Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05873

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05871 and MPMX19_05872 are separated by 163 nucleotidesMPMX19_05872 and MPMX19_05873 are separated by 77 nucleotidesMPMX19_05873 and MPMX19_05874 are separated by 171 nucleotidesMPMX19_05874 and MPMX19_05875 overlap by 4 nucleotides MPMX19_05871: MPMX19_05871 - hypothetical protein, at 1,072 to 2,262 _05871 MPMX19_05872: MPMX19_05872 - Redox-sensitive transcriptional activator SoxR, at 2,426 to 2,881 _05872 MPMX19_05873: MPMX19_05873 - D-alanyl-D-alanine carboxypeptidase DacA, at 2,959 to 4,209 _05873 MPMX19_05874: MPMX19_05874 - 2-keto-4-pentenoate hydratase, at 4,381 to 5,118 _05874 MPMX19_05875: MPMX19_05875 - Catabolite control protein A, at 5,115 to 6,215 _05875 Position (kb) 2 3 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.093 kb on + strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.094 kb on - strand, within MPMX19_05871at 2.279 kb on + strandat 2.279 kb on + strandat 2.280 kb on - strandat 2.280 kb on - strandat 2.280 kb on - strandat 2.280 kb on - strandat 2.280 kb on - strandat 2.288 kb on + strandat 2.288 kb on + strandat 2.288 kb on + strandat 2.289 kb on - strandat 2.289 kb on - strandat 2.289 kb on - strandat 2.289 kb on - strandat 2.289 kb on - strandat 2.289 kb on - strandat 2.444 kb on + strandat 2.444 kb on + strandat 2.444 kb on + strandat 2.445 kb on - strandat 2.445 kb on - strandat 2.445 kb on - strandat 2.445 kb on - strandat 2.513 kb on + strand, within MPMX19_05872at 2.513 kb on + strand, within MPMX19_05872at 2.513 kb on + strand, within MPMX19_05872at 2.513 kb on + strand, within MPMX19_05872at 2.514 kb on - strand, within MPMX19_05872at 2.514 kb on - strand, within MPMX19_05872at 2.514 kb on - strand, within MPMX19_05872at 2.514 kb on - strand, within MPMX19_05872at 2.913 kb on + strandat 2.913 kb on + strandat 2.913 kb on + strandat 2.914 kb on - strandat 2.914 kb on - strandat 2.928 kb on + strandat 2.929 kb on - strandat 2.929 kb on - strandat 2.936 kb on + strandat 2.936 kb on + strandat 2.936 kb on + strandat 2.937 kb on - strandat 2.937 kb on - strandat 2.937 kb on - strandat 2.937 kb on - strandat 2.937 kb on - strandat 2.937 kb on - strandat 3.181 kb on + strand, within MPMX19_05873at 3.181 kb on + strand, within MPMX19_05873at 3.181 kb on + strand, within MPMX19_05873at 3.181 kb on + strand, within MPMX19_05873at 3.181 kb on + strand, within MPMX19_05873at 3.182 kb on - strand, within MPMX19_05873at 3.182 kb on - strand, within MPMX19_05873at 3.182 kb on - strand, within MPMX19_05873at 3.182 kb on - strand, within MPMX19_05873at 3.182 kb on - strand, within MPMX19_05873at 3.182 kb on - strand, within MPMX19_05873at 3.182 kb on - strand, within MPMX19_05873at 3.274 kb on + strand, within MPMX19_05873at 3.274 kb on + strand, within MPMX19_05873at 3.274 kb on + strand, within MPMX19_05873at 3.274 kb on + strand, within MPMX19_05873at 3.274 kb on + strand, within MPMX19_05873at 3.274 kb on + strand, within MPMX19_05873at 3.275 kb on - strand, within MPMX19_05873at 3.275 kb on - strand, within MPMX19_05873at 3.275 kb on - strand, within MPMX19_05873at 3.283 kb on + strand, within MPMX19_05873at 3.283 kb on + strand, within MPMX19_05873at 3.283 kb on + strand, within MPMX19_05873at 3.283 kb on + strand, within MPMX19_05873at 3.283 kb on + strand, within MPMX19_05873at 3.283 kb on + strand, within MPMX19_05873at 3.283 kb on + strand, within MPMX19_05873at 3.283 kb on + strand, within MPMX19_05873at 3.283 kb on + strand, within MPMX19_05873at 3.283 kb on + strand, within MPMX19_05873at 3.284 kb on - strand, within MPMX19_05873at 3.284 kb on - strand, within MPMX19_05873at 3.284 kb on - strand, within MPMX19_05873at 3.284 kb on - strand, within MPMX19_05873at 3.284 kb on - strand, within MPMX19_05873at 3.284 kb on - strand, within MPMX19_05873at 3.284 kb on - strand, within MPMX19_05873at 3.284 kb on - strand, within MPMX19_05873at 3.577 kb on + strand, within MPMX19_05873at 3.577 kb on + strand, within MPMX19_05873at 3.577 kb on + strand, within MPMX19_05873at 3.577 kb on + strand, within MPMX19_05873at 3.577 kb on + strand, within MPMX19_05873at 3.577 kb on + strand, within MPMX19_05873at 3.578 kb on - strand, within MPMX19_05873at 3.578 kb on - strand, within MPMX19_05873at 3.578 kb on - strand, within MPMX19_05873at 3.578 kb on - strand, within MPMX19_05873at 3.578 kb on - strand, within MPMX19_05873at 3.578 kb on - strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.646 kb on + strand, within MPMX19_05873at 3.646 kb on + strand, within MPMX19_05873at 3.646 kb on + strand, within MPMX19_05873at 3.646 kb on + strand, within MPMX19_05873at 3.647 kb on - strand, within MPMX19_05873at 3.709 kb on + strand, within MPMX19_05873at 3.710 kb on - strand, within MPMX19_05873at 3.710 kb on - strand, within MPMX19_05873at 3.710 kb on - strand, within MPMX19_05873at 3.710 kb on - strand, within MPMX19_05873at 3.895 kb on + strand, within MPMX19_05873at 3.895 kb on + strand, within MPMX19_05873at 3.896 kb on - strand, within MPMX19_05873at 3.896 kb on - strand, within MPMX19_05873at 3.896 kb on - strand, within MPMX19_05873at 4.102 kb on + strandat 4.102 kb on + strandat 4.102 kb on + strandat 4.102 kb on + strandat 4.103 kb on - strandat 4.103 kb on - strandat 4.103 kb on - strandat 4.103 kb on - strandat 4.373 kb on + strandat 4.373 kb on + strandat 4.373 kb on + strandat 4.373 kb on + strandat 4.805 kb on + strand, within MPMX19_05874at 4.805 kb on + strand, within MPMX19_05874at 4.805 kb on + strand, within MPMX19_05874at 4.806 kb on - strand, within MPMX19_05874at 4.806 kb on - strand, within MPMX19_05874at 4.806 kb on - strand, within MPMX19_05874at 4.806 kb on - strand, within MPMX19_05874at 5.024 kb on + strand, within MPMX19_05874at 5.024 kb on + strand, within MPMX19_05874at 5.024 kb on + strand, within MPMX19_05874at 5.024 kb on + strand, within MPMX19_05874at 5.025 kb on - strand, within MPMX19_05874at 5.025 kb on - strand, within MPMX19_05874

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
2,093 + MPMX19_05871 0.86 +0.7
2,093 + MPMX19_05871 0.86 -0.6
2,093 + MPMX19_05871 0.86 +0.7
2,093 + MPMX19_05871 0.86 -0.6
2,093 + MPMX19_05871 0.86 +0.4
2,093 + MPMX19_05871 0.86 +0.5
2,093 + MPMX19_05871 0.86 +0.9
2,093 + MPMX19_05871 0.86 +0.7
2,093 + MPMX19_05871 0.86 -0.1
2,093 + MPMX19_05871 0.86 -0.6
2,093 + MPMX19_05871 0.86 +1.2
2,093 + MPMX19_05871 0.86 -0.2
2,093 + MPMX19_05871 0.86 -0.7
2,093 + MPMX19_05871 0.86 -2.9
2,093 + MPMX19_05871 0.86 -1.3
2,093 + MPMX19_05871 0.86 -1.0
2,093 + MPMX19_05871 0.86 +0.3
2,093 + MPMX19_05871 0.86 -0.4
2,093 + MPMX19_05871 0.86 -1.2
2,093 + MPMX19_05871 0.86 -0.8
2,093 + MPMX19_05871 0.86 +1.4
2,093 + MPMX19_05871 0.86 -1.3
2,093 + MPMX19_05871 0.86 +1.2
2,093 + MPMX19_05871 0.86 -0.5
2,093 + MPMX19_05871 0.86 +0.3
2,093 + MPMX19_05871 0.86 -0.1
2,094 - MPMX19_05871 0.86 -1.3
2,094 - MPMX19_05871 0.86 +0.7
2,094 - MPMX19_05871 0.86 -0.5
2,094 - MPMX19_05871 0.86 -0.8
2,094 - MPMX19_05871 0.86 +0.1
2,094 - MPMX19_05871 0.86 +0.5
2,094 - MPMX19_05871 0.86 -0.8
2,094 - MPMX19_05871 0.86 +0.1
2,094 - MPMX19_05871 0.86 -1.7
2,094 - MPMX19_05871 0.86 -0.3
2,094 - MPMX19_05871 0.86 -1.9
2,094 - MPMX19_05871 0.86 +0.1
2,094 - MPMX19_05871 0.86 +0.1
2,094 - MPMX19_05871 0.86 +1.1
2,094 - MPMX19_05871 0.86 -0.7
2,094 - MPMX19_05871 0.86 +1.5
2,094 - MPMX19_05871 0.86 -1.3
2,094 - MPMX19_05871 0.86 -1.7
2,094 - MPMX19_05871 0.86 +0.1
2,094 - MPMX19_05871 0.86 -1.1
2,094 - MPMX19_05871 0.86 -1.5
2,094 - MPMX19_05871 0.86 +0.9
2,094 - MPMX19_05871 0.86 -0.7
2,094 - MPMX19_05871 0.86 +0.3
2,094 - MPMX19_05871 0.86 -0.7
2,094 - MPMX19_05871 0.86 -1.5
2,094 - MPMX19_05871 0.86 -1.1
2,094 - MPMX19_05871 0.86 -0.2
2,094 - MPMX19_05871 0.86 +0.2
2,094 - MPMX19_05871 0.86 +1.4
2,279 + +2.1
2,279 + -1.5
2,280 - -1.4
2,280 - +0.9
2,280 - +0.4
2,280 - -0.2
2,280 - +0.3
2,288 + -1.3
2,288 + -0.2
2,288 + +0.7
2,289 - +0.5
2,289 - -0.7
2,289 - -0.3
2,289 - -0.4
2,289 - +0.4
2,289 - +0.5
2,444 + -1.0
2,444 + +0.3
2,444 + +0.3
2,445 - -1.0
2,445 - -0.2
2,445 - +0.4
2,445 - -1.4
2,513 + MPMX19_05872 0.19 -0.3
2,513 + MPMX19_05872 0.19 -0.0
2,513 + MPMX19_05872 0.19 +0.3
2,513 + MPMX19_05872 0.19 +1.1
2,514 - MPMX19_05872 0.19 -0.3
2,514 - MPMX19_05872 0.19 -0.2
2,514 - MPMX19_05872 0.19 -0.7
2,514 - MPMX19_05872 0.19 -0.8
2,913 + -2.1
2,913 + +0.1
2,913 + -0.7
2,914 - -0.5
2,914 - +0.9
2,928 + -0.5
2,929 - -2.1
2,929 - -0.8
2,936 + -0.9
2,936 + +0.3
2,936 + -0.5
2,937 - -0.0
2,937 - +0.1
2,937 - +0.5
2,937 - +0.1
2,937 - -0.6
2,937 - +0.3
3,181 + MPMX19_05873 0.18 -0.8
3,181 + MPMX19_05873 0.18 -0.5
3,181 + MPMX19_05873 0.18 -0.0
3,181 + MPMX19_05873 0.18 -0.8
3,181 + MPMX19_05873 0.18 +0.0
3,182 - MPMX19_05873 0.18 -1.0
3,182 - MPMX19_05873 0.18 +0.1
3,182 - MPMX19_05873 0.18 +0.2
3,182 - MPMX19_05873 0.18 +0.9
3,182 - MPMX19_05873 0.18 +0.2
3,182 - MPMX19_05873 0.18 -1.4
3,182 - MPMX19_05873 0.18 +0.2
3,274 + MPMX19_05873 0.25 +0.1
3,274 + MPMX19_05873 0.25 -0.7
3,274 + MPMX19_05873 0.25 +0.5
3,274 + MPMX19_05873 0.25 +0.1
3,274 + MPMX19_05873 0.25 -0.0
3,274 + MPMX19_05873 0.25 +0.3
3,275 - MPMX19_05873 0.25 -0.6
3,275 - MPMX19_05873 0.25 -0.6
3,275 - MPMX19_05873 0.25 -0.3
3,283 + MPMX19_05873 0.26 +0.5
3,283 + MPMX19_05873 0.26 -0.5
3,283 + MPMX19_05873 0.26 +1.1
3,283 + MPMX19_05873 0.26 -0.7
3,283 + MPMX19_05873 0.26 -0.9
3,283 + MPMX19_05873 0.26 -0.6
3,283 + MPMX19_05873 0.26 +1.7
3,283 + MPMX19_05873 0.26 +0.1
3,283 + MPMX19_05873 0.26 +0.4
3,283 + MPMX19_05873 0.26 -0.8
3,284 - MPMX19_05873 0.26 -0.7
3,284 - MPMX19_05873 0.26 +0.1
3,284 - MPMX19_05873 0.26 -0.1
3,284 - MPMX19_05873 0.26 -0.3
3,284 - MPMX19_05873 0.26 +0.6
3,284 - MPMX19_05873 0.26 -0.9
3,284 - MPMX19_05873 0.26 +0.9
3,284 - MPMX19_05873 0.26 +0.2
3,577 + MPMX19_05873 0.49 -0.9
3,577 + MPMX19_05873 0.49 -2.0
3,577 + MPMX19_05873 0.49 -1.6
3,577 + MPMX19_05873 0.49 -0.1
3,577 + MPMX19_05873 0.49 -2.9
3,577 + MPMX19_05873 0.49 -0.5
3,578 - MPMX19_05873 0.49 +0.2
3,578 - MPMX19_05873 0.49 -1.4
3,578 - MPMX19_05873 0.49 -0.1
3,578 - MPMX19_05873 0.49 -0.3
3,578 - MPMX19_05873 0.49 +0.8
3,578 - MPMX19_05873 0.49 -0.3
3,640 + MPMX19_05873 0.54 -1.3
3,640 + MPMX19_05873 0.54 -0.1
3,640 + MPMX19_05873 0.54 +0.4
3,640 + MPMX19_05873 0.54 -0.1
3,640 + MPMX19_05873 0.54 -0.1
3,640 + MPMX19_05873 0.54 -0.5
3,640 + MPMX19_05873 0.54 -1.4
3,640 + MPMX19_05873 0.54 -0.3
3,640 + MPMX19_05873 0.54 -0.9
3,640 + MPMX19_05873 0.54 -0.5
3,640 + MPMX19_05873 0.54 +0.2
3,640 + MPMX19_05873 0.54 -0.2
3,640 + MPMX19_05873 0.54 -0.6
3,641 - MPMX19_05873 0.55 +1.3
3,641 - MPMX19_05873 0.55 -0.7
3,641 - MPMX19_05873 0.55 -0.7
3,641 - MPMX19_05873 0.55 -0.6
3,641 - MPMX19_05873 0.55 -0.9
3,641 - MPMX19_05873 0.55 -0.2
3,641 - MPMX19_05873 0.55 -2.0
3,641 - MPMX19_05873 0.55 +0.1
3,641 - MPMX19_05873 0.55 +0.8
3,646 + MPMX19_05873 0.55 -0.3
3,646 + MPMX19_05873 0.55 +0.9
3,646 + MPMX19_05873 0.55 -1.2
3,646 + MPMX19_05873 0.55 -0.1
3,647 - MPMX19_05873 0.55 -0.6
3,709 + MPMX19_05873 0.60 +0.4
3,710 - MPMX19_05873 0.60 -0.4
3,710 - MPMX19_05873 0.60 +0.0
3,710 - MPMX19_05873 0.60 -0.5
3,710 - MPMX19_05873 0.60 +0.7
3,895 + MPMX19_05873 0.75 +1.1
3,895 + MPMX19_05873 0.75 +0.7
3,896 - MPMX19_05873 0.75 -0.0
3,896 - MPMX19_05873 0.75 +1.2
3,896 - MPMX19_05873 0.75 +0.1
4,102 + -1.1
4,102 + -0.1
4,102 + +0.0
4,102 + -0.1
4,103 - -0.5
4,103 - +0.2
4,103 - +1.1
4,103 - +0.2
4,373 + +0.3
4,373 + +0.4
4,373 + -1.3
4,373 + +0.8
4,805 + MPMX19_05874 0.57 -0.5
4,805 + MPMX19_05874 0.57 +0.8
4,805 + MPMX19_05874 0.57 -0.7
4,806 - MPMX19_05874 0.58 +0.1
4,806 - MPMX19_05874 0.58 +0.5
4,806 - MPMX19_05874 0.58 -0.5
4,806 - MPMX19_05874 0.58 +0.3
5,024 + MPMX19_05874 0.87 -0.8
5,024 + MPMX19_05874 0.87 -1.5
5,024 + MPMX19_05874 0.87 +0.7
5,024 + MPMX19_05874 0.87 -0.5
5,025 - MPMX19_05874 0.87 +0.3
5,025 - MPMX19_05874 0.87 -2.2

Or see this region's nucleotide sequence