Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05853

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05851 and MPMX19_05852 are separated by 10 nucleotidesMPMX19_05852 and MPMX19_05853 overlap by 11 nucleotidesMPMX19_05853 and MPMX19_05854 overlap by 4 nucleotides MPMX19_05851: MPMX19_05851 - Putative amino-acid ABC transporter-binding protein YhdW, at 586,201 to 587,232 _05851 MPMX19_05852: MPMX19_05852 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 587,243 to 587,956 _05852 MPMX19_05853: MPMX19_05853 - Lipopolysaccharide export system ATP-binding protein LptB, at 587,946 to 588,701 _05853 MPMX19_05854: MPMX19_05854 - hypothetical protein, at 588,698 to 589,720 _05854 Position (kb) 587 588 589Strain fitness (log2 ratio) -2 -1 0 1 2at 587.125 kb on + strand, within MPMX19_05851at 587.125 kb on + strand, within MPMX19_05851at 587.125 kb on + strand, within MPMX19_05851at 587.125 kb on + strand, within MPMX19_05851at 587.126 kb on - strand, within MPMX19_05851at 587.126 kb on - strand, within MPMX19_05851at 587.126 kb on - strand, within MPMX19_05851at 587.212 kb on + strandat 587.212 kb on + strandat 587.212 kb on + strandat 587.213 kb on - strandat 587.213 kb on - strandat 587.244 kb on + strandat 587.245 kb on - strandat 587.245 kb on - strandat 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.598 kb on + strand, within MPMX19_05852at 587.599 kb on - strand, within MPMX19_05852at 587.599 kb on - strand, within MPMX19_05852at 587.599 kb on - strand, within MPMX19_05852at 587.599 kb on - strand, within MPMX19_05852at 587.599 kb on - strand, within MPMX19_05852at 587.599 kb on - strand, within MPMX19_05852at 587.697 kb on + strand, within MPMX19_05852at 587.697 kb on + strand, within MPMX19_05852at 587.697 kb on + strand, within MPMX19_05852at 587.697 kb on + strand, within MPMX19_05852at 587.698 kb on - strand, within MPMX19_05852at 587.698 kb on - strand, within MPMX19_05852at 587.698 kb on - strand, within MPMX19_05852at 587.698 kb on - strand, within MPMX19_05852at 587.698 kb on - strand, within MPMX19_05852at 587.905 kb on - strandat 587.974 kb on + strandat 587.974 kb on + strandat 587.974 kb on + strandat 587.974 kb on + strandat 587.974 kb on + strandat 587.974 kb on + strandat 587.974 kb on + strandat 587.975 kb on - strandat 587.975 kb on - strandat 587.975 kb on - strandat 587.975 kb on - strandat 588.083 kb on - strand, within MPMX19_05853at 588.253 kb on + strand, within MPMX19_05853at 588.253 kb on + strand, within MPMX19_05853at 588.253 kb on + strand, within MPMX19_05853at 588.253 kb on + strand, within MPMX19_05853at 588.254 kb on - strand, within MPMX19_05853at 588.254 kb on - strand, within MPMX19_05853at 588.254 kb on - strand, within MPMX19_05853at 588.254 kb on - strand, within MPMX19_05853at 588.254 kb on - strand, within MPMX19_05853at 588.254 kb on - strand, within MPMX19_05853at 588.841 kb on + strand, within MPMX19_05854at 588.842 kb on - strand, within MPMX19_05854at 588.842 kb on - strand, within MPMX19_05854at 588.842 kb on - strand, within MPMX19_05854at 588.885 kb on + strand, within MPMX19_05854at 588.885 kb on + strand, within MPMX19_05854at 588.885 kb on + strand, within MPMX19_05854at 588.885 kb on + strand, within MPMX19_05854at 588.885 kb on + strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 588.886 kb on - strand, within MPMX19_05854at 589.026 kb on + strand, within MPMX19_05854at 589.026 kb on + strand, within MPMX19_05854at 589.026 kb on + strand, within MPMX19_05854at 589.027 kb on - strand, within MPMX19_05854at 589.027 kb on - strand, within MPMX19_05854at 589.027 kb on - strand, within MPMX19_05854at 589.041 kb on + strand, within MPMX19_05854at 589.041 kb on + strand, within MPMX19_05854at 589.041 kb on + strand, within MPMX19_05854at 589.042 kb on - strand, within MPMX19_05854at 589.042 kb on - strand, within MPMX19_05854at 589.042 kb on - strand, within MPMX19_05854at 589.042 kb on - strand, within MPMX19_05854at 589.042 kb on - strand, within MPMX19_05854at 589.179 kb on + strand, within MPMX19_05854at 589.179 kb on + strand, within MPMX19_05854at 589.179 kb on + strand, within MPMX19_05854at 589.179 kb on + strand, within MPMX19_05854at 589.179 kb on + strand, within MPMX19_05854at 589.179 kb on + strand, within MPMX19_05854at 589.179 kb on + strand, within MPMX19_05854at 589.179 kb on + strand, within MPMX19_05854at 589.180 kb on - strand, within MPMX19_05854at 589.180 kb on - strand, within MPMX19_05854at 589.180 kb on - strand, within MPMX19_05854at 589.180 kb on - strand, within MPMX19_05854at 589.180 kb on - strand, within MPMX19_05854at 589.180 kb on - strand, within MPMX19_05854at 589.180 kb on - strand, within MPMX19_05854at 589.180 kb on - strand, within MPMX19_05854at 589.180 kb on - strand, within MPMX19_05854at 589.180 kb on - strand, within MPMX19_05854at 589.180 kb on - strand, within MPMX19_05854at 589.458 kb on + strand, within MPMX19_05854at 589.458 kb on + strand, within MPMX19_05854at 589.458 kb on + strand, within MPMX19_05854at 589.459 kb on - strand, within MPMX19_05854at 589.459 kb on - strand, within MPMX19_05854at 589.459 kb on - strand, within MPMX19_05854at 589.459 kb on - strand, within MPMX19_05854at 589.510 kb on - strand, within MPMX19_05854at 589.596 kb on + strand, within MPMX19_05854at 589.596 kb on + strand, within MPMX19_05854at 589.597 kb on - strand, within MPMX19_05854at 589.597 kb on - strand, within MPMX19_05854at 589.597 kb on - strand, within MPMX19_05854at 589.597 kb on - strand, within MPMX19_05854

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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587,125 + MPMX19_05851 0.90 -0.9
587,125 + MPMX19_05851 0.90 +0.7
587,125 + MPMX19_05851 0.90 +0.4
587,125 + MPMX19_05851 0.90 +0.2
587,126 - MPMX19_05851 0.90 -0.1
587,126 - MPMX19_05851 0.90 +1.1
587,126 - MPMX19_05851 0.90 +1.1
587,212 + -0.7
587,212 + +1.9
587,212 + -1.9
587,213 - +0.3
587,213 - -0.4
587,244 + -1.0
587,245 - -1.3
587,245 - +0.7
587,598 + MPMX19_05852 0.50 +0.9
587,598 + MPMX19_05852 0.50 +0.4
587,598 + MPMX19_05852 0.50 -0.1
587,598 + MPMX19_05852 0.50 -0.1
587,598 + MPMX19_05852 0.50 +0.0
587,598 + MPMX19_05852 0.50 -0.7
587,598 + MPMX19_05852 0.50 +0.5
587,598 + MPMX19_05852 0.50 +1.0
587,598 + MPMX19_05852 0.50 -0.7
587,598 + MPMX19_05852 0.50 +0.1
587,599 - MPMX19_05852 0.50 +0.2
587,599 - MPMX19_05852 0.50 -1.4
587,599 - MPMX19_05852 0.50 +0.6
587,599 - MPMX19_05852 0.50 +0.9
587,599 - MPMX19_05852 0.50 +0.2
587,599 - MPMX19_05852 0.50 +1.3
587,697 + MPMX19_05852 0.64 +0.3
587,697 + MPMX19_05852 0.64 +0.0
587,697 + MPMX19_05852 0.64 +0.8
587,697 + MPMX19_05852 0.64 +0.2
587,698 - MPMX19_05852 0.64 +0.0
587,698 - MPMX19_05852 0.64 +0.4
587,698 - MPMX19_05852 0.64 -0.1
587,698 - MPMX19_05852 0.64 -0.6
587,698 - MPMX19_05852 0.64 -0.4
587,905 - +1.6
587,974 + -0.2
587,974 + +0.3
587,974 + +0.1
587,974 + +0.0
587,974 + +0.2
587,974 + -0.7
587,974 + +0.8
587,975 - -2.0
587,975 - +0.1
587,975 - -1.2
587,975 - -1.2
588,083 - MPMX19_05853 0.18 +0.0
588,253 + MPMX19_05853 0.41 -0.4
588,253 + MPMX19_05853 0.41 +0.0
588,253 + MPMX19_05853 0.41 -1.2
588,253 + MPMX19_05853 0.41 +0.6
588,254 - MPMX19_05853 0.41 +0.0
588,254 - MPMX19_05853 0.41 +0.1
588,254 - MPMX19_05853 0.41 -0.4
588,254 - MPMX19_05853 0.41 -1.2
588,254 - MPMX19_05853 0.41 -0.6
588,254 - MPMX19_05853 0.41 -0.8
588,841 + MPMX19_05854 0.14 +0.1
588,842 - MPMX19_05854 0.14 -1.2
588,842 - MPMX19_05854 0.14 -0.6
588,842 - MPMX19_05854 0.14 +1.1
588,885 + MPMX19_05854 0.18 -0.9
588,885 + MPMX19_05854 0.18 +0.4
588,885 + MPMX19_05854 0.18 -0.1
588,885 + MPMX19_05854 0.18 +0.9
588,885 + MPMX19_05854 0.18 -0.7
588,886 - MPMX19_05854 0.18 -0.7
588,886 - MPMX19_05854 0.18 -1.4
588,886 - MPMX19_05854 0.18 +0.4
588,886 - MPMX19_05854 0.18 -1.0
588,886 - MPMX19_05854 0.18 -1.4
588,886 - MPMX19_05854 0.18 +0.3
588,886 - MPMX19_05854 0.18 -1.6
589,026 + MPMX19_05854 0.32 -1.7
589,026 + MPMX19_05854 0.32 -1.4
589,026 + MPMX19_05854 0.32 +2.6
589,027 - MPMX19_05854 0.32 +0.7
589,027 - MPMX19_05854 0.32 -0.4
589,027 - MPMX19_05854 0.32 +1.0
589,041 + MPMX19_05854 0.34 +0.1
589,041 + MPMX19_05854 0.34 -0.6
589,041 + MPMX19_05854 0.34 +0.3
589,042 - MPMX19_05854 0.34 -0.4
589,042 - MPMX19_05854 0.34 +0.2
589,042 - MPMX19_05854 0.34 +1.3
589,042 - MPMX19_05854 0.34 -1.9
589,042 - MPMX19_05854 0.34 -2.2
589,179 + MPMX19_05854 0.47 +0.9
589,179 + MPMX19_05854 0.47 -1.6
589,179 + MPMX19_05854 0.47 -1.2
589,179 + MPMX19_05854 0.47 -1.4
589,179 + MPMX19_05854 0.47 +2.0
589,179 + MPMX19_05854 0.47 -0.2
589,179 + MPMX19_05854 0.47 -2.0
589,179 + MPMX19_05854 0.47 +1.0
589,180 - MPMX19_05854 0.47 -1.4
589,180 - MPMX19_05854 0.47 -0.4
589,180 - MPMX19_05854 0.47 -0.4
589,180 - MPMX19_05854 0.47 +0.2
589,180 - MPMX19_05854 0.47 -0.4
589,180 - MPMX19_05854 0.47 -0.2
589,180 - MPMX19_05854 0.47 -0.2
589,180 - MPMX19_05854 0.47 -1.7
589,180 - MPMX19_05854 0.47 +0.0
589,180 - MPMX19_05854 0.47 -0.5
589,180 - MPMX19_05854 0.47 -1.1
589,458 + MPMX19_05854 0.74 -0.2
589,458 + MPMX19_05854 0.74 +0.3
589,458 + MPMX19_05854 0.74 +0.4
589,459 - MPMX19_05854 0.74 -0.4
589,459 - MPMX19_05854 0.74 -2.6
589,459 - MPMX19_05854 0.74 -2.1
589,459 - MPMX19_05854 0.74 -0.5
589,510 - MPMX19_05854 0.79 +0.3
589,596 + MPMX19_05854 0.88 +0.9
589,596 + MPMX19_05854 0.88 -1.7
589,597 - MPMX19_05854 0.88 +1.1
589,597 - MPMX19_05854 0.88 -0.2
589,597 - MPMX19_05854 0.88 -1.5
589,597 - MPMX19_05854 0.88 -0.2

Or see this region's nucleotide sequence