Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05838 and MPMX19_05839 are separated by 69 nucleotides MPMX19_05839 and MPMX19_05840 are separated by 161 nucleotides
MPMX19_05838: MPMX19_05838 - hypothetical protein, at 569,370 to 570,341
_05838
MPMX19_05839: MPMX19_05839 - Chemoreceptor glutamine deamidase CheD, at 570,411 to 571,061
_05839
MPMX19_05840: MPMX19_05840 - hypothetical protein, at 571,223 to 572,704
_05840
Position (kb) 570
571
572 Strain fitness (log2 ratio) -2
-1
0
1
2 at 569.551 kb on + strand, within MPMX19_05838 at 569.551 kb on + strand, within MPMX19_05838 at 569.552 kb on - strand, within MPMX19_05838 at 569.552 kb on - strand, within MPMX19_05838 at 569.552 kb on - strand, within MPMX19_05838 at 569.552 kb on - strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.783 kb on - strand, within MPMX19_05838 at 569.783 kb on - strand, within MPMX19_05838 at 569.783 kb on - strand, within MPMX19_05838 at 569.783 kb on - strand, within MPMX19_05838 at 570.113 kb on - strand, within MPMX19_05838 at 570.121 kb on + strand, within MPMX19_05838 at 570.121 kb on + strand, within MPMX19_05838 at 570.122 kb on - strand, within MPMX19_05838 at 570.122 kb on - strand, within MPMX19_05838 at 570.122 kb on - strand, within MPMX19_05838 at 570.122 kb on - strand, within MPMX19_05838 at 570.409 kb on + strand at 570.410 kb on - strand at 570.410 kb on - strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.773 kb on - strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.976 kb on + strand, within MPMX19_05839 at 570.977 kb on - strand, within MPMX19_05839 at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.136 kb on - strand at 571.208 kb on + strand at 571.208 kb on + strand at 571.209 kb on - strand at 571.209 kb on - strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 569,551 + MPMX19_05838 0.19 -1.4 569,551 + MPMX19_05838 0.19 +0.6 569,552 - MPMX19_05838 0.19 -1.7 569,552 - MPMX19_05838 0.19 +0.8 569,552 - MPMX19_05838 0.19 +0.5 569,552 - MPMX19_05838 0.19 -1.2 569,782 + MPMX19_05838 0.42 -0.7 569,782 + MPMX19_05838 0.42 +1.1 569,782 + MPMX19_05838 0.42 -1.0 569,782 + MPMX19_05838 0.42 +1.1 569,782 + MPMX19_05838 0.42 -0.6 569,782 + MPMX19_05838 0.42 -1.2 569,782 + MPMX19_05838 0.42 +0.5 569,782 + MPMX19_05838 0.42 +0.2 569,782 + MPMX19_05838 0.42 +0.1 569,782 + MPMX19_05838 0.42 +0.1 569,782 + MPMX19_05838 0.42 -0.2 569,782 + MPMX19_05838 0.42 -0.3 569,782 + MPMX19_05838 0.42 -0.7 569,783 - MPMX19_05838 0.42 -2.0 569,783 - MPMX19_05838 0.42 -1.3 569,783 - MPMX19_05838 0.42 -1.7 569,783 - MPMX19_05838 0.42 +0.3 570,113 - MPMX19_05838 0.76 -0.6 570,121 + MPMX19_05838 0.77 -0.1 570,121 + MPMX19_05838 0.77 -0.7 570,122 - MPMX19_05838 0.77 -0.4 570,122 - MPMX19_05838 0.77 +1.1 570,122 - MPMX19_05838 0.77 +0.4 570,122 - MPMX19_05838 0.77 +0.0 570,409 + -1.0 570,410 - -1.5 570,410 - -0.8 570,463 + -2.7 570,463 + -0.6 570,463 + +0.0 570,463 + +0.4 570,463 + -0.6 570,463 + +0.0 570,463 + -1.1 570,463 + -0.7 570,464 - -2.0 570,464 - -1.0 570,464 - +0.1 570,464 - -1.1 570,464 - +0.9 570,464 - -0.2 570,464 - -1.6 570,464 - +0.0 570,464 - +0.1 570,464 - +0.4 570,464 - -0.5 570,613 + MPMX19_05839 0.31 +1.0 570,613 + MPMX19_05839 0.31 -0.1 570,613 + MPMX19_05839 0.31 -0.6 570,613 + MPMX19_05839 0.31 -1.4 570,613 + MPMX19_05839 0.31 +0.5 570,613 + MPMX19_05839 0.31 +0.2 570,613 + MPMX19_05839 0.31 -0.9 570,613 + MPMX19_05839 0.31 +1.0 570,613 + MPMX19_05839 0.31 -0.4 570,613 + MPMX19_05839 0.31 +1.1 570,613 + MPMX19_05839 0.31 -0.5 570,614 - MPMX19_05839 0.31 -2.7 570,614 - MPMX19_05839 0.31 +0.6 570,614 - MPMX19_05839 0.31 +0.6 570,614 - MPMX19_05839 0.31 -0.2 570,614 - MPMX19_05839 0.31 -0.4 570,614 - MPMX19_05839 0.31 -0.3 570,773 - MPMX19_05839 0.56 -0.5 570,856 + MPMX19_05839 0.68 +0.9 570,856 + MPMX19_05839 0.68 +0.3 570,856 + MPMX19_05839 0.68 +0.2 570,856 + MPMX19_05839 0.68 -1.3 570,856 + MPMX19_05839 0.68 -0.7 570,857 - MPMX19_05839 0.69 -2.0 570,857 - MPMX19_05839 0.69 -1.0 570,857 - MPMX19_05839 0.69 +0.3 570,857 - MPMX19_05839 0.69 +0.3 570,857 - MPMX19_05839 0.69 -0.4 570,857 - MPMX19_05839 0.69 -0.7 570,976 + MPMX19_05839 0.87 +0.0 570,977 - MPMX19_05839 0.87 -1.2 571,097 + -1.0 571,097 + -1.1 571,097 + -1.0 571,097 + +0.1 571,097 + +0.3 571,097 + -0.4 571,097 + -0.4 571,097 + +0.5 571,097 + +1.2 571,097 + -1.4 571,098 - +0.1 571,098 - -0.5 571,098 - +0.3 571,098 - +0.4 571,098 - -0.2 571,098 - +0.6 571,098 - -1.4 571,098 - -0.5 571,098 - -2.1 571,098 - +0.6 571,098 - +0.0 571,098 - +0.7 571,136 - -0.1 571,208 + +0.3 571,208 + -0.3 571,209 - -0.1 571,209 - -0.2 571,215 + -0.2 571,215 + -0.9 571,215 + -1.2 571,215 + +1.8 571,215 + -0.0 571,215 + +0.8 571,215 + -0.6 571,215 + +0.6 571,215 + +1.9 571,215 + +0.9 571,215 + +0.8 571,215 + +0.7 571,215 + -0.3 571,215 + -0.4 571,215 + +0.3 571,215 + -0.5 571,215 + +0.1 571,215 + -0.7 571,216 - -1.2 571,216 - +1.2 571,216 - -1.4 571,216 - +0.3 571,216 - -0.2 571,216 - -1.2 571,216 - -0.7 571,216 - -0.3 571,216 - -1.1 571,216 - -0.4 571,216 - -1.4 571,216 - +0.3 571,227 + +0.2 571,227 + +0.2 571,227 + +0.1 571,227 + +0.2 571,227 + +0.2 571,227 + +2.6 571,227 + -0.5 571,227 + +0.7 571,227 + -0.5 571,227 + -1.2 571,227 + -1.2 571,227 + +0.5 571,227 + +0.6 571,228 - +0.9 571,228 - -1.0 571,228 - -1.7 571,228 - +0.4 571,431 + MPMX19_05840 0.14 -0.6 571,431 + MPMX19_05840 0.14 +0.4 571,431 + MPMX19_05840 0.14 +0.0 571,431 + MPMX19_05840 0.14 -0.4 571,431 + MPMX19_05840 0.14 +0.2 571,431 + MPMX19_05840 0.14 -0.4 571,431 + MPMX19_05840 0.14 -0.1 571,431 + MPMX19_05840 0.14 +0.0 571,431 + MPMX19_05840 0.14 -0.4 571,431 + MPMX19_05840 0.14 +0.0 571,431 + MPMX19_05840 0.14 -0.3 571,432 - MPMX19_05840 0.14 -0.6 571,432 - MPMX19_05840 0.14 +0.3 571,432 - MPMX19_05840 0.14 -0.5 571,432 - MPMX19_05840 0.14 +1.6 571,432 - MPMX19_05840 0.14 -0.2 571,432 - MPMX19_05840 0.14 -0.1 571,432 - MPMX19_05840 0.14 -0.3 571,811 + MPMX19_05840 0.40 +0.6 571,811 + MPMX19_05840 0.40 -0.9 571,811 + MPMX19_05840 0.40 +0.4 571,811 + MPMX19_05840 0.40 -0.2 571,812 - MPMX19_05840 0.40 -0.5 571,812 - MPMX19_05840 0.40 -0.4 571,812 - MPMX19_05840 0.40 -0.3 571,812 - MPMX19_05840 0.40 +0.4 571,812 - MPMX19_05840 0.40 +0.4
Or see this region's nucleotide sequence