Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05795 and MPMX19_05796 are separated by 34 nucleotides MPMX19_05796 and MPMX19_05797 are separated by 73 nucleotides MPMX19_05797 and MPMX19_05798 are separated by 250 nucleotides
MPMX19_05795: MPMX19_05795 - 2-dehydro-3-deoxygluconokinase, at 518,343 to 519,263
_05795
MPMX19_05796: MPMX19_05796 - HTH-type transcriptional repressor BdcR, at 519,298 to 519,900
_05796
MPMX19_05797: MPMX19_05797 - Cyclic-di-GMP-binding biofilm dispersal mediator protein, at 519,974 to 520,687
_05797
MPMX19_05798: MPMX19_05798 - HTH-type transcriptional repressor NanR, at 520,938 to 521,789
_05798
Position (kb) 519
520
521 Strain fitness (log2 ratio) -2
-1
0
1 at 519.141 kb on + strand, within MPMX19_05795 at 519.141 kb on + strand, within MPMX19_05795 at 519.141 kb on + strand, within MPMX19_05795 at 519.141 kb on + strand, within MPMX19_05795 at 519.142 kb on - strand, within MPMX19_05795 at 519.357 kb on + strand at 519.358 kb on - strand at 519.591 kb on - strand, within MPMX19_05796 at 519.690 kb on - strand, within MPMX19_05796 at 519.690 kb on - strand, within MPMX19_05796 at 519.690 kb on - strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.741 kb on - strand, within MPMX19_05796 at 519.801 kb on - strand, within MPMX19_05796 at 519.801 kb on - strand, within MPMX19_05796 at 519.801 kb on - strand, within MPMX19_05796 at 519.931 kb on + strand at 519.932 kb on - strand at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.304 kb on + strand, within MPMX19_05797 at 520.410 kb on - strand, within MPMX19_05797 at 520.410 kb on - strand, within MPMX19_05797 at 520.616 kb on + strand at 520.616 kb on + strand at 520.616 kb on + strand at 520.616 kb on + strand at 520.616 kb on + strand at 520.616 kb on + strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.716 kb on + strand at 520.716 kb on + strand at 520.716 kb on + strand at 520.717 kb on - strand at 520.717 kb on - strand at 520.717 kb on - strand at 520.717 kb on - strand at 520.717 kb on - strand at 520.893 kb on + strand at 521.185 kb on - strand, within MPMX19_05798 at 521.185 kb on - strand, within MPMX19_05798 at 521.185 kb on - strand, within MPMX19_05798 at 521.185 kb on - strand, within MPMX19_05798 at 521.185 kb on - strand, within MPMX19_05798
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 519,141 + MPMX19_05795 0.87 -0.1 519,141 + MPMX19_05795 0.87 +1.6 519,141 + MPMX19_05795 0.87 -1.1 519,141 + MPMX19_05795 0.87 +1.0 519,142 - MPMX19_05795 0.87 -0.4 519,357 + +0.4 519,358 - -0.7 519,591 - MPMX19_05796 0.49 -0.1 519,690 - MPMX19_05796 0.65 -1.7 519,690 - MPMX19_05796 0.65 +0.6 519,690 - MPMX19_05796 0.65 +0.2 519,740 + MPMX19_05796 0.73 -0.9 519,740 + MPMX19_05796 0.73 +0.1 519,740 + MPMX19_05796 0.73 -0.3 519,740 + MPMX19_05796 0.73 -0.9 519,740 + MPMX19_05796 0.73 -1.0 519,740 + MPMX19_05796 0.73 -1.5 519,740 + MPMX19_05796 0.73 -0.9 519,741 - MPMX19_05796 0.73 -2.0 519,801 - MPMX19_05796 0.83 -1.9 519,801 - MPMX19_05796 0.83 -0.2 519,801 - MPMX19_05796 0.83 -0.4 519,931 + -1.0 519,932 - +0.2 520,082 + MPMX19_05797 0.15 -0.7 520,082 + MPMX19_05797 0.15 -0.7 520,082 + MPMX19_05797 0.15 -2.1 520,082 + MPMX19_05797 0.15 -0.6 520,082 + MPMX19_05797 0.15 -0.4 520,082 + MPMX19_05797 0.15 -0.6 520,082 + MPMX19_05797 0.15 +0.3 520,082 + MPMX19_05797 0.15 +0.1 520,082 + MPMX19_05797 0.15 -0.9 520,082 + MPMX19_05797 0.15 -1.0 520,083 - MPMX19_05797 0.15 -0.9 520,083 - MPMX19_05797 0.15 +0.6 520,083 - MPMX19_05797 0.15 -1.7 520,083 - MPMX19_05797 0.15 +0.1 520,083 - MPMX19_05797 0.15 -0.4 520,083 - MPMX19_05797 0.15 +0.3 520,083 - MPMX19_05797 0.15 -1.2 520,083 - MPMX19_05797 0.15 -0.4 520,083 - MPMX19_05797 0.15 -0.6 520,083 - MPMX19_05797 0.15 -1.0 520,083 - MPMX19_05797 0.15 -0.5 520,083 - MPMX19_05797 0.15 -0.7 520,083 - MPMX19_05797 0.15 -0.5 520,304 + MPMX19_05797 0.46 -1.5 520,410 - MPMX19_05797 0.61 +0.7 520,410 - MPMX19_05797 0.61 -0.9 520,616 + -0.4 520,616 + -0.2 520,616 + -0.4 520,616 + +0.2 520,616 + +0.2 520,616 + -0.5 520,617 - -1.1 520,617 - +0.1 520,617 - -1.4 520,617 - -0.3 520,617 - -0.6 520,617 - -2.2 520,617 - +0.3 520,617 - +1.0 520,617 - +0.2 520,617 - -0.3 520,617 - -0.4 520,716 + +1.0 520,716 + -0.7 520,716 + +1.5 520,717 - -1.4 520,717 - -0.1 520,717 - +1.2 520,717 - -1.6 520,717 - -0.4 520,893 + -0.5 521,185 - MPMX19_05798 0.29 -1.2 521,185 - MPMX19_05798 0.29 +0.6 521,185 - MPMX19_05798 0.29 -2.1 521,185 - MPMX19_05798 0.29 -1.7 521,185 - MPMX19_05798 0.29 -2.0
Or see this region's nucleotide sequence