065 kb on - strand, within MPMX19_05931at 70.065 kb on - strand, within MPMX19_05931at 70.250 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.272 kb on - strand, within MPMX19_05931at 70.272 kb on - strand, within MPMX19_05931at 70.272 kb on - strand, within MPMX19_05931at 70.272 kb on - strand, within MPMX19_05931at 70.272 kb on - strand, within MPMX19_05931at 70.310 kb on + strand, within MPMX19_05931at 70.310 kb on + strand, within MPMX19_05931at 70.310 kb on + strand, within MPMX19_05931at 70.310 kb on + strand, within MPMX19_05931at 70.311 kb on - strand, within MPMX19_05931at 70.311 kb on - strand, within MPMX19_05931at 70.311 kb on - strand, within MPMX19_05931at 70.403 kb on + strand, within MPMX19_05931at 70.403 kb on + strand, within MPMX19_05931at 70.403 kb on + strand, within MPMX19_05931at 70.403 kb on + strand, within MPMX19_05931at 70.403 kb on + strand, within MPMX19_05931at 70.404 kb on - strand, within MPMX19_05931at 70.404 kb on - strand, within MPMX19_05931at 70.478 kb on + strand, within MPMX19_05931at 70.478 kb on + strand, within MPMX19_05931at 70.478 kb on + strand, within MPMX19_05931at 70.478 kb on + strand, within MPMX19_05931at 70.478 kb on + strand, within MPMX19_05931at 70.478 kb on + strand, within MPMX19_05931at 70.479 kb on - strand, within MPMX19_05931at 70.479 kb on - strand, within MPMX19_05931at 70.479 kb on - strand, within MPMX19_05931

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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68,155 + MPMX19_05929 0.29 -0.9
68,155 + MPMX19_05929 0.29 +0.1
68,155 + MPMX19_05929 0.29 -1.5
68,155 + MPMX19_05929 0.29 -0.1
68,155 + MPMX19_05929 0.29 -0.8
68,155 + MPMX19_05929 0.29 -1.3
68,155 + MPMX19_05929 0.29 +0.5
68,156 - MPMX19_05929 0.29 -0.2
68,156 - MPMX19_05929 0.29 -0.4
68,156 - MPMX19_05929 0.29 +1.0
68,156 - MPMX19_05929 0.29 -0.6
68,563 + MPMX19_05929 0.70 +0.3
68,563 + MPMX19_05929 0.70 -0.1
68,563 + MPMX19_05929 0.70 +0.6
68,563 + MPMX19_05929 0.70 -1.8
68,563 + MPMX19_05929 0.70 +0.2
68,563 + MPMX19_05929 0.70 +0.1
68,563 + MPMX19_05929 0.70 -0.7
68,563 + MPMX19_05929 0.70 +0.5
68,563 + MPMX19_05929 0.70 -0.4
68,563 + MPMX19_05929 0.70 +1.2
68,563 + MPMX19_05929 0.70 -0.8
68,563 + MPMX19_05929 0.70 +0.4
68,563 + MPMX19_05929 0.70 -1.0
68,563 + MPMX19_05929 0.70 -0.3
68,563 + MPMX19_05929 0.70 -1.1
68,564 - MPMX19_05929 0.70 -1.7
68,564 - MPMX19_05929 0.70 -0.6
68,564 - MPMX19_05929 0.70 +0.5
68,564 - MPMX19_05929 0.70 -0.0
68,564 - MPMX19_05929 0.70 -0.9
68,564 - MPMX19_05929 0.70 -1.5
68,564 - MPMX19_05929 0.70 -0.4
68,564 - MPMX19_05929 0.70 +0.7
68,564 - MPMX19_05929 0.70 +0.2
68,564 - MPMX19_05929 0.70 -1.4
68,564 - MPMX19_05929 0.70 -0.3
68,564 - MPMX19_05929 0.70 -0.8
68,564 - MPMX19_05929 0.70 +0.9
68,564 - MPMX19_05929 0.70 -1.3
68,564 - MPMX19_05929 0.70 -0.1
68,564 - MPMX19_05929 0.70 -0.0
68,564 - MPMX19_05929 0.70 +0.1
68,564 - MPMX19_05929 0.70 -0.2
68,564 - MPMX19_05929 0.70 +0.4
68,564 - MPMX19_05929 0.70 +0.9
68,564 - MPMX19_05929 0.70 +0.4
68,564 - MPMX19_05929 0.70 +0.5
68,564 - MPMX19_05929 0.70 +1.2
68,564 - MPMX19_05929 0.70 -0.3
68,564 - MPMX19_05929 0.70 -0.1
68,564 - MPMX19_05929 0.70 +0.2
68,564 - MPMX19_05929 0.70 +1.8
68,564 - MPMX19_05929 0.70 -1.1
68,565 + MPMX19_05929 0.70 -1.4
68,565 + MPMX19_05929 0.70 -0.3
68,566 - MPMX19_05929 0.70 +1.2
68,759 + -0.2
68,759 + -0.2
68,760 - +0.2
69,110 + MPMX19_05930 0.45 -0.7
69,110 + MPMX19_05930 0.45 +0.3
69,110 + MPMX19_05930 0.45 +0.3
69,110 + MPMX19_05930 0.45 +1.7
69,110 + MPMX19_05930 0.45 +1.7
69,111 - MPMX19_05930 0.45 +0.4
69,111 - MPMX19_05930 0.45 -1.8
69,111 - MPMX19_05930 0.45 -1.3
69,111 - MPMX19_05930 0.45 -0.1
69,199 + MPMX19_05930 0.56 -0.3
69,199 + MPMX19_05930 0.56 +0.1
69,200 - MPMX19_05930 0.56 -1.3
69,200 - MPMX19_05930 0.56 +0.7
69,200 - MPMX19_05930 0.56 -1.1
69,200 - MPMX19_05930 0.56 -0.4
69,200 - MPMX19_05930 0.56 -0.3
69,200 - MPMX19_05930 0.56 +1.4
69,200 - MPMX19_05930 0.56 -0.5
69,584 + -0.7
69,584 + -1.1
69,585 - -1.1
69,613 + +1.7
69,905 + MPMX19_05931 0.11 -0.7
69,999 + MPMX19_05931 0.20 -1.6
69,999 + MPMX19_05931 0.20 +0.4
69,999 + MPMX19_05931 0.20 +0.1
69,999 + MPMX19_05931 0.20 -0.7
69,999 + MPMX19_05931 0.20 -0.2
70,000 - MPMX19_05931 0.20 +4.2
70,000 - MPMX19_05931 0.20 -0.3
70,000 - MPMX19_05931 0.20 -1.5
70,000 - MPMX19_05931 0.20 +1.7
70,000 - MPMX19_05931 0.20 -1.0
70,064 + MPMX19_05931 0.26 -0.6
70,064 + MPMX19_05931 0.26 -0.2
70,064 + MPMX19_05931 0.26 +0.7
70,064 + MPMX19_05931 0.26 +1.1
70,064 + MPMX19_05931 0.26 -0.8
70,064 + MPMX19_05931 0.26 +1.7
70,065 - MPMX19_05931 0.26 -0.7
70,065 - MPMX19_05931 0.26 +0.8
70,250 + MPMX19_05931 0.43 +0.4
70,271 + MPMX19_05931 0.45 +0.7
70,271 + MPMX19_05931 0.45 -0.9
70,271 + MPMX19_05931 0.45 +1.9
70,271 + MPMX19_05931 0.45 +0.2
70,271 + MPMX19_05931 0.45 +0.7
70,271 + MPMX19_05931 0.45 +1.7
70,271 + MPMX19_05931 0.45 +2.2
70,271 + MPMX19_05931 0.45 -1.1
70,271 + MPMX19_05931 0.45 -1.2
70,272 - MPMX19_05931 0.45 +0.1
70,272 - MPMX19_05931 0.45 +0.3
70,272 - MPMX19_05931 0.45 +0.3
70,272 - MPMX19_05931 0.45 +1.7
70,272 - MPMX19_05931 0.45 -0.1
70,310 + MPMX19_05931 0.49 -1.1
70,310 + MPMX19_05931 0.49 +0.5
70,310 + MPMX19_05931 0.49 -0.7
70,310 + MPMX19_05931 0.49 +0.3
70,311 - MPMX19_05931 0.49 -0.0
70,311 - MPMX19_05931 0.49 -0.9
70,311 - MPMX19_05931 0.49 -0.9
70,403 + MPMX19_05931 0.57 -0.3
70,403 + MPMX19_05931 0.57 -0.9
70,403 + MPMX19_05931 0.57 +0.1
70,403 + MPMX19_05931 0.57 -0.1
70,403 + MPMX19_05931 0.57 -0.3
70,404 - MPMX19_05931 0.57 +1.9
70,404 - MPMX19_05931 0.57 -0.1
70,478 + MPMX19_05931 0.64 -0.2
70,478 + MPMX19_05931 0.64 +0.4
70,478 + MPMX19_05931 0.64 -0.9
70,478 + MPMX19_05931 0.64 -1.5
70,478 + MPMX19_05931 0.64 -0.3
70,478 + MPMX19_05931 0.64 -0.4
70,479 - MPMX19_05931 0.64 -0.9
70,479 - MPMX19_05931 0.64 +0.6
70,479 - MPMX19_05931 0.64 +1.7

Or see this region's nucleotide sequence