Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05847 and MPMX19_05848 are separated by 20 nucleotides MPMX19_05848 and MPMX19_05849 are separated by 35 nucleotides
MPMX19_05847: MPMX19_05847 - Inner membrane amino-acid ABC transporter permease protein YhdY, at 580,686 to 581,861
_05847
MPMX19_05848: MPMX19_05848 - Glutamine transport ATP-binding protein GlnQ, at 581,882 to 582,625
_05848
MPMX19_05849: MPMX19_05849 - TorCAD operon transcriptional regulatory protein TorR, at 582,661 to 583,368
_05849
Position (kb) 581
582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 581.040 kb on + strand, within MPMX19_05847 at 581.040 kb on + strand, within MPMX19_05847 at 581.040 kb on + strand, within MPMX19_05847 at 581.040 kb on + strand, within MPMX19_05847 at 581.040 kb on + strand, within MPMX19_05847 at 581.040 kb on + strand, within MPMX19_05847 at 581.040 kb on + strand, within MPMX19_05847 at 581.041 kb on - strand, within MPMX19_05847 at 581.041 kb on - strand, within MPMX19_05847 at 581.041 kb on - strand, within MPMX19_05847 at 581.041 kb on - strand, within MPMX19_05847 at 581.041 kb on - strand, within MPMX19_05847 at 581.041 kb on - strand, within MPMX19_05847 at 581.046 kb on + strand, within MPMX19_05847 at 581.046 kb on + strand, within MPMX19_05847 at 581.046 kb on + strand, within MPMX19_05847 at 581.047 kb on - strand, within MPMX19_05847 at 581.047 kb on - strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.544 kb on + strand, within MPMX19_05847 at 581.545 kb on - strand, within MPMX19_05847 at 581.545 kb on - strand, within MPMX19_05847 at 581.545 kb on - strand, within MPMX19_05847 at 581.574 kb on + strand, within MPMX19_05847 at 581.574 kb on + strand, within MPMX19_05847 at 581.574 kb on + strand, within MPMX19_05847 at 581.574 kb on + strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.694 kb on + strand, within MPMX19_05847 at 581.694 kb on + strand, within MPMX19_05847 at 581.694 kb on + strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.748 kb on + strand at 581.748 kb on + strand at 581.749 kb on - strand at 581.749 kb on - strand at 581.749 kb on - strand at 581.749 kb on - strand at 581.749 kb on - strand at 581.763 kb on + strand at 581.763 kb on + strand at 581.763 kb on + strand at 581.763 kb on + strand at 581.763 kb on + strand at 581.763 kb on + strand at 581.763 kb on + strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.814 kb on + strand at 581.815 kb on - strand at 581.847 kb on + strand at 581.847 kb on + strand at 581.847 kb on + strand at 581.847 kb on + strand at 581.847 kb on + strand at 581.848 kb on - strand at 581.848 kb on - strand at 581.848 kb on - strand at 581.848 kb on - strand at 581.927 kb on + strand at 581.928 kb on - strand at 581.936 kb on + strand at 581.936 kb on + strand at 581.936 kb on + strand at 581.936 kb on + strand at 581.937 kb on - strand at 581.937 kb on - strand at 581.937 kb on - strand at 581.937 kb on - strand at 581.937 kb on - strand at 581.937 kb on - strand at 581.937 kb on - strand at 582.254 kb on + strand, within MPMX19_05848 at 582.254 kb on + strand, within MPMX19_05848 at 582.254 kb on + strand, within MPMX19_05848 at 582.254 kb on + strand, within MPMX19_05848 at 582.254 kb on + strand, within MPMX19_05848 at 582.254 kb on + strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.511 kb on + strand, within MPMX19_05848 at 582.511 kb on + strand, within MPMX19_05848 at 582.511 kb on + strand, within MPMX19_05848 at 582.512 kb on - strand, within MPMX19_05848 at 582.512 kb on - strand, within MPMX19_05848 at 582.512 kb on - strand, within MPMX19_05848 at 582.512 kb on - strand, within MPMX19_05848 at 582.512 kb on - strand, within MPMX19_05848 at 582.630 kb on + strand at 582.630 kb on + strand at 582.630 kb on + strand at 582.630 kb on + strand at 582.631 kb on - strand at 582.631 kb on - strand at 582.631 kb on - strand at 582.631 kb on - strand at 582.631 kb on - strand at 582.631 kb on - strand at 582.721 kb on + strand at 582.721 kb on + strand at 582.721 kb on + strand at 582.721 kb on + strand at 582.722 kb on - strand at 582.722 kb on - strand at 582.722 kb on - strand at 582.722 kb on - strand at 582.955 kb on + strand, within MPMX19_05849 at 582.955 kb on + strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 583.195 kb on + strand, within MPMX19_05849 at 583.196 kb on - strand, within MPMX19_05849 at 583.196 kb on - strand, within MPMX19_05849 at 583.196 kb on - strand, within MPMX19_05849 at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.334 kb on - strand at 583.334 kb on - strand at 583.334 kb on - strand at 583.334 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.535 kb on + strand at 583.535 kb on + strand at 583.535 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 581,040 + MPMX19_05847 0.30 +0.0 581,040 + MPMX19_05847 0.30 -0.6 581,040 + MPMX19_05847 0.30 -2.5 581,040 + MPMX19_05847 0.30 -0.4 581,040 + MPMX19_05847 0.30 +0.6 581,040 + MPMX19_05847 0.30 -2.1 581,040 + MPMX19_05847 0.30 +0.3 581,041 - MPMX19_05847 0.30 -1.8 581,041 - MPMX19_05847 0.30 +0.0 581,041 - MPMX19_05847 0.30 +0.3 581,041 - MPMX19_05847 0.30 -1.2 581,041 - MPMX19_05847 0.30 -0.7 581,041 - MPMX19_05847 0.30 +0.1 581,046 + MPMX19_05847 0.31 -0.1 581,046 + MPMX19_05847 0.31 -0.8 581,046 + MPMX19_05847 0.31 -0.6 581,047 - MPMX19_05847 0.31 -0.3 581,047 - MPMX19_05847 0.31 +0.2 581,208 + MPMX19_05847 0.44 +0.7 581,208 + MPMX19_05847 0.44 -1.2 581,208 + MPMX19_05847 0.44 -1.0 581,208 + MPMX19_05847 0.44 -1.0 581,208 + MPMX19_05847 0.44 +0.4 581,208 + MPMX19_05847 0.44 +0.6 581,208 + MPMX19_05847 0.44 -0.7 581,208 + MPMX19_05847 0.44 +0.3 581,208 + MPMX19_05847 0.44 -0.1 581,208 + MPMX19_05847 0.44 +0.9 581,208 + MPMX19_05847 0.44 -1.2 581,208 + MPMX19_05847 0.44 +0.8 581,208 + MPMX19_05847 0.44 -0.4 581,208 + MPMX19_05847 0.44 -0.3 581,208 + MPMX19_05847 0.44 +0.4 581,209 - MPMX19_05847 0.44 -0.6 581,209 - MPMX19_05847 0.44 -0.1 581,209 - MPMX19_05847 0.44 -0.8 581,209 - MPMX19_05847 0.44 -2.2 581,209 - MPMX19_05847 0.44 -1.4 581,209 - MPMX19_05847 0.44 +0.6 581,209 - MPMX19_05847 0.44 -0.2 581,209 - MPMX19_05847 0.44 +0.5 581,209 - MPMX19_05847 0.44 -0.3 581,209 - MPMX19_05847 0.44 -0.9 581,209 - MPMX19_05847 0.44 -0.3 581,209 - MPMX19_05847 0.44 -1.2 581,209 - MPMX19_05847 0.44 -0.3 581,209 - MPMX19_05847 0.44 -1.1 581,209 - MPMX19_05847 0.44 +0.0 581,209 - MPMX19_05847 0.44 -0.7 581,209 - MPMX19_05847 0.44 -0.4 581,209 - MPMX19_05847 0.44 -0.3 581,209 - MPMX19_05847 0.44 -0.9 581,209 - MPMX19_05847 0.44 +0.2 581,209 - MPMX19_05847 0.44 -0.4 581,209 - MPMX19_05847 0.44 +0.2 581,209 - MPMX19_05847 0.44 +0.7 581,209 - MPMX19_05847 0.44 -0.3 581,209 - MPMX19_05847 0.44 +0.7 581,209 - MPMX19_05847 0.44 -0.5 581,209 - MPMX19_05847 0.44 +1.1 581,209 - MPMX19_05847 0.44 -0.7 581,209 - MPMX19_05847 0.44 +1.1 581,209 - MPMX19_05847 0.44 +0.1 581,209 - MPMX19_05847 0.44 -1.2 581,209 - MPMX19_05847 0.44 -1.8 581,209 - MPMX19_05847 0.44 -0.4 581,209 - MPMX19_05847 0.44 +0.7 581,209 - MPMX19_05847 0.44 -0.6 581,209 - MPMX19_05847 0.44 +1.0 581,209 - MPMX19_05847 0.44 -0.8 581,209 - MPMX19_05847 0.44 +0.1 581,209 - MPMX19_05847 0.44 +0.3 581,209 - MPMX19_05847 0.44 +0.5 581,209 - MPMX19_05847 0.44 -2.4 581,544 + MPMX19_05847 0.73 +0.4 581,545 - MPMX19_05847 0.73 -0.2 581,545 - MPMX19_05847 0.73 +0.0 581,545 - MPMX19_05847 0.73 +0.4 581,574 + MPMX19_05847 0.76 +1.0 581,574 + MPMX19_05847 0.76 -0.7 581,574 + MPMX19_05847 0.76 +1.0 581,574 + MPMX19_05847 0.76 +0.9 581,575 - MPMX19_05847 0.76 +0.7 581,575 - MPMX19_05847 0.76 -0.4 581,575 - MPMX19_05847 0.76 -1.3 581,575 - MPMX19_05847 0.76 -2.0 581,575 - MPMX19_05847 0.76 -0.5 581,575 - MPMX19_05847 0.76 -0.4 581,575 - MPMX19_05847 0.76 -1.1 581,694 + MPMX19_05847 0.86 -1.0 581,694 + MPMX19_05847 0.86 -1.7 581,694 + MPMX19_05847 0.86 -2.2 581,695 - MPMX19_05847 0.86 +0.0 581,695 - MPMX19_05847 0.86 -0.7 581,695 - MPMX19_05847 0.86 +0.1 581,695 - MPMX19_05847 0.86 -1.6 581,695 - MPMX19_05847 0.86 -0.7 581,695 - MPMX19_05847 0.86 +0.0 581,695 - MPMX19_05847 0.86 -0.1 581,695 - MPMX19_05847 0.86 -1.5 581,748 + -1.0 581,748 + -1.3 581,749 - +0.1 581,749 - +0.0 581,749 - -1.0 581,749 - -0.0 581,749 - +0.1 581,763 + -1.4 581,763 + +0.8 581,763 + -0.1 581,763 + -0.3 581,763 + +2.0 581,763 + +0.7 581,763 + -0.3 581,764 - -0.1 581,764 - -1.0 581,764 - +1.2 581,764 - -0.7 581,764 - -1.0 581,764 - -0.3 581,764 - +1.0 581,764 - -0.7 581,764 - -0.5 581,764 - -0.3 581,764 - +0.9 581,764 - -1.3 581,764 - +0.2 581,764 - -0.2 581,764 - -2.0 581,764 - -0.2 581,814 + -2.9 581,815 - -1.1 581,847 + -0.8 581,847 + -1.0 581,847 + -0.2 581,847 + +0.1 581,847 + +0.3 581,848 - +0.8 581,848 - -1.0 581,848 - +0.2 581,848 - +0.9 581,927 + +0.8 581,928 - +0.7 581,936 + +0.0 581,936 + +0.2 581,936 + +0.3 581,936 + -0.7 581,937 - +0.0 581,937 - -0.8 581,937 - -1.0 581,937 - -0.1 581,937 - -2.1 581,937 - +0.7 581,937 - -0.2 582,254 + MPMX19_05848 0.50 +0.2 582,254 + MPMX19_05848 0.50 -0.7 582,254 + MPMX19_05848 0.50 +0.4 582,254 + MPMX19_05848 0.50 -0.1 582,254 + MPMX19_05848 0.50 +0.7 582,254 + MPMX19_05848 0.50 -1.2 582,255 - MPMX19_05848 0.50 -0.6 582,255 - MPMX19_05848 0.50 -1.3 582,255 - MPMX19_05848 0.50 -0.1 582,255 - MPMX19_05848 0.50 +0.6 582,255 - MPMX19_05848 0.50 -0.4 582,255 - MPMX19_05848 0.50 -0.9 582,255 - MPMX19_05848 0.50 +0.0 582,255 - MPMX19_05848 0.50 -0.8 582,255 - MPMX19_05848 0.50 -0.5 582,255 - MPMX19_05848 0.50 -0.7 582,255 - MPMX19_05848 0.50 -2.5 582,511 + MPMX19_05848 0.85 +0.6 582,511 + MPMX19_05848 0.85 -0.9 582,511 + MPMX19_05848 0.85 -0.3 582,512 - MPMX19_05848 0.85 -1.0 582,512 - MPMX19_05848 0.85 -0.7 582,512 - MPMX19_05848 0.85 -1.2 582,512 - MPMX19_05848 0.85 -0.9 582,512 - MPMX19_05848 0.85 -3.0 582,630 + -0.8 582,630 + -0.9 582,630 + +1.1 582,630 + -1.4 582,631 - -0.3 582,631 - +0.2 582,631 - -0.9 582,631 - -0.1 582,631 - -2.3 582,631 - -2.4 582,721 + +1.4 582,721 + -0.6 582,721 + -0.1 582,721 + -0.3 582,722 - +0.4 582,722 - +0.2 582,722 - -0.9 582,722 - -0.9 582,955 + MPMX19_05849 0.42 +1.1 582,955 + MPMX19_05849 0.42 +0.3 582,956 - MPMX19_05849 0.42 -0.2 582,956 - MPMX19_05849 0.42 -0.1 582,956 - MPMX19_05849 0.42 -1.1 582,956 - MPMX19_05849 0.42 -0.7 582,956 - MPMX19_05849 0.42 -0.2 583,195 + MPMX19_05849 0.75 -0.7 583,196 - MPMX19_05849 0.76 -1.1 583,196 - MPMX19_05849 0.76 -0.1 583,196 - MPMX19_05849 0.76 -0.4 583,333 + +1.6 583,333 + -0.2 583,333 + -0.3 583,333 + -0.7 583,333 + -1.2 583,333 + -0.3 583,334 - +0.1 583,334 - -1.2 583,334 - +0.1 583,334 - +0.0 583,490 - -0.3 583,490 - +0.5 583,490 - +0.7 583,490 - -0.1 583,490 - -0.4 583,490 - -0.4 583,490 - -0.2 583,490 - -0.4 583,490 - +1.8 583,490 - -0.9 583,490 - -0.3 583,490 - +0.9 583,490 - -0.8 583,490 - +0.8 583,490 - -1.4 583,490 - -0.4 583,490 - +0.1 583,535 + +0.6 583,535 + -0.5 583,535 + +0.3 583,537 + -0.7 583,537 + -1.2 583,537 + +0.0 583,537 + -2.0 583,537 + -0.1 583,537 + -0.9 583,537 + -0.5 583,537 + -0.2 583,537 + -0.9 583,537 + -0.3 583,537 + -1.1
Or see this region's nucleotide sequence