Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05812 and MPMX19_05813 are separated by 36 nucleotides MPMX19_05813 and MPMX19_05814 are separated by 118 nucleotides
MPMX19_05812: MPMX19_05812 - Hydroxypyruvate isomerase, at 539,973 to 540,767
_05812
MPMX19_05813: MPMX19_05813 - 2-hydroxy-3-oxopropionate reductase, at 540,804 to 541,688
_05813
MPMX19_05814: MPMX19_05814 - Putative hydroxypyruvate reductase, at 541,807 to 543,096
_05814
Position (kb) 540
541
542 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.073 kb on - strand, within MPMX19_05812 at 540.073 kb on - strand, within MPMX19_05812 at 540.073 kb on - strand, within MPMX19_05812 at 540.085 kb on - strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.355 kb on - strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.633 kb on + strand, within MPMX19_05812 at 540.633 kb on + strand, within MPMX19_05812 at 540.633 kb on + strand, within MPMX19_05812 at 540.634 kb on - strand, within MPMX19_05812 at 540.634 kb on - strand, within MPMX19_05812 at 540.669 kb on + strand, within MPMX19_05812 at 540.670 kb on - strand, within MPMX19_05812 at 540.670 kb on - strand, within MPMX19_05812 at 540.693 kb on + strand at 540.693 kb on + strand at 540.693 kb on + strand at 540.694 kb on - strand at 540.694 kb on - strand at 540.694 kb on - strand at 540.694 kb on - strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.742 kb on - strand at 540.742 kb on - strand at 540.797 kb on + strand at 540.797 kb on + strand at 540.798 kb on - strand at 540.798 kb on - strand at 540.803 kb on + strand at 540.803 kb on + strand at 540.803 kb on + strand at 540.803 kb on + strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 541.110 kb on + strand, within MPMX19_05813 at 541.110 kb on + strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.144 kb on - strand, within MPMX19_05813 at 541.686 kb on + strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 542.035 kb on + strand, within MPMX19_05814 at 542.035 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 540,006 + -0.6 540,006 + -0.7 540,006 + +0.5 540,006 + +2.6 540,006 + +1.3 540,006 + -0.4 540,006 + -1.2 540,006 + -0.1 540,007 - +0.8 540,007 - +1.1 540,007 - -0.7 540,007 - +1.0 540,007 - -0.7 540,007 - -1.6 540,007 - +0.6 540,007 - +0.6 540,007 - -1.6 540,007 - -2.9 540,007 - +0.2 540,072 + MPMX19_05812 0.12 -0.4 540,072 + MPMX19_05812 0.12 -0.9 540,072 + MPMX19_05812 0.12 -0.3 540,072 + MPMX19_05812 0.12 -1.2 540,072 + MPMX19_05812 0.12 +0.8 540,073 - MPMX19_05812 0.13 +0.7 540,073 - MPMX19_05812 0.13 -0.1 540,073 - MPMX19_05812 0.13 -0.3 540,085 - MPMX19_05812 0.14 -1.4 540,249 + MPMX19_05812 0.35 -1.4 540,249 + MPMX19_05812 0.35 -0.1 540,249 + MPMX19_05812 0.35 +0.2 540,249 + MPMX19_05812 0.35 -0.3 540,249 + MPMX19_05812 0.35 +1.0 540,249 + MPMX19_05812 0.35 +0.0 540,249 + MPMX19_05812 0.35 -2.0 540,249 + MPMX19_05812 0.35 -0.6 540,250 - MPMX19_05812 0.35 -0.9 540,250 - MPMX19_05812 0.35 +1.0 540,250 - MPMX19_05812 0.35 +1.6 540,250 - MPMX19_05812 0.35 -0.3 540,250 - MPMX19_05812 0.35 +0.3 540,250 - MPMX19_05812 0.35 +0.2 540,354 + MPMX19_05812 0.48 -0.4 540,354 + MPMX19_05812 0.48 -1.9 540,354 + MPMX19_05812 0.48 +0.5 540,354 + MPMX19_05812 0.48 +1.5 540,354 + MPMX19_05812 0.48 +0.6 540,355 - MPMX19_05812 0.48 +0.3 540,432 + MPMX19_05812 0.58 +1.8 540,432 + MPMX19_05812 0.58 -1.0 540,432 + MPMX19_05812 0.58 -0.7 540,432 + MPMX19_05812 0.58 -0.8 540,432 + MPMX19_05812 0.58 +0.0 540,432 + MPMX19_05812 0.58 -0.1 540,433 - MPMX19_05812 0.58 -0.4 540,433 - MPMX19_05812 0.58 -0.7 540,433 - MPMX19_05812 0.58 +0.4 540,433 - MPMX19_05812 0.58 +0.6 540,433 - MPMX19_05812 0.58 +0.7 540,501 + MPMX19_05812 0.66 +0.2 540,501 + MPMX19_05812 0.66 +0.0 540,501 + MPMX19_05812 0.66 -1.1 540,501 + MPMX19_05812 0.66 -1.0 540,501 + MPMX19_05812 0.66 -2.8 540,502 - MPMX19_05812 0.67 -0.4 540,502 - MPMX19_05812 0.67 -0.3 540,502 - MPMX19_05812 0.67 -1.2 540,502 - MPMX19_05812 0.67 -0.5 540,510 + MPMX19_05812 0.68 -0.7 540,510 + MPMX19_05812 0.68 -0.3 540,510 + MPMX19_05812 0.68 -0.1 540,510 + MPMX19_05812 0.68 -0.9 540,510 + MPMX19_05812 0.68 +1.0 540,510 + MPMX19_05812 0.68 -0.4 540,510 + MPMX19_05812 0.68 +1.3 540,510 + MPMX19_05812 0.68 -0.2 540,510 + MPMX19_05812 0.68 -0.3 540,510 + MPMX19_05812 0.68 +0.7 540,510 + MPMX19_05812 0.68 +0.2 540,510 + MPMX19_05812 0.68 +0.3 540,510 + MPMX19_05812 0.68 +0.1 540,510 + MPMX19_05812 0.68 -0.8 540,510 + MPMX19_05812 0.68 +0.5 540,510 + MPMX19_05812 0.68 -1.3 540,510 + MPMX19_05812 0.68 +0.5 540,511 - MPMX19_05812 0.68 +1.9 540,511 - MPMX19_05812 0.68 -0.7 540,511 - MPMX19_05812 0.68 -0.1 540,511 - MPMX19_05812 0.68 +0.2 540,511 - MPMX19_05812 0.68 +0.0 540,511 - MPMX19_05812 0.68 -0.1 540,511 - MPMX19_05812 0.68 -0.4 540,511 - MPMX19_05812 0.68 -0.5 540,511 - MPMX19_05812 0.68 +0.3 540,511 - MPMX19_05812 0.68 -0.7 540,511 - MPMX19_05812 0.68 -0.9 540,511 - MPMX19_05812 0.68 +0.3 540,511 - MPMX19_05812 0.68 -0.1 540,511 - MPMX19_05812 0.68 -0.3 540,633 + MPMX19_05812 0.83 +0.4 540,633 + MPMX19_05812 0.83 +0.7 540,633 + MPMX19_05812 0.83 +1.2 540,634 - MPMX19_05812 0.83 +0.1 540,634 - MPMX19_05812 0.83 +0.5 540,669 + MPMX19_05812 0.88 -0.2 540,670 - MPMX19_05812 0.88 -1.9 540,670 - MPMX19_05812 0.88 -0.3 540,693 + -1.5 540,693 + -0.9 540,693 + +0.0 540,694 - +0.2 540,694 - -2.0 540,694 - -0.8 540,694 - +0.2 540,741 + -0.4 540,741 + +0.4 540,741 + -0.2 540,741 + -0.7 540,741 + -1.7 540,741 + +0.0 540,742 - -1.4 540,742 - +0.6 540,797 + -0.1 540,797 + +0.9 540,798 - -0.1 540,798 - -1.8 540,803 + -1.1 540,803 + -0.7 540,803 + -1.7 540,803 + +1.1 540,804 - -1.7 540,804 - -0.8 540,804 - -0.1 540,804 - +1.2 540,804 - +0.9 540,882 + -1.6 540,882 + -1.0 540,882 + +0.0 540,882 + +0.6 540,882 + -1.0 540,882 + +0.2 540,882 + +0.6 540,882 + +0.3 540,882 + -0.5 540,883 - +0.1 540,883 - +1.0 540,883 - -1.4 540,883 - -0.1 540,883 - -0.3 540,883 - -0.2 540,883 - -0.7 540,883 - -0.8 540,883 - +0.3 540,883 - -1.1 540,883 - -0.3 540,883 - +0.5 540,883 - -0.0 540,883 - -1.6 540,883 - +0.3 540,883 - -0.2 540,883 - +1.3 540,883 - -3.2 540,883 - -0.5 540,883 - -1.7 540,883 - +0.0 541,110 + MPMX19_05813 0.35 +0.5 541,110 + MPMX19_05813 0.35 +1.9 541,111 - MPMX19_05813 0.35 +1.3 541,111 - MPMX19_05813 0.35 -0.4 541,111 - MPMX19_05813 0.35 +0.5 541,111 - MPMX19_05813 0.35 +0.0 541,143 + MPMX19_05813 0.38 +0.1 541,143 + MPMX19_05813 0.38 -1.7 541,143 + MPMX19_05813 0.38 -0.3 541,144 - MPMX19_05813 0.38 -0.3 541,686 + +0.1 541,686 + +0.0 541,686 + -0.0 541,686 + -2.5 541,687 - -0.5 541,687 - +0.3 541,687 - -1.9 541,687 - -1.4 541,687 - +0.3 541,773 + +1.1 541,773 + -1.2 541,773 + -1.4 541,773 + -1.5 541,773 + +0.1 541,773 + +0.2 541,773 + +0.1 541,773 + -0.1 541,773 + +0.1 541,773 + -1.0 541,773 + +0.9 541,773 + +0.0 541,774 - -1.3 541,774 - +0.7 541,774 - +0.5 541,774 - -1.1 541,774 - -1.9 541,774 - +0.1 541,774 - +0.6 541,774 - +0.8 542,035 + MPMX19_05814 0.18 -0.3 542,035 + MPMX19_05814 0.18 +0.5 542,473 + MPMX19_05814 0.52 -0.2 542,473 + MPMX19_05814 0.52 -0.7 542,473 + MPMX19_05814 0.52 -1.1 542,473 + MPMX19_05814 0.52 -0.4 542,474 - MPMX19_05814 0.52 +1.2 542,474 - MPMX19_05814 0.52 +0.3 542,474 - MPMX19_05814 0.52 +0.8 542,474 - MPMX19_05814 0.52 -0.5 542,474 - MPMX19_05814 0.52 +0.9 542,474 - MPMX19_05814 0.52 -1.7 542,474 - MPMX19_05814 0.52 +0.0 542,635 + MPMX19_05814 0.64 +0.6 542,635 + MPMX19_05814 0.64 +2.3 542,635 + MPMX19_05814 0.64 -0.5 542,635 + MPMX19_05814 0.64 -0.7 542,635 + MPMX19_05814 0.64 -0.2 542,635 + MPMX19_05814 0.64 -1.4 542,635 + MPMX19_05814 0.64 -0.7 542,635 + MPMX19_05814 0.64 -0.6 542,635 + MPMX19_05814 0.64 -1.0 542,635 + MPMX19_05814 0.64 +0.7 542,636 - MPMX19_05814 0.64 +0.2 542,636 - MPMX19_05814 0.64 -0.7 542,636 - MPMX19_05814 0.64 -0.3 542,636 - MPMX19_05814 0.64 +0.6 542,636 - MPMX19_05814 0.64 -0.1 542,636 - MPMX19_05814 0.64 +0.6 542,636 - MPMX19_05814 0.64 -1.1 542,636 - MPMX19_05814 0.64 -0.2 542,636 - MPMX19_05814 0.64 +0.6 542,636 - MPMX19_05814 0.64 -0.9
Or see this region's nucleotide sequence